mRNA_L-elsbetiae_contig6689.15420.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6689.15420.1
Unique NamemRNA_L-elsbetiae_contig6689.15420.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.250e-49
Identity = 88/113 (77.88%), Postives = 103/113 (91.15%), Query Frame = 2 
Query:   14 EAQEARLAVVRWQAALDKCKAVWKELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRFSPALLADNLDKV 352
            EA  ARLA+ +WQ+A+DKCK VWKEL+GVPLLPLANGTAGSFP++F L G  R+RF++GTRRQQGLLP+L  RFVHLKATRRLARFFERD+FLE+MGIVRFSPALLA+NLD+V
Sbjct: 2989 EAHAARLALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTTFALAG--RKRFVVGTRRQQGLLPKLTNRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENLDQV 3099
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.030e-48
Identity = 86/113 (76.11%), Postives = 101/113 (89.38%), Query Frame = 2 
Query:   14 EAQEARLAVVRWQAALDKCKAVWKELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRFSPALLADNLDKV 352
            EA  AR A+ +WQ+A+DKCK VWKEL+GVPLLPLANGTAGSFP++F L G  R+RF++GTRRQQGLLP+L  RFVHLKATRRLARFFERD+FLE+MGIVRFSP LLA+NLD+V
Sbjct: 1030 EAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAG--RKRFVVGTRRQQGLLPKLADRFVHLKATRRLARFFERDDFLEMMGIVRFSPTLLAENLDQV 1140
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: A0A7S2UD61_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD61_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.180e-7
Identity = 29/89 (32.58%), Postives = 54/89 (60.67%), Query Frame = 2 
Query:   86 ELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRFSPALLADNLDKV 352
            E+RG+ L+PLA+G+ G+   SF          I+ + +QQ LLP +  +F+ + A +RL +F ++  F+  + +V F+P +LA+++  V
Sbjct: 2412 EIRGLVLMPLADGSVGTMGRSF----------IVASAQQQRLLPTITNKFMSISAMQRLDKFLKKPGFMNAIDLVEFTPQVLANHMFSV 2490
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.200e-7
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 2 
Query:   50 QAALDKCKAVWKELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRFSPALLADNLDKV 352
            QAAL +CK   ++L G+P+LPL++G+ G   S          + I+    QQ +LP L  +F+      RL  FF +   LE++ +  FSP +LA N+  V
Sbjct: 3576 QAAL-QCK---RQLTGLPILPLSDGSMGRIGS----------QIIVADTEQQSMLPMLNNKFLSSHVLERLQHFFSKPGSLELLSLETFSPKVLARNIQNV 3662
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: A0A7S2RGC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGC1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.910e-7
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 2 
Query:   86 ELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRF 316
            EL+G+ L+PL++GT G+F         GRQ  IL +  QQ LLP LK +F+   A  +L ++ ++  FL+I G+V+F
Sbjct:   60 ELKGLCLVPLSDGTVGTF---------GRQ-MILASPEQQSLLPNLKSKFISHCAFNQLKQYLDKPGFLDICGLVKF 126
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BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-6
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 2 
Query:   41 VRWQAALDKCKAVWKELRGVPLLPLANGTAGSFPSSFLLGGGGRQRFILGTRRQQGLLPQLKGRFVHLKATRRLARFFERDEFLEIMGIVRFSPALLAD 337
            +R Q+   +   +W+ELRGVPLLPL +G+   F +S     G  +  +L TR Q  LLP     +V   A  R  + F+  +F  +MGI  F  ++LA+
Sbjct:   38 MRQQSLEAQATTIWRELRGVPLLPLEDGSVACFGAS-----GSSRAPVLATRMQMSLLPA-PYLYVSQAAVARFPQVFQSADFRRVMGIRVFDSSVLAE 130
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6689.15420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K688_9PHAE1.250e-4977.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG4_ECTSI2.030e-4876.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2UD61_9STRA5.180e-732.58Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3QAL4_9STRA5.200e-734.65Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2RGC1_9STRA8.910e-740.26Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6U4DDX2_9STRA1.730e-635.35Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6689contigL-elsbetiae_contig6689:8734..10006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size356
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6689.15420.1prot_L-elsbetiae_contig6689.15420.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6689 8736..10006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.9593425-CDS-L-elsbetiae_contig6689:8735..87941622816739.9593425-CDS-L-elsbetiae_contig6689:8735..8794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8736..8794 -
