mRNA_L-elsbetiae_contig669.15422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig669.15422.1
Unique NamemRNA_L-elsbetiae_contig669.15422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: D8LGN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN3_ECTSI)

HSP 1 Score: 677 bits (1748), Expect = 4.530e-237
Identity = 452/594 (76.09%), Postives = 468/594 (78.79%), Query Frame = 1
Query:    1 MGYVEQQPAAPFVQDANGI-----GGVMPVVGAIPXXXXXXXXXXXXXXXXTGTTRVYVGNLSWETEWQDLKDHMRSAGEVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGP-PMMGQPMGGHMQQXXXXXXXXXQGGG-----APMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSKTGGA----SNKAXXXXXXXXXXXXXXXXXPVATTEAXVAAPAVPAA-APISTTS 1734
            MGYVEQ   A + QDANG+     GGVMPVVG +                 TG TRVYVGNLSWETEWQDLKDHMR+AGEVVRADVM+DASGRSKGCGIVEYRTPAEA EAINTLLDTELKGRLIFVREDREAAXXXXXXXXXX XX                     PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGG+VIRADVM+DQ GRSRGCGIVE+A+P+QA QAIEQLNNSELK RMIFVREDRE+G         XXXXXXXXXXXXXXXXXMVGQMQMGPMG F GQ FA GP  +MGQ MGGHMQQ     XXXX           MPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNT LGGRPIFVREDREQQ+PRQXXXXXXXXXXXXXXXXXXXXXXX      + AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMDGSRRSKGWGTVRF T EEAQ+AIQELNGTELGSRQIEVREDSKTGG     S             XXXX   PV  TEA  AAPA  A  APISTTS
Sbjct:    5 MGYVEQP--AQYAQDANGVVVNGMGGVMPVVGGM--------SAPPVGVMTTGITRVYVGNLSWETEWQDLKDHMRTAGEVVRADVMRDASGRSKGCGIVEYRTPAEAQEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXMXXG--------------------PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRMIFVREDRESGT------PGXXXXXXXXXXXXXXXXXMVGQMQMGPMGAFGGQPFAAGPGALMGQSMGGHMQQMQMHQXXXXXXXXXXXXXGAMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXE-----NLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQIEVREDSKTGGXXXXXSYPKAGNAKAGATAXXXXSADPVGATEA--AAPAASATVAPISTTS 555          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A6H5J8N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N0_9PHAE)

HSP 1 Score: 513 bits (1322), Expect = 9.620e-175
Identity = 318/372 (85.48%), Postives = 330/372 (88.71%), Query Frame = 1
Query:  490 PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGP-PMMGQPMGGHMQQXXXXXXXXXQGGGAP--MPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSKTGG 1596
            PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGG+VIRADVM+DQ GRSRGCGIVE+A+P+QA QAIEQLNNSELK RMIFVREDRE+G          XXXXXXXXXXXXXXXXMVGQMQMGPMG F GQ FA GP  +MGQ MGGHMQQ     XXXX        MPQATGNRIYVGNLAWTVEWQELKDHMRTVGKV+HADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNT LGGRPIFVREDREQQ+PRQXXXXXXXXXXXXXXXXXXXXXXXX     + AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMDGSRRSKGWGTVRF T EEAQ+AIQELNGTELGSRQIEVREDSKTGG
Sbjct:    5 PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRMIFVREDRESGT----PGSGHXXXXXXXXXXXXXXXXMVGQMQMGPMGAFGGQPFAAGPGALMGQSMGGHMQQMQMHQXXXXXXXXXXXAMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVLHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXXE----NLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQIEVREDSKTGG 368          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S4IUY5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY5_9STRA)

HSP 1 Score: 338 bits (866), Expect = 6.960e-105
Identity = 255/482 (52.90%), Postives = 295/482 (61.20%), Query Frame = 1
Query:  145 TTRVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            T RVYVGNLSWET W++LKDHM++ G EV RADV+    GRSKGCGI+E+ T   A  A+ TL DTEL GR IFVREDRE    XXXXXXXXXXXXXXXXXXXXXXXXX         G   Q  RVYVGNL+WDVA QDLKDHMR  G +V+ A+VM +  GRS+GCGIVEFA   +A +AI  L ++ELKGRMIFVREDRE    XXXXXXXX                          GGF G+                                          +YVGNLA+   WQ+LKDHMR  G V  A++LQ  DGRSKGCGIV Y+  + A+RAIREL NT L GRPIFVREDREQ     XXXXXXXXXXXXX                  AG QL+VGNLS++T+W +LKDHFR  G+VERA+VM     +S+G+GTVRF    +A  AIQ LNG EL  R +EV+ D K
