mRNA_L-elsbetiae_contig6689.15419.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6689.15419.1
Unique NamemRNA_L-elsbetiae_contig6689.15419.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6689.15419.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.300e-41
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 PKAAWLALFWSEVSLLDVASVPGLGHWPLVPITTGELVSCSLLQQIVRACPSMLNEVKKRGLGVALATVKRTENAADERDEKELQDILAQQRQDQAREANP 303
            PKA+WLALFW+EVSLLDVASVPGLG WPLVPITTGELVSCS+LQQ+VRACPSMLNEVK+RGLGVALA ++R E AADERDE ELQ++LA+Q    A+EA+P
Sbjct: 1165 PKASWLALFWTEVSLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRACPSMLNEVKQRGLGVALAAMERAEKAADERDENELQELLARQ----AQEADP 1261
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BLAST of mRNA_L-elsbetiae_contig6689.15419.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.750e-32
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 PKAAWLALFWSEVSLLDVASVPGLGHWPLVPITTGELVSCSLLQQIVRACPSMLNEVKKRGLGVALATVKRTE 219
            PKA+WLALFW+EVSLLDVASVPGLG WPLVPITTGELVSCS+LQQ+VRACPSMLNEVKKRGL VALA V+R E
Sbjct: 3124 PKASWLALFWTEVSLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRACPSMLNEVKKRGLEVALAAVERAE 3196
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BLAST of mRNA_L-elsbetiae_contig6689.15419.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.700e-10
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   13 WLALFWSEVSLLDVASVPGLGHWPLVPITTGELVSCSLLQQIVRACPSMLNEVKKRGLGVA 195
            W+A FW EV + D A V  L  WPLVPITTGEL SCSL   I RACP  ++   +R L  A
Sbjct: 4421 WVAAFWREVPMSDAALVAALHEWPLVPITTGELASCSLAPSIFRACPGAIHADTQRRLDAA 4481
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BLAST of mRNA_L-elsbetiae_contig6689.15419.1 vs. uniprot
Match: A0A7S3XNM4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNM4_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 3.040e-6
Identity = 31/79 (39.24%), Postives = 40/79 (50.63%), Query Frame = 1 
Query:    1 PKAAWLALFWSEVSLLDVASVPGLGHWPLVPITTGELVSCSLLQQIVRACPSMLNEVKKRGLGVALATVKRTENAADER 237
            P   WL  FW EVSLLD  +V     WPL+P T+GEL+SC      +R C  +++      L  A A   R   A +ER
Sbjct:  122 PSRVWLYKFWQEVSLLDAHAVAAFRAWPLLPTTSGELLSCGSADIGLRLCDQVVDGQLSGRLERAAAAEGRELKAREER 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6689.15419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJG4_ECTSI3.300e-4179.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K688_9PHAE1.750e-3287.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YL62_9STRA1.700e-1054.10RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XNM4_HETAK3.040e-639.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6689contigL-elsbetiae_contig6689:6988..8647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue4.7e-37
