mRNA_L-elsbetiae_contig6689.15418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6689.15418.1
Unique NamemRNA_L-elsbetiae_contig6689.15418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6689.15418.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.160e-18
Identity = 78/102 (76.47%), Postives = 81/102 (79.41%), Query Frame = -1 
Query:    1 APGPVP-EPPRLKVLVSVLRRLGVPVLELAFFPAEQRSWLVVSDPNEAARGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELIASGEDH 303
            A GP P EPPRLKVLV+VLRRLGVPVLELAFFP EQR WLVV DPNEA+RGAL              XXXXXXXXXXXXXXXXXXXXXXXXX E+IASGEDH
Sbjct: 3386 ASGPAPAEPPRLKVLVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDH 3487
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BLAST of mRNA_L-elsbetiae_contig6689.15418.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.260e-13
Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = -1 
Query:    1 VLVSVLRRLGVPVLELAFFPAEQRSWLVVSDPNEAARGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELIASGEDH 267
            VLV+VLRRLGVPVLELAFFP EQR WLVV DPNEA+RGAL              XXXXXXXXXXXXXXXXXXXXXXXXX E+IASGEDH
Sbjct: 1315 VLVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDH 1403
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6689.15418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K688_9PHAE3.160e-1876.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG4_ECTSI4.260e-1376.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6689contigL-elsbetiae_contig6689:6405..6728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.0123906-CDS-L-elsbetiae_contig6689:6404..67281622816740.0123906-CDS-L-elsbetiae_contig6689:6404..6728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 6405..6728 +
1691683778.0646985-CDS-L-elsbetiae_contig6689:6404..67281691683778.0646985-CDS-L-elsbetiae_contig6689:6404..6728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6689 6405..6728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6689.15418.1prot_L-elsbetiae_contig6689.15418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6689 6405..6728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6689.15418.1

>prot_L-elsbetiae_contig6689.15418.1 ID=prot_L-elsbetiae_contig6689.15418.1|Name=mRNA_L-elsbetiae_contig6689.15418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MVLAARNQLRHRRHRLPLGPLGRRRPPSLTDLRYRIHRGECVSKGMDSAE
SASGSFVRVAHDQPRPLLGREKRQLKNGNSQPPQHGHQDLQAWGLRHGAR
CCRRRRPS
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mRNA from alignment at L-elsbetiae_contig6689:6405..6728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6689.15418.1 ID=mRNA_L-elsbetiae_contig6689.15418.1|Name=mRNA_L-elsbetiae_contig6689.15418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:6405..6728+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCTCGCCGCTCGCAATCAGCTCCGCCATCGCCGCCATCGCCTCCC
CCTCGGCCCCCTCGGCCGCCGCCGCCCTCCGAGCCTCACAGACCTCCGAT
ATCGGATACATCGGGGCGAGTGTGTTTCGAAGGGCATGGATAGCGCCGAG
AGCGCCTCTGGCAGCTTCGTTAGGGTCGCTCACGACCAACCACGACCGCT
GCTCGGCAGGGAAAAACGCCAGCTCAAGAACGGGAACTCCCAGCCGCCGC
AGCACGGACACCAGGACCTTCAGGCGTGGGGGCTCCGGCACGGGGCCCGG
TGCTGCCGCCGCCGCCGCCCTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6689:6405..6728+

>mRNA_L-elsbetiae_contig6689.15418.1 ID=mRNA_L-elsbetiae_contig6689.15418.1|Name=mRNA_L-elsbetiae_contig6689.15418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig6689:6405..6728+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCTCGCCGCTCGCAATCAGCTCCGCCATCGCCGCCATCGCCTCCC
CCTCGGCCCCCTCGGCCGCCGCCGCCCTCCGAGCCTCACAGACCTCCGAT
ATCGGATACATCGGGGCGAGTGTGTTTCGAAGGGCATGGATAGCGCCGAG
AGCGCCTCTGGCAGCTTCGTTAGGGTCGCTCACGACCAACCACGACCGCT
GCTCGGCAGGGAAAAACGCCAGCTCAAGAACGGGAACTCCCAGCCGCCGC
AGCACGGACACCAGGACCTTCAGGCGTGGGGGCTCCGGCACGGGGCCCGG
TGCTGCCGCCGCCGCCGCCCTAGCATGGTCCTCGCCGCTCGCAATCAGCT
CCGCCATCGCCGCCATCGCCTCCCCCTCGGCCCCCTCGGCCGCCGCCGCC
CTCCGAGCCTCACAGACCTCCGATATCGGATACATCGGGGCGAGTGTGTT
TCGAAGGGCATGGATAGCGCCGAGAGCGCCTCTGGCAGCTTCGTTAGGGT
CGCTCACGACCAACCACGACCGCTGCTCGGCAGGGAAAAACGCCAGCTCA
AGAACGGGAACTCCCAGCCGCCGCAGCACGGACACCAGGACCTTCAGGCG
TGGGGGCTCCGGCACGGGGCCCGGTGCTGCCGCCGCCGCCGCCCTAGC
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