Sbjct:  111 TRRVYVGNLSWETTWRELKDHMKTTGCEVTRADVLCSPDGRSKGCGIIEFETAEGAQRAVLTLNDTELMGRQIFVREDREEGSGXXXXXXXXXXXXXXXXXXXXXXXXXRYAS-----GGDAQTRRVYVGNLSWDVALQDLKDHMRNAG-EVVFAEVMKEHDGRSKGCGIVEFATAAEAEEAISTLTDTELKGRMIFVREDRETTXXXXXXXXXXAV-----------------------FGGFQGR-----------------------------------XXXXXTSVYVGNLAYETSWQDLKDHMRKAGNVDQANILQGEDGRSKGCGIVRYQRPQEASRAIRELQNTMLTGRPIFVREDREQGSHHXXXXXXXXXXXXXXHSRVA-------------AGCQLWVGNLSWDTSWRELKDHFRQCGDVERAEVMEGPDGQSRGFGTVRFYRQRDAANAIQRLNGVELQGRVLEVKIDGK 515          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S2KX18_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KX18_9STRA)

HSP 1 Score: 328 bits (841), Expect = 2.560e-101
Identity = 245/500 (49.00%), Postives = 286/500 (57.20%), Query Frame = 1
Query:  145 TTRVYVGNLSWETEWQDLKDHMRSAGEVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNR------IYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXX------GDFA-------GRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            T R+YVGNLSW   W++LKDHM+SAG+V RAD+++   GRSKGCGIVE+ T  EA  A+ TL D+EL GR IFVREDREA                                    + +   + RVYVGNLA++VAWQDLKDHMR  G +V  A+VM    GRS+GCGIVEFAD + A  AI+ LN++EL GR IFVREDRE                               Q   G  GG  GQ               H   XXXXXX    G GA       N       +YVGNLA+   WQELKDHMR VG +  AD+LQ  DGRSKGCGIV Y+  + A RAIREL N+ L GRPIFVREDRE      XXXXXXXXXXXXXXXXXXXXXXXXXXXX      G+         G QLYVGNLS+ T W DLKDHF   G V+RA+V      R KG+G +RF T  +A  AI+ LNG E   R++EVR D+K
Sbjct:   89 TKRLYVGNLSWSVSWRELKDHMKSAGDVTRADILQTPDGRSKGCGIVEFATAEEASNAVETLNDSELMGRQIFVREDREAE-----------------------------------KAADASSKRVYVGNLAYEVAWQDLKDHMRDAG-EVQFAEVMMMNDGRSKGCGIVEFADEEGAQNAIDTLNDTELCGRQIFVREDRE-------------------------------QKVSG--GGHHGQ---------------HXXXXXXXXXLNRVGXGAXXXXGRYNNQLGNVNVYVGNLAYETTWQELKDHMRRVGNIDKADILQGNDGRSKGCGIVIYQSPKEAQRAIRELQNSELNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTSGNLMPGAPSEQGCQLYVGNLSWGTGWRDLKDHFGQCGGVDRAEVAEGPDGRKKGFGVIRFHTAGDAAEAIERLNGGEFMGRKLEVRLDNK 504          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S1BM28_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BM28_9STRA)

HSP 1 Score: 323 bits (829), Expect = 7.270e-101
Identity = 231/482 (47.93%), Postives = 273/482 (56.64%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAGE---VVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNL+WE  WQDLKDHMR  GE   V RADVM+   GRSKGCG+VE+ T   A  A+  + DTEL GR IFVREDREAA                                         + RVYVGNL+W+V WQDLKDHMR   GDV  A+VM+   GRS+GCGIVE+A  +QA +AI  LN+++L GRMIFVREDRE G  XXXXXXXXXXXXXXXXXXXXXX                                                       +    +YVGNLA+   WQ+LKDHMR  G V  AD+L   DGRSKGC IV Y+  + A RAIREL N+ L GRPIFVREDREQ   R XXXXXXXXXX                   D    QL+VGNLS++TTW +LKDHF+  GEV+R +VM     R KG+GTV F   ++A +AI+ +NG EL  R +EV+ D+K
Sbjct:    3 RVYVGNLAWEATWQDLKDHMRGLGEGCEVTRADVMQTHDGRSKGCGLVEFATAEGARRAVLMMNDTELHGRQIFVREDREAAAALPAPGATGGRAVDAAEAG---------------------SRRVYVGNLSWEVVWQDLKDHMR-QAGDVQFAEVMTGGDGRSKGCGIVEYATAEQAQEAISTLNDTDLNGRMIFVREDREVGGXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------SNACSVYVGNLAFETPWQDLKDHMRAAGNVDKADILTGEDGRSKGCAIVIYQKPQEAARAIRELQNSVLQGRPIFVREDREQGGGRXXXXXXXXXXXRSAGYDGDYDRMPVD----DGTATQLFVGNLSYDTTWEELKDHFKQCGEVDRVEVMEGPDGRKKGYGTVSFFKAKDASSAIRRMNGVELAGRPLEVKVDAK 403          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S3Q3W4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3W4_9STRA)

HSP 1 Score: 325 bits (833), Expect = 1.610e-100