Seed eggNOG ortholog2880.D8LJG4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size637
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6689.15419.1prot_L-elsbetiae_contig6689.15419.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6689 6990..8647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.8969102-CDS-L-elsbetiae_contig6689:6989..73791622816739.8969102-CDS-L-elsbetiae_contig6689:6989..7379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 6990..7379 -
1691683777.9949677-CDS-L-elsbetiae_contig6689:6989..73791691683777.9949677-CDS-L-elsbetiae_contig6689:6989..7379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 6990..7379 -
1622816739.9102294-CDS-L-elsbetiae_contig6689:8063..81711622816739.9102294-CDS-L-elsbetiae_contig6689:8063..8171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8064..8171 -
1691683778.00657-CDS-L-elsbetiae_contig6689:8063..81711691683778.00657-CDS-L-elsbetiae_contig6689:8063..8171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8064..8171 -
1622816739.9246955-CDS-L-elsbetiae_contig6689:8512..86471622816739.9246955-CDS-L-elsbetiae_contig6689:8512..8647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8513..8647 -
1691683778.016882-CDS-L-elsbetiae_contig6689:8512..86471691683778.016882-CDS-L-elsbetiae_contig6689:8512..8647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 8513..8647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6689.15419.1

>prot_L-elsbetiae_contig6689.15419.1 ID=prot_L-elsbetiae_contig6689.15419.1|Name=mRNA_L-elsbetiae_contig6689.15419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
PKAAWLALFWSEVSLLDVASVPGLGHWPLVPITTGELVSCSLLQQIVRAC
PSMLNEVKKRGLGVALATVKRTENAADERDEKELQDILAQQRQDQAREAN
PAESDDEGEDEDEDEDDDFLDFADDLEVEEEKGAAGGEAGVSGAGGLGSA
EDELESVEDASPDSSGDEYASTAGSPGQGRRAGYPAGSNAPVAAGTPPGP
PGRPSQSPANV
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mRNA from alignment at L-elsbetiae_contig6689:6988..8647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6689.15419.1 ID=mRNA_L-elsbetiae_contig6689.15419.1|Name=mRNA_L-elsbetiae_contig6689.15419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1660bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:6988..8647- (Laminarionema elsbetiae ELsaHSoW15)
CCGAAAGCGGCGTGGCTGGCTCTATTTTGGAGCGAGGTGTCGCTGCTGGA
TGTTGCGTCCGTTCCGGGGCTGGGACATTGGCCACTGGTGCCCATCACGA
CTGGGGAGCTCGTTTCTTGCTCTCTCCTTCAGCAGGTATCGGTAGTAGCG
AGGGTGCGTGCGTGTGTGTTATGTGTCTGCATATATTTATGAAGCCGTGC
GTTGTGCGCCCGCACTTGTCTGGTCACGAGGAGCAGAATGTTTTCACGTA
AGTACCGCCACACCCAGCGACCTCATGATACCTTATTGTAAACTCCCTAC
AGCAGTTGCTGCGAGCGAACCATTGACCCTGAAAGTTTTCGAGTTTTCGT
AGATATTTCGTATGCAACAATCGAAAAGCGAGGGCGCTAGACGCCGAATA
ATTTAGTGCATGCCCTGGAAGAGACGTATCTTGATGTGTTTATATGCGGT
CGCGTGGCGTGTGATGTGCGTGGCAGATCGTTCGAGCGTGCCCGAGCATG
CTGAACGAGGTGAAGAAGAGGGGACTCGGCGTCGCCCTGGCTACGGTTAA