1691683778.0274808-CDS-L-elsbetiae_contig6689:8735..87941691683778.0274808-CDS-L-elsbetiae_contig6689:8735..8794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8736..8794 -
1622816739.9700894-CDS-L-elsbetiae_contig6689:9368..96291622816739.9700894-CDS-L-elsbetiae_contig6689:9368..9629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 9369..9629 -
1691683778.0384161-CDS-L-elsbetiae_contig6689:9368..96291691683778.0384161-CDS-L-elsbetiae_contig6689:9368..9629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 9369..9629 -
1622816739.9799683-CDS-L-elsbetiae_contig6689:9972..100061622816739.9799683-CDS-L-elsbetiae_contig6689:9972..10006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 9973..10006 -
1691683778.048707-CDS-L-elsbetiae_contig6689:9972..100061691683778.048707-CDS-L-elsbetiae_contig6689:9972..10006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 9973..10006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6689.15420.1

>prot_L-elsbetiae_contig6689.15420.1 ID=prot_L-elsbetiae_contig6689.15420.1|Name=mRNA_L-elsbetiae_contig6689.15420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
VGLKGGSGSQAGRGAVASRPRQVQGGVERAPRSASAAPGEWHRGVLPVVV
LVGGGWQAEIYPRHAAAARATAAAEGSVRAPQGHEETGPVLRARRVLGDY
GHRTLFPGPPGRQPRQSP
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mRNA from alignment at L-elsbetiae_contig6689:8734..10006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6689.15420.1 ID=mRNA_L-elsbetiae_contig6689.15420.1|Name=mRNA_L-elsbetiae_contig6689.15420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1273bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:8734..10006- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGACTCAAGGGAGGCTCAGGAAGCCAGGCTGGTGAGCTTTTCGGAGC
CAGAACCGCGGGGTCATGATCCTCGGGAGTTCTGTTGAGGGCGCACATCG
AGTATCGAGTGTCGGGTGTTGAGTGTTGGGTGTCCAGTATCGGTTCAAGT
GTCTTGGGAGGCTGAGTGAGGAAAAGAGATTCAAGCTAACATGATACGCA
AGCGCCCCGTCGGGAGAGTAGGCTCTAGAGTTGTTGTAGATTCTCGTGTG
GATGCGCCGAGCCCGCAGGGCGCAGAAGTGCGCCCCATGTTCGCACACCG
CTGGTTGTTGACTTCCTAGCGACGGCGAATATTCATGTTATCACCGCCCC
GTGGTTGCTTGATTTATCATCCTTCAGGCCGTGGTGCGGTGGCAAGCCGC
CCTCGACAAGTGCAAGGCGGTGTGGAAAGAGCTCCGAGGAGTGCCTCTGC
TGCCCCTGGCGAATGGCACCGCGGGGTCCTTCCCGTCGTCGTTCTTGTTG
GGGGGGGGTGGCAGGCAGAGATTTATCCTCGGCACGCGGCGGCAGCAAGG
GCTACTGCCGCAGCTGAAGGGTCGGTTCGTGCACCTCAAGGCCACGAGGA
GACTGGCCCGGTTCTTCGAGCGCGACGAGTTCTTGGAGGTTGGTGTAGCT
TTTGGTTACTCGGACAACCTCGTTGGCAGTCTCACGTGGGGCGGTATCGT
TGGCAGTTTCATCAACGGCAGTTTTGTTGATGCCTGCAGTAGGGTTGGCA
TGGCTGTTGACAGTCTTGTTGACGGTCTCGTCGACAGCAGTCTCGTGGGC
ACGGTGATTGTGGGCATGGATGGTTGTTGGCGTAAGCACGATAACGTCAA
CGACACTCTGTGGAAAGTATACCTACCGTTGCATCCGTTTTTTCTCAACG
AGGCTTGGTGTCATCGTTGTGCACACGTGGTGCTGATCGTTGGCTTCCTT
GGAGTCTGGTTGGTCTAACCGAAAATCAACGAATCGATGACTGCCGCACG
GATGCGTGTCGTAAGATCCCTGCTCACTTCATCATTCCATTCGGAGCAAG
AGGGATTATAATTCCGTGGGGTTCTCTTGAGTCTCGAGTCGATCAGTCTC
AGGTGACTTGATGTCACCCTCAAGTCACGCTCGGTCTGTCTCCAAATCAA
AGCGAGAGCACCGTGGATCAATACCCCCCCTCCCCCCTCCCCCCCTCTCG
CCTCTTTCTCAGATTATGGGCATCGTACGCTTTTCCCCGGCCCTCCTGGC
CGACAACCTCGACAAAGTCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6689:8734..10006-

>mRNA_L-elsbetiae_contig6689.15420.1 ID=mRNA_L-elsbetiae_contig6689.15420.1|Name=mRNA_L-elsbetiae_contig6689.15420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:8734..10006- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGACTCAAGGGAGGCTCAGGAAGCCAGGCTGGTGGGACTCAAGGGAG
GCTCAGGAAGCCAGGCTGGCCGTGGTGCGGTGGCAAGCCGCCCTCGACAA
GTGCAAGGCGGTGTGGAAAGAGCTCCGAGGAGTGCCTCTGCTGCCCCTGG
CGAATGGCACCGCGGGGTCCTTCCCGTCGTCGTTCTTGTTGGGGGGGGGT
GGCAGGCAGAGATTTATCCTCGGCACGCGGCGGCAGCAAGGGCTACTGCC
GCAGCTGAAGGGTCGGTTCGTGCACCTCAAGGCCACGAGGAGACTGGCCC
GGTTCTTCGAGCGCGACGAGTTCTTGGAGGCCGTGGTGCGGTGGCAAGCC
GCCCTCGACAAGTGCAAGGCGGTGTGGAAAGAGCTCCGAGGAGTGCCTCT
GCTGCCCCTGGCGAATGGCACCGCGGGGTCCTTCCCGTCGTCGTTCTTGT
TGGGGGGGGGTGGCAGGCAGAGATTTATCCTCGGCACGCGGCGGCAGCAA
GGGCTACTGCCGCAGCTGAAGGGTCGGTTCGTGCACCTCAAGGCCACGAG
GAGACTGGCCCGGTTCTTCGAGCGCGACGAGTTCTTGGAGATTATGGGCA
TCGTACGCTTTTCCCCGGCCCTCCTGGCCGACAACCTCGACAAAGTCCTA
TTATGGGCATCGTACGCTTTTCCCCGGCCCTCCTGGCCGACAACCTCGAC
AAAGTCCT
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