Identity = 211/480 (43.96%), Postives = 263/480 (54.79%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNL+WE  W++LKDHM+ AG EV RADV+    GRSKGCGIVE+ + AE  +    L DT+L GR IFVREDRE+                                         Q+ RVYVGNL+W+VAWQDLKD+MR  G +V+ ++VM++  GRS+GCGIVE+A P++A  A   L+++ELK RMIFVREDRE  +G                          G  Q G  G  +                                            +YVGNLA+   WQ+LKDHMR  G V  A+VLQ  DG SKGCGIV Y++ R ++RAIREL  + L GRPIFVREDREQ     XXXXXXXXXXX XX X                G QL+VGNLSF+T W +LKDHFR  G+VER +V+     R KG+GTVRF   ++A  AI+ LNG EL  R+++VR D+K
Sbjct:   84 RVYVGNLAWEVTWKELKDHMKEAGCEVTRADVLASPDGRSKGCGIVEFAS-AEGAQRALLLNDTDLAGRQIFVREDRESGNGGGYYTQQPGNPASATSGGNDASEE-------------KQSCRVYVGNLSWEVAWQDLKDYMRSAG-EVVYSEVMTNADGRSKGCGIVEYATPEEAKNACTTLSDTELKDRMIFVREDRETSSGG-------------------------GNQQGGNRGSTS--------------------------------------------VYVGNLAYETSWQDLKDHMRAAGNVDQANVLQQEDGTSKGCGIVVYQNARDSSRAIRELQESVLHGRPIFVREDREQGGXXXXXXXXXXXXXXFXXRXRGGHQRKPVTP-----GTQLFVGNLSFDTNWTELKDHFRQCGDVERVEVIEGHDGRKKGFGTVRFYNAKDAANAIERLNGVELQGRELQVRVDNK 474          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S2W0R0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0R0_9STRA)

HSP 1 Score: 324 bits (831), Expect = 8.200e-100
Identity = 228/484 (47.11%), Postives = 277/484 (57.23%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPR----QXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNLSW+  W+DLKD M+S G EV RADV+    GRSKGCGIVE+ T   A +A+ TL DTELKGR IFVREDRE+                                     G  +Q  RVYVGNL+WDVAWQDLKDHMR   G+V  A+VM++  GRS+GCGIVEFA  ++A  AIE L +SELKGRMIFVREDRE+ +                           G  Q G   G                                              ++VGNL++   WQ+LKDHMR  G V  A+VL   DGRSKGCGIV+Y+  + A+RA+REL N+ L GRPIF REDREQ        + XXXXXXXXXXXXXXXXXXXXXXXXXX     G QL+VGNLS +TTW DLKDHFR  G+VERA+V+ +G R +  +GT+RF   ++A  AI  L+G E    ++EVR D++
Sbjct:   98 RVYVGNLSWDVSWRDLKDWMQSTGCEVSRADVLASPDGRSKGCGIVEFATAEMAEKAVETLNDTELKGRAIFVREDRES------NSSSGYYTQQTEGESAPSPSASPAEADSCASGGESQGRRVYVGNLSWDVAWQDLKDHMR-QAGEVSFAEVMNESDGRSKGCGIVEFATAEEAKDAIETLTDSELKGRMIFVREDRESTSSGGG-----------------------GNFQSGSKEG-------------------------------------------STSVFVGNLSYETSWQDLKDHMRQAGNVDEANVLSMDDGRSKGCGIVQYQRAQDADRAVRELQNSILQGRPIFCREDREQPGAAPSRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXSNSGGGSQLFVGNLSADTTWKDLKDHFRQCGDVERAEVV-EGKRST--FGTIRFFKEKDALDAISNLDGVEFQGHELEVRNDNR 505          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A7S4AB42_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AB42_9STRA)

HSP 1 Score: 320 bits (820), Expect = 2.680e-98
Identity = 226/490 (46.12%), Postives = 274/490 (55.92%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDRE----AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGSGN---QNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMP-QATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSK-GCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDR-EQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNL+WE  WQDLKD M++   EVVR DVM+ + GRSKGC IVE+ T   A EA+ TL DTEL GR IFVREDRE     A                                     S N   Q+ RVYVGNL+WDV W DLKDHM+ +G DV+RADV+ +  GRS+GCGIVEF   + A +AIE L ++EL+GRMIFVREDRE G+G                                                  +  GGH  +          G G+  P Q + N +YV NL++ V WQ+LKDHMR  G V  A +L   DG +  GCGIV Y+  R A RAIREL  + L GRP+ +RED+      R   XXXXXXXXXXXXXXXXXXXXX           QLYVGNLS++TTW +LK+HF  +GEV RADV    + RSKG+G V+F+ PE+AQTAI  L+G EL  R +EVR D K
Sbjct:   67 RVYVGNLAWEISWQDLKDLMKTLNHEVVRVDVMQTSDGRSKGCAIVEFATSEGAAEAVLTLNDTELSGRRIFVREDREKSNIGAGGRDFSARGGRYSNNNQRNRHHGTNQSGSNYNHNSTVSSNPESQSRRVYVGNLSWDVTWSDLKDHMKTVG-DVVRADVICEHNGRSKGCGIVEFETEEGAQEAIETLTHTELRGRMIFVREDRE-GSGS-------------------------------------------------EGKGGHALRRI--------GAGSANPNQTSNNSVYVWNLSYDVSWQDLKDHMRKAGNVDQATILTGNDGSTSIGCGIVVYQSARDAARAIRELQESDLKGRPVRLREDKIASAGSRSDRXXXXXXXXXXXXXXXXXXXXXGHGDEPASELTQLYVGNLSYDTTWKELKEHFNQAGEVARADVKTSDNGRSKGFGIVKFARPEDAQTAISTLSGVELDGRALEVRPDHK 497          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A448YVD1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVD1_9STRA)