GCGCACCGAGAACGCGGCAGATGAAAGAGACGAGGTAAGATAACAGGCAG
GCAGACAGGCAGACCCACAGATGAGGCGAGATAGTTGGGGTCGGCCAATG
GGGGTGCTGAGTGGAATCATCGCCTTCTTGCTGTCATCGTGGTGTTTGTG
TGTTAGCCGGCCATCTATTAACTACTGTGGTTGTTTTTGGTGCGGGGGAC
ACAAAATCTGACACTCAGAGCATTTCGTTGCTTGATTGCTGATGGTTGCC
TTGTGCCACCATCTTGCGAGAGCGTCTCACGAGAGCATCTTGGCGGCAAG
TGCCCTGTGCTGCCATGATAGCCTCTTGTCCGACGTCCCCCTCCCCTCTC
TATCGGTGCGTGCGGTCTGGGAAATGCGTTCACCGCGCACATACTTGTTT
AGACCGACAAGTTAGCAACCGTTACAAGCGCCAACATCTTGGGGAAGGAA
GAGTTGAGAAGGCAGGGTGTAAAAGGTGTAGGAGGTGTATATGGCGTCAC
GAGCTCGATTCAGCGTTCCAGTGTACTTCGAAGTATGTAGCAAGCAGTCG
AACGTCGAACGTGTGAGTGACGGAACACCGTTGTTGCCACGCACAGCAGT
GAAGCACGTATATCTCTACCCTGTCTCTACTACTCTACTAGTGGGGCCCA
CCCCACCCATTGCCCCACCCCCCTCATACCGCCCCTCGTCCCCATTTTAT
TCCGGTCGCGGCCTGCAGAAAGAGCTGCAGGACATCTTGGCCCAGCAGCG
GCAAGACCAAGCACGGGAGGCCAACCCCGCGGAGAGCGACGACGAAGGCG
AGGATGAAGACGAAGATGAAGACGACGACTTCCTAGACTTTGCAGACGAC
TTGGAGGTGGAGGAAGAGAAGGGGGCAGCGGGCGGCGAGGCAGGAGTAAG
CGGTGCGGGCGGTCTGGGCAGCGCCGAGGACGAGCTTGAGTCGGTGGAGG
ACGCCTCCCCTGACAGCAGCGGTGATGAGTACGCCAGTACAGCCGGCTCG
CCGGGTCAAGGTCGGCGTGCGGGTTATCCAGCCGGAAGCAACGCGCCCGT
TGCTGCGGGAACGCCCCCGGGACCCCCTGGACGGCCCTCGCAATCGCCCG
CTAACGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6689:6988..8647-

>mRNA_L-elsbetiae_contig6689.15419.1 ID=mRNA_L-elsbetiae_contig6689.15419.1|Name=mRNA_L-elsbetiae_contig6689.15419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:6988..8647- (Laminarionema elsbetiae ELsaHSoW15)
CCGAAAGCGGCGTGGCTGGCTCTATTTTGGAGCGAGGTGTCGCTGCTGGA
TGTTGCGTCCGTTCCGGGGCTGGGACATTGGCCACTGGTGCCCATCACGA
CTGGGGAGCTCGTTTCTTGCTCTCTCCTTCAGCAGCCGAAAGCGGCGTGG
CTGGCTCTATTTTGGAGCGAGGTGTCGCTGCTGGATGTTGCGTCCGTTCC
GGGGCTGGGACATTGGCCACTGGTGCCCATCACGACTGGGGAGCTCGTTT
CTTGCTCTCTCCTTCAGCAGATCGTTCGAGCGTGCCCGAGCATGCTGAAC
GAGGTGAAGAAGAGGGGACTCGGCGTCGCCCTGGCTACGGTTAAGCGCAC
CGAGAACGCGGCAGATGAAAGAGACGAGATCGTTCGAGCGTGCCCGAGCA
TGCTGAACGAGGTGAAGAAGAGGGGACTCGGCGTCGCCCTGGCTACGGTT
AAGCGCACCGAGAACGCGGCAGATGAAAGAGACGAGAAAGAGCTGCAGGA
CATCTTGGCCCAGCAGCGGCAAGACCAAGCACGGGAGGCCAACCCCGCGG
AGAGCGACGACGAAGGCGAGGATGAAGACGAAGATGAAGACGACGACTTC
CTAGACTTTGCAGACGACTTGGAGGTGGAGGAAGAGAAGGGGGCAGCGGG
CGGCGAGGCAGGAGTAAGCGGTGCGGGCGGTCTGGGCAGCGCCGAGGACG
AGCTTGAGTCGGTGGAGGACGCCTCCCCTGACAGCAGCGGTGATGAGTAC
GCCAGTACAGCCGGCTCGCCGGGTCAAGGTCGGCGTGCGGGTTATCCAGC
CGGAAGCAACGCGCCCGTTGCTGCGGGAACGCCCCCGGGACCCCCTGGAC
GGCCCTCGCAATCGCCCGCTAACGTGAAAGAGCTGCAGGACATCTTGGCC
CAGCAGCGGCAAGACCAAGCACGGGAGGCCAACCCCGCGGAGAGCGACGA
CGAAGGCGAGGATGAAGACGAAGATGAAGACGACGACTTCCTAGACTTTG
CAGACGACTTGGAGGTGGAGGAAGAGAAGGGGGCAGCGGGCGGCGAGGCA
GGAGTAAGCGGTGCGGGCGGTCTGGGCAGCGCCGAGGACGAGCTTGAGTC
GGTGGAGGACGCCTCCCCTGACAGCAGCGGTGATGAGTACGCCAGTACAG
CCGGCTCGCCGGGTCAAGGTCGGCGTGCGGGTTATCCAGCCGGAAGCAAC
GCGCCCGTTGCTGCGGGAACGCCCCCGGGACCCCCTGGACGGCCCTCGCA
ATCGCCCGCTAACGTG
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