HSP 1 Score: 317 bits (813), Expect = 1.560e-97
Identity = 204/489 (41.72%), Postives = 250/489 (51.12%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------PRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSK-GCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDR-EQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNL+WE  WQDLKD M++   EVVR DV++ + GRSKGCGIVE+ TP  A EA+ TL DTEL GR IFVREDRE A                                             G+Q+ RVYVGNL+WDVAW DLKDHM+   G+V+RADV+ +  GRS+GCGIVEF   + A  AI  L +SEL GR IFVREDRE G+G                                  GG   ++  PG                               Q++   +YV NL++ V WQ+LKDHMR  G V  A +L   DG +  GCGIV Y+  R A RAIREL  + L GRP+ +RED+   + PR                                   QLYVGNLS++TTW +LK+HF  +GEV RADV    S RSKG+G VRF++PE+AQ AI  L GTEL  R IEVR D +
Sbjct:   63 RVYVGNLAWEVSWQDLKDLMKTLDHEVVRVDVLQTSDGRSKGCGIVEFATPEGAAEAVLTLNDTELSGRRIFVREDREQASGRETGHNNYPYSSSRAGGRYGNPRSRYGGPAIHHGNHQGVSSDPGSQSRRVYVGNLSWDVAWADLKDHMK-QAGEVVRADVICEHNGRSKGCGIVEFETEEGARNAIATLTHSELLGRTIFVREDRE-GSGSEAK------------------------------GGQRPKRNGPG----------------------------AFHQSSNKSVYVWNLSYDVSWQDLKDHMRRAGNVDQATILTGSDGSTSIGCGIVVYQSARDAARAIRELQESDLKGRPVRLREDKIAGRGPRPARGPRSGSDEPRAPPGVVT---------------QLYVGNLSYDTTWRELKEHFLQAGEVVRADVKASDSGRSKGFGIVRFASPEDAQNAIATLAGTELDGRPIEVRPDHR 476          
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Match: A0A1E7F6P9_9STRA (RRM_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6P9_9STRA)

HSP 1 Score: 312 bits (800), Expect = 4.300e-95
Identity = 255/498 (51.20%), Postives = 298/498 (59.84%), Query Frame = 1
Query:  151 RVYVGNLSWETEWQDLKDHMRSAG-EVVRADVMKDASGRSKGCGIVEYRTPAEALEAINTLLDTELKGRLIFVREDREAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRG-----SGN---QNARVYVGNLAWDVAWQDLKDHMRGLGGDVIRADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRENGNGXXXXXXXXXXXXXXXXXXXXXXXXMVGQMQMGPMGGFAGQQFAPGPPMMGQPMGGHMQQXXXXXXXXXQGGGAPMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPLGGRPIFVREDREQQHPRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFA----------GRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFSTPEEAQTAIQELNGTELGSRQIEVREDSK 1587
            RVYVGNL+WE  WQDLKD M++   EVVR DVM+ + GRSKGCGIVE+ T   A EAI TL DTEL GR IFVREDRE +                      XXXXXXXXXXXX        S N   Q+ RVYVGNL+WDV+W +LKDHM+   G+V+RADV+S+  GRS+GCGIVE+A  D+A QAI  L ++EL+GR IFVREDRE G  XXXXXXXXXXXXXXXXXXXXXXXX                                                        N +YV NL++ V WQ+LKDHMR  G V  A VL   DG S GCGIV ++  R A RAIREL  + L GRP+ +REDR        XXXXXXXXXXXXXXXXXXXXX       +F+          G QLYVGNLS+ TTW DLK+HF  +GE+ RADV    S RSKG+G VRF+  ++A+ AI  L G EL  R +EVR D K
Sbjct:   70 RVYVGNLAWEVSWQDLKDLMKTTNHEVVRCDVMQTSDGRSKGCGIVEFATNEGAAEAILTLNDTELSGRSIFVREDRETSNSGGTSSNPREHSSRDRNRNRHXXXXXXXXXXXXXXXXXXTVSSNPESQSCRVYVGNLSWDVSWPELKDHMK-TAGEVVRADVISEHNGRSKGCGIVEYATEDEAQQAIATLTHTELQGRTIFVREDRERGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------XXXGSNSVYVWNLSYDVSWQDLKDHMRKAGNVDQATVLTGNDGTSIGCGIVVFQSARDAQRAIRELQESDLNGRPVRLREDRVSGTGGGGXXXXXXXXXXXXXXXXXXXXXRTRGGGRNFSQPDNEDPVPEGTQLYVGNLSYSTTWRDLKNHFSQAGEIVRADVKTSDSGRSKGFGIVRFTRSDDAEAAISSLGGIELDGRSLEVRLDHK 517          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig669.15422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGN3_ECTSI4.530e-23776.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8N0_9PHAE9.620e-17585.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4IUY5_9STRA6.960e-10552.90Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2KX18_9STRA2.560e-10149.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1BM28_9STRA7.270e-10147.93Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3Q3W4_9STRA1.610e-10043.96Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2W0R0_9STRA8.200e-10047.11Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4AB42_9STRA2.680e-9846.12Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448YVD1_9STRA1.560e-9741.72Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F6P9_9STRA4.300e-9551.20RRM_1-domain-containing protein n=1 Tax=Fragilario... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig669contigL-elsbetiae_contig669:13600..19691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score683.3
Seed ortholog evalue9.7e-194
Seed eggNOG ortholog2880.D8LGN3
Preferred nameEIF4H
KEGG koko:K03258
KEGG Pathwayko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-10_002890.1
Exons6
Model size2043
Cds size1737
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.2808354-UTR-L-elsbetiae_contig669:13599..139051622816740.2808354-UTR-L-elsbetiae_contig669:13599..13905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig669 13600..13905 -
1691683778.2451403-UTR-L-elsbetiae_contig669:13599..139051691683778.2451403-UTR-L-elsbetiae_contig669:13599..13905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig669 13600..13905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.293415-CDS-L-elsbetiae_contig669:13905..141361622816740.293415-CDS-L-elsbetiae_contig669:13905..14136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 13906..14136 -
1691683778.2633176-CDS-L-elsbetiae_contig669:13905..141361691683778.2633176-CDS-L-elsbetiae_contig669:13905..14136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 13906..14136 -
1622816740.309286-CDS-L-elsbetiae_contig669:14586..149671622816740.309286-CDS-L-elsbetiae_contig669:14586..14967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 14587..14967 -
1691683778.2720573-CDS-L-elsbetiae_contig669:14586..149671691683778.2720573-CDS-L-elsbetiae_contig669:14586..14967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 14587..14967 -
1622816740.3234823-CDS-L-elsbetiae_contig669:15435..158191622816740.3234823-CDS-L-elsbetiae_contig669:15435..15819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 15436..15819 -
1691683778.282991-CDS-L-elsbetiae_contig669:15435..158191691683778.282991-CDS-L-elsbetiae_contig669:15435..15819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 15436..15819 -
1622816740.3355293-CDS-L-elsbetiae_contig669:16712..170651622816740.3355293-CDS-L-elsbetiae_contig669:16712..17065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 16713..17065 -
1691683778.2935147-CDS-L-elsbetiae_contig669:16712..170651691683778.2935147-CDS-L-elsbetiae_contig669:16712..17065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 16713..17065 -
1622816740.3476243-CDS-L-elsbetiae_contig669:17814..179771622816740.3476243-CDS-L-elsbetiae_contig669:17814..17977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 17815..17977 -
1691683778.304434-CDS-L-elsbetiae_contig669:17814..179771691683778.304434-CDS-L-elsbetiae_contig669:17814..17977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 17815..17977 -
1622816740.3621848-CDS-L-elsbetiae_contig669:19466..196911622816740.3621848-CDS-L-elsbetiae_contig669:19466..19691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 19467..19691 -
1691683778.3150136-CDS-L-elsbetiae_contig669:19466..196911691683778.3150136-CDS-L-elsbetiae_contig669:19466..19691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 19467..19691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig669.15422.1prot_L-elsbetiae_contig669.15422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig669 13906..19691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig669.15422.1

>prot_L-elsbetiae_contig669.15422.1 ID=prot_L-elsbetiae_contig669.15422.1|Name=mRNA_L-elsbetiae_contig669.15422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=579bp
MGYVEQQPAAPFVQDANGIGGVMPVVGAIPPPPAAAAAAAAAAAAATGTT
RVYVGNLSWETEWQDLKDHMRSAGEVVRADVMKDASGRSKGCGIVEYRTP
AEALEAINTLLDTELKGRLIFVREDREAAGGGGAGGGAGGGGAGGAGGGN
QHRGPPPMAGGGGPRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGDVI
RADVMSDQTGRSRGCGIVEFADPDQAGQAIEQLNNSELKGRMIFVREDRE
NGNGGGGGHHGGQHQQMHQQQQQQQQQQMVGQMQMGPMGGFAGQQFAPGP
PMMGQPMGGHMQQMQMHQQQQHQGGGAPMPQATGNRIYVGNLAWTVEWQE
LKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTPL
GGRPIFVREDREQQHPRQRRGGGGGRGGRGEQANGGGGRGGGRGGGGDFA
GRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDGSRRSKGWGTVRFS
TPEEAQTAIQELNGTELGSRQIEVREDSKTGGASNKASNKAAAAAASATT
AAAAPVATTEAAVAAPAVPAAAPISTTS*
back to top

mRNA from alignment at L-elsbetiae_contig669:13600..19691-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig669.15422.1 ID=mRNA_L-elsbetiae_contig669.15422.1|Name=mRNA_L-elsbetiae_contig669.15422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6092bp|location=Sequence derived from alignment at L-elsbetiae_contig669:13600..19691- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATACGTGGAGCAGCAGCCTGCCGCTCCGTTCGTGCAGGATGCCAA CGGCATCGGCGGCGTCATGCCCGTGGTGGGCGCTATTCCACCCCCCCCCG CCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCGACCGGCACCACC CGTGTCTACGTGGGCAACCTCTCGTGGGAGACCGAGTGGCAGGATCTCAA GGACCACATGCGGAGCGCGGGCGAGGTGTGTGTTATCTTAATCTGCGAGA CTCCCTTCCCCGCTCTACAGAACTCTGGTTGTTGTCGCCACACTGGAGCT GGTGCAGGGGTTGTTGTTCGCGCGGGCGTGTGTGGACTTGAAACAAAAAC GCGCCACTCGACCACCACACGCGCTCCGCAAAGTACGCTGTCCGCAGCTT CCTTTATAATCAGCAGAGTTCGAGGTTTCAAGACTCACCGCACCTCTCAG CGAAGAGAGCGAGCGTTTCTCGATGTGGGGGCGGGTAGGTGAACTCGGCC GATCCGATGTACACACAATTCAACTCCCGCCGAGGCGTGTTTTGATTTAA CCCTGTTATTTCCACGTGTGTCTCTCAGAGTGGGTTTCACATGCCCGCGG GATGTTTTCGTCCCAAACAAATGCCGAGAAGCACGCACTTTTTGCTTTTT TGCGCTCAATGTGTGTGGTAAGAACATACAAGTATTAAATGCAGACCTCA CGGCTGTGCCATCCCTCCCCAGATGTGCCGAAAGCTTCACCTCCGTCTTG TCTATTTTTTGCCGTGTTCGACGAGTTTATTCGAGGCCGTCCCATGCATT GTACTGCACACATACATGGCCTGCCCCATGTGGTACACGTACACGGCGGC GTATACAACAATGGAAGAGTTAAAAAGAAATGCCCCTCTAGTAGTGTGCT TGTACGAGGAAGTTCAATGTTGAAATACTGTGGAGATGTGCGCTTCTTCA AGAAGCACGCCCCTTTTGAGGCGCGACCGCCGAATTTGCTCCAGTCCTTT TTTTCGTGCTCAGGAGAAAGTATATACTGAATTACTGCTGTATGTATGTA CAACAGACGCACCGTTTTGTCGACAGAAAGCTGCGGCAGACCAGACACCC TGTAAGAGCAGTTCGAACCTCGATTGTTGTCCCCGAAAGGCGGGGGGAGG GTTTTTGCAAGGCAGGCAGACACCCCTGACCCCTCGATCGCCCTGAATAA GTGTCCATTCCTGCTCAACCAAAGTCCCTCCCTTTGCGATACCACCTCCC CAGCTCTCTCTATCCCTGTGCCCATCCTTCTCTTGGGGACGAGACGACGG AGGAGGGTGACTTCGTTTGAGGACGTGGTGGTTTCATTCGACATGAGCTA GCACACCACGTCCCCCGAGAAAGCTCCGGTAGCGTTGCCATATACACACA CAGCCAACCATCCCTGTTGTAAGAATTACAGCTTAACCCCACCTCCTCGT TCTCCATGTTTTTTATTTTCTGCGTGCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA CCCACCAGCCAAAAAGCCCCCCCCAAACCACANNNNNNNNNNTTGTAAAA ATTACAGCTTACCCCCCCCCCCCCCTTCCCCCTTTTTTTTTTTTTCTGCG TGCCCCCCCCCCCCCCCCCCCCCTCCTTCCCCTACCCTCCCCAACGACCC TGACGAAACAACAGGTAGTGCGAGCCGACGTCATGAAGGACGCCTCCGGC AGATCCAAGGGCTGCGGCATCGTGGAGTACCGGACGCCGGCAGAGGCGCT GGAGGCCATCAACACGCTCCTCGACACGGAGCTCAAGGGGCGCCTGATCT TCGTCCGGGAAGACCGGGAGGCCGCTGGTGTGTGTGTGTGTGTGCGTGTG TGCGTCTCGTTTTCCGTTCCGCGAGGACCCTTTTGTGTTTTACCACGGTT TGGGATCGGATCGATTTTTGTTTCTGTGGTCCGCGGCCGCGCGCCGTTTG GTGATGCCCCCCCCCCCCCAAGTGATCGAGTTCGGCGAGGGAGCGGCGGT TTTGTTTTGGCGGGCCAGGCCGAGGAGCTGTTCATCTTCCTGGAAAGGTT TGTTTTGGCCTCGACTATTCTGGCTGATGCATCCATTTTAGCGCGTCGCG CCTCACGAGTGTAATGCTGCTGCTGCTGCTGCTGTAGCTGCTGCTGCTGT TGCTTGCGGTTTTCCCGGCGGGTAAGATCCCAACGTTTGGGAACAGAAAG GTTGGAGTTTGATGACCGGCCGGGCGGCCAGAGACTATCCGCTGTATCCA TCCATCTGACCCCCCCCCCTCCACCCGCGCGCCATTCCTGCGGTCGGGCT GGTGATATTCAGTCTCCATTCTCGATTGCGTCGAAACGTCTTTCTTGTCC CGCCCATCTGGACGGAGCGAGCGAGGCGAACGACGCGAGAACCCAGCCGA AAACTGCCCCCGAAACATCAATGGTTATGTTGTTCGTCCCCCCACCCCCC CCACACATGGAAGCTTAGGGGAGTGGAGTGTTTTTGATGGGAGGGAGGCG GGCGCCGTTGCCTTAATCCCATTGTGCTCCTTTCGCCCAATCTTCTCGTC CTGTATTTGTTTGTTCGCAAACCCAGGGGGCGGTGGCGCCGGCGGTGGCG CCGGCGGGGGTGGCGCCGGGGGCGCTGGCGGGGGCAACCAGCACCGCGGC CCCCCGCCCATGGCAGGGGGCGGGGGCCCCCGCGGAAGCGGGAACCAGAA CGCCAGGGTGTACGTGGGAAACCTGGCGTGGGACGTGGCGTGGCAGGACC TGAAGGACCACATGCGCGGCCTCGGCGGAGACGTCATCCGGGCCGACGTG ATGTCCGACCAGACGGGGCGGTCGCGCGGTTGCGGCATCGTCGAGTTCGC GGACCCGGACCAGGCCGGCCAGGCGATCGAGCAGCTCAACAACTCGGAGC TCAAGGGCCGCATGATCTTCGTCCGGGAGGTGAGGAGCCGGGGTGTGTGT GTGGGCTTTCTGTTGTTTTTATTGGTGTTGTTGTCTCGCGCGGCGTTTTT TTTTTTATTCGCCGTTTCTCCCCTCTCCGCCCCCCCCCCCCCTCCCCCTT TCAGTGGTGGGGGTGTGTGTGGGTGTTTTTGTGTTTTTCTGTGNNNNNNN NNNGCCCCGGCGGGCGTGTGTTTTTTTTTTCGCCGTTTCTCCCCTCCCCG CCCCCCCCCCCCTCTCCTCCTCTCATGTGTGTGTGTGTGTGTGTGTGTGT TTGTGTTTTTCTGCGTCATTTTTGTGTGTCGGTCTCCCATCAGAGCTGAT GTGCAGAGCGGGATGTTTTCACGACGGTTAAGATGTCGGCCGTGCCGCCC GTGTGTACTACTGTATACGGCCATGTGCTTGGCCGAGCAGGAGAGCAGCA GCGGCGTCTGCTCCTCGCCGAGTCGCACATTCCGCAGAGCTCTCTCCGTG CTCAAGTCGATACATGTGTACTTGGGTGTCTTTTTGCCTCTTCTGTTGGG CAGGCTTCTTCGCCCTTGTTGCTGGTCGGGAGAAGCGGCAGGAGTTCAGT CGGTCCGTGCTCTTTTGGCTTACCCGCTTTTGCACCCGTGTGCGTGGTGG TACTGTCTGGTGTACAAACATGTGTGCGCTCGATCTTTTATCGTCAGTGG TAGGTATCACCGCTGGCTGGCTGTGTCCGGCGTGTGTCGCCTCGCCCTTG CGGGACTAGACACGCTCGCGGCGTCCGCACGTAGAACGGGAGACCCTACC CATGTCATAGGTTGCGGGAGCCAGCGGGGCGGGCCTGCTCTCGGCGTCAG TGACGACACGATTGTTTTCTGACACACACGCCTCTTTGCTTTGCTTCGTT TTTTGTTTTTCAACCTGTCCAGGACCGCGAGAACGGCAACGGCGGTGGCG GCGGCCACCACGGCGGGCAGCACCAGCAGATGCACCAGCAGCAACAGCAA CAGCAGCAGCAGCAGATGGTGGGCCAGATGCAGATGGGGCCCATGGGCGG CTTCGCCGGGCAGCAGTTCGCCCCGGGCCCCCCCATGATGGGCCAGCCCA TGGGGGGCCACATGCAGCAGATGCAGATGCACCAGCAGCAGCAGCACCAG GGGGGCGGCGCCCCGATGCCCCAGGCCACGGGCAACCGCATCTACGTGGG CAACCTGGCGTGGACAGTGGAGTGGCAGGAGCTCAAGGACCACATGCGGA CGGTCGGGAAGGTGGTGCACGCGGACGTACTGCAGGACGGGGACGGCCGC TCGAAGGTGAGAGAGACACAGAGAGAGGTCGACACGGCAGAAAGAACAGA ATAAATGAGGGAGAAACAAACAATACATGCGCGGAACATTGAACGCGTAT GTTTTTTTTCATGTTTCTTTCTTGCATGCCTTGCAACGTGTGTGTGTTGT ATGTGTGTTTCCGTGAGCGTGAGTGTGGGTGTTTGTGTGCGCGAAAGAGA GAGAAGAGGCCCACTCCGAGAAAGAACGCCGATGTGTGTTTGGTCGACCG GCCGCATGCTAGCGACCACAACGGAGAGGGACACGACCGACGGCGCCCTT GACTCCCTTTCCTCCGCGGCGCCGAGCGGGCCGCTTGTCCCACCGGTCGT CTCCTCGTGTGTGAGGAGACTGGCTGTCCTCGTTTGTGATAAAATAAGGT TCATTATAATTATGTAGTTTCTCACGTGTTTGCTGTCTCGGCGGCGTGTT GCCGGTGCGGACACGATTGTTCAGGGCTGCGGCATCGTGGAGTACGAGGA CATCCGCGGCGCGAACCGCGCCATCAGAGAGCTCAACAACACCCCCCTCG GCGGCAGGCCCATCTTTGTGCGCGAGGACCGAGAGCAGCAGCACCCGCGC CAGAGGCGCGGGGGCGGCGGCGGGCGGGGGGGGCGGGGCGAGCAGGCGAA CGGCGGCGGTGGCCGTGGCGGTGGGAGGGGCGGAGGAGGTGACTTTGCCG GGCGCCAGCTGTACGTCGGCAACCTGTCGTTCGAGACCACCTGGGCCGAC CTGAAGGACCACTTCCGCACCTCGGGGGAGGTGGAGCGCGCGGACGTGAT GATGGATGGGTCGCGCAGGTCCAAGGGATGGGGCACCGTCCGGTTCAGTA CGCCGGTAAGGGGGCTGGATTTGTTCGCTTGGAAGCGCTGCCGTGACTTA ATTAGTCCCTTTTACGTGTTTTTTTTGTTTCCCCCGCGAGGCCCCGGTGC AGCCAGTTGGACTTCGGGGGCTCCGATATGGGTTTGAAAGGCGCAGGAGA GGGTTGTTGCTGGTCGCCCCCGGCTGCGGCAAAGGCAGGCAGGCTACTGC TGCCGCTGCTGTTGCGCTAAACTCAACGAGAGCCGACATTGGCGATTTTA CCGCTGCCCAAACAAACCCTTCCCCGCGCAAGCCCCCCGTCTCATATCCC TCCCTCCCTCCTCGCTCTCGCCGTATGTTCTGCCCTCGGGTGTTTCGTCT GGACTCCCTGCTGTTTTGTCTCTCTTCCTCTCTCCTCCGTTGCCGTCTCC CGCCTCTCCTTCTTCCACGCCGCCGAACTCAACCACACCCACGTCCCCGA TACAGGAGGAGGCCCAGACGGCTATCCAGGAGCTGAACGGCACCGAGCTC GGGTCCAGACAGATCGAGGTCAGGGAAGATAGCAAGACCGGGGGCGCCTC CAACAAGGCCAGCAACAAGGCCGCTGCCGCCGCCGCCTCTGCCACCACCG CTGCCGCCGCCCCGGTGGCAACCACCGAAGCTGCCGTGGCTGCACCGGCA GTCCCGGCGGCTGCTCCCATCAGCACCACGTCCTGATGCGGTCGTAGCAC TAAGCAGCACACCGCACGCCGCTTGTTGGTAGGGGGAGTAGATGTAGGCA ATTCTCGCAATGGTGAAGGCGAAAGAAAACACGACCCGATCGTTGTGGGG CGGGGTTGGGTAGGGAGGTAGGTTTCGCCGCGCAAGCACACGCGAGTTGT GGGCATGTCCGTTTTCTTCTCCGTTGGCCCTCTCCCTGCCGCTCTCTGTG TGTGCAGTGGGATTTTCTCGCACGGGAACCTTGCTTGTGTTCCATCTGCT TGTGTTCCATCTCCGCGAGAGAAGCGCGAATCCTTGCAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig669:13600..19691-

>mRNA_L-elsbetiae_contig669.15422.1 ID=mRNA_L-elsbetiae_contig669.15422.1|Name=mRNA_L-elsbetiae_contig669.15422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3474bp|location=Sequence derived from alignment at L-elsbetiae_contig669:13600..19691- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATACGTGGAGCAGCAGCCTGCCGCTCCGTTCGTGCAGGATGCCAA
CGGCATCGGCGGCGTCATGCCCGTGGTGGGCGCTATTCCACCCCCCCCCG
CCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCGACCGGCACCACC
CGTGTCTACGTGGGCAACCTCTCGTGGGAGACCGAGTGGCAGGATCTCAA
GGACCACATGCGGAGCGCGGGCGAGATGGGATACGTGGAGCAGCAGCCTG
CCGCTCCGTTCGTGCAGGATGCCAACGGCATCGGCGGCGTCATGCCCGTG
GTGGGCGCTATTCCACCCCCCCCCGCCGCCGCCGCCGCCGCCGCCGCCGC
TGCCGCCGCCGCGACCGGCACCACCCGTGTCTACGTGGGCAACCTCTCGT
GGGAGACCGAGTGGCAGGATCTCAAGGACCACATGCGGAGCGCGGGCGAG
GTAGTGCGAGCCGACGTCATGAAGGACGCCTCCGGCAGATCCAAGGGCTG
CGGCATCGTGGAGTACCGGACGCCGGCAGAGGCGCTGGAGGCCATCAACA
CGCTCCTCGACACGGAGCTCAAGGGGCGCCTGATCTTCGTCCGGGAAGAC
CGGGAGGCCGCTGGTAGTGCGAGCCGACGTCATGAAGGACGCCTCCGGCA
GATCCAAGGGCTGCGGCATCGTGGAGTACCGGACGCCGGCAGAGGCGCTG
GAGGCCATCAACACGCTCCTCGACACGGAGCTCAAGGGGCGCCTGATCTT
CGTCCGGGAAGACCGGGAGGCCGCTGGGGGCGGTGGCGCCGGCGGTGGCG
CCGGCGGGGGTGGCGCCGGGGGCGCTGGCGGGGGCAACCAGCACCGCGGC
CCCCCGCCCATGGCAGGGGGCGGGGGCCCCCGCGGAAGCGGGAACCAGAA
CGCCAGGGTGTACGTGGGAAACCTGGCGTGGGACGTGGCGTGGCAGGACC
TGAAGGACCACATGCGCGGCCTCGGCGGAGACGTCATCCGGGCCGACGTG
ATGTCCGACCAGACGGGGCGGTCGCGCGGTTGCGGCATCGTCGAGTTCGC
GGACCCGGACCAGGCCGGCCAGGCGATCGAGCAGCTCAACAACTCGGAGC
TCAAGGGCCGCATGATCTTCGTCCGGGAGGGGGCGGTGGCGCCGGCGGTG
GCGCCGGCGGGGGTGGCGCCGGGGGCGCTGGCGGGGGCAACCAGCACCGC
GGCCCCCCGCCCATGGCAGGGGGCGGGGGCCCCCGCGGAAGCGGGAACCA
GAACGCCAGGGTGTACGTGGGAAACCTGGCGTGGGACGTGGCGTGGCAGG
ACCTGAAGGACCACATGCGCGGCCTCGGCGGAGACGTCATCCGGGCCGAC
GTGATGTCCGACCAGACGGGGCGGTCGCGCGGTTGCGGCATCGTCGAGTT
CGCGGACCCGGACCAGGCCGGCCAGGCGATCGAGCAGCTCAACAACTCGG
AGCTCAAGGGCCGCATGATCTTCGTCCGGGAGGACCGCGAGAACGGCAAC
GGCGGTGGCGGCGGCCACCACGGCGGGCAGCACCAGCAGATGCACCAGCA
GCAACAGCAACAGCAGCAGCAGCAGATGGTGGGCCAGATGCAGATGGGGC
CCATGGGCGGCTTCGCCGGGCAGCAGTTCGCCCCGGGCCCCCCCATGATG
GGCCAGCCCATGGGGGGCCACATGCAGCAGATGCAGATGCACCAGCAGCA
GCAGCACCAGGGGGGCGGCGCCCCGATGCCCCAGGCCACGGGCAACCGCA
TCTACGTGGGCAACCTGGCGTGGACAGTGGAGTGGCAGGAGCTCAAGGAC
CACATGCGGACGGTCGGGAAGGTGGTGCACGCGGACGTACTGCAGGACGG
GGACGGCCGCTCGAAGGACCGCGAGAACGGCAACGGCGGTGGCGGCGGCC
ACCACGGCGGGCAGCACCAGCAGATGCACCAGCAGCAACAGCAACAGCAG
CAGCAGCAGATGGTGGGCCAGATGCAGATGGGGCCCATGGGCGGCTTCGC
CGGGCAGCAGTTCGCCCCGGGCCCCCCCATGATGGGCCAGCCCATGGGGG
GCCACATGCAGCAGATGCAGATGCACCAGCAGCAGCAGCACCAGGGGGGC
GGCGCCCCGATGCCCCAGGCCACGGGCAACCGCATCTACGTGGGCAACCT
GGCGTGGACAGTGGAGTGGCAGGAGCTCAAGGACCACATGCGGACGGTCG
GGAAGGTGGTGCACGCGGACGTACTGCAGGACGGGGACGGCCGCTCGAAG
GGCTGCGGCATCGTGGAGTACGAGGACATCCGCGGCGCGAACCGCGCCAT
CAGAGAGCTCAACAACACCCCCCTCGGCGGCAGGCCCATCTTTGTGCGCG
AGGACCGAGAGCAGCAGCACCCGCGCCAGAGGCGCGGGGGCGGCGGCGGG
CGGGGGGGGCGGGGCGAGCAGGCGAACGGCGGCGGTGGCCGTGGCGGTGG
GAGGGGCGGAGGAGGTGACTTTGCCGGGCGCCAGCTGTACGTCGGCAACC
TGTCGTTCGAGACCACCTGGGCCGACCTGAAGGACCACTTCCGCACCTCG
GGGGAGGTGGAGCGCGCGGACGTGATGATGGATGGGTCGCGCAGGTCCAA
GGGATGGGGCACCGTCCGGTTCAGTACGCCGGGCTGCGGCATCGTGGAGT
ACGAGGACATCCGCGGCGCGAACCGCGCCATCAGAGAGCTCAACAACACC
CCCCTCGGCGGCAGGCCCATCTTTGTGCGCGAGGACCGAGAGCAGCAGCA
CCCGCGCCAGAGGCGCGGGGGCGGCGGCGGGCGGGGGGGGCGGGGCGAGC
AGGCGAACGGCGGCGGTGGCCGTGGCGGTGGGAGGGGCGGAGGAGGTGAC
TTTGCCGGGCGCCAGCTGTACGTCGGCAACCTGTCGTTCGAGACCACCTG
GGCCGACCTGAAGGACCACTTCCGCACCTCGGGGGAGGTGGAGCGCGCGG
ACGTGATGATGGATGGGTCGCGCAGGTCCAAGGGATGGGGCACCGTCCGG
TTCAGTACGCCGGAGGAGGCCCAGACGGCTATCCAGGAGCTGAACGGCAC
CGAGCTCGGGTCCAGACAGATCGAGGTCAGGGAAGATAGCAAGACCGGGG
GCGCCTCCAACAAGGCCAGCAACAAGGCCGCTGCCGCCGCCGCCTCTGCC
ACCACCGCTGCCGCCGCCCCGGTGGCAACCACCGAAGCTGCCGTGGCTGC
ACCGGCAGTCCCGGCGGCTGCTCCCATCAGCACCACGTCCTGAGAGGAGG
CCCAGACGGCTATCCAGGAGCTGAACGGCACCGAGCTCGGGTCCAGACAG
ATCGAGGTCAGGGAAGATAGCAAGACCGGGGGCGCCTCCAACAAGGCCAG
CAACAAGGCCGCTGCCGCCGCCGCCTCTGCCACCACCGCTGCCGCCGCCC
CGGTGGCAACCACCGAAGCTGCCGTGGCTGCACCGGCAGTCCCGGCGGCT
GCTCCCATCAGCACCACGTCCTGA
back to top