mRNA_L-elsbetiae_contig668.15414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig668.15414.1 vs. uniprot
Match: D8LGG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG0_ECTSI) HSP 1 Score: 396 bits (1018), Expect = 1.650e-135 Identity = 216/303 (71.29%), Postives = 225/303 (74.26%), Query Frame = 2 Query: 50 MLAKHKIKWAIMNPGEDMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTKASIAFGSAKTVYESDAMSRQKDILGAPPRGEDQKRNKELKQALTRTHFKFGDEPMVYERTSELPDPTGHLDDYTGVLNTEVKNMIKSTNLSFGNAPTKYRTMATDQMDLQIPQGEDRGAQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKLAGNNGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQRASGGMVSTAEERQAQIDKNKALKKQLQTTHYEIGTDDDYM 958 MLAKHKIKWAIMN GE+MPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNT+AS+AFGSAK +YESDAMSRQKDILGAPPRGED+KRNKELKQALTRTHF FG+EPMVYERTS LPDPTGHLDDYTGVLNT RTMATDQMDLQ+PQGEDRG QLEKNRQLKV KLAGN GLAKEV AMRTQRASGGMV+TAEERQAQIDKN+ALKKQLQTTHYEIGTDDDYM Sbjct: 1 MLAKHKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQVPQGEDRGVQLEKNRQLKV-------------------------------KLAGNRGLAKEVKADLSRTHFTLGNHKFDWQTDAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 272
BLAST of mRNA_L-elsbetiae_contig668.15414.1 vs. uniprot
Match: A0A835YW84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW84_9STRA) HSP 1 Score: 171 bits (434), Expect = 4.020e-47 Identity = 120/301 (39.87%), Postives = 151/301 (50.17%), Query Frame = 2 Query: 200 MIRELEQRKLRNTKASIAFGSAKTVYESDAMSR-------------------QKDILGAPPRGEDQKRNKELKQALTRTHFKFGDEPMVYERTSELPDPTGHLDDYTGVLNTEVKNMIKSTNLSFG-------------------------NAPTKYRTMATDQMDLQIPQG---EDRGAQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKLAGNNGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQR-ASGGMVSTAEERQAQIDKNKALKKQLQTTHYEIGTDDDYM 958 M EL +RKL NT+ SIA GSA TVYE+DA + QKDIL + G D++ N+ LK LTRT F GDE + Y+R S LPDPTG L ++TGVLN EVK M+K +N+ FG NA Y T A + M G D A L+ NR LKVALTRT+ FG+E +Y +D++ GF+YD ++VK AG L+KEV A R R A S EE Q + N+ LK+ LQ T+Y IGTD DYM Sbjct: 1 MASELHRRKLNNTRTSIALGSAPTVYETDAQGQLPAPMYATLHCGRYESQAHQKDILSSHSAGADREHNRLLKAQLTRTTFSLGDERVDYQRVSALPDPTGRLHEFTGVLNAEVKEMMKRSNMYFGEPGGNFAKGHVLRNPALLLRLPLPGNAAPSYDTAAHEGMQAVGASGVAAADMQATLQHNRDLKVALTRTNLNFGDEVPEYVSDYKRGFKYDADEVKSAGRACLSKEVKDDLRRSHFKFGTDPVVWETDARRNMRQAEQAEHSGPEEVARQREHNRLLKQSLQRTNYAIGTDADYM 301
BLAST of mRNA_L-elsbetiae_contig668.15414.1 vs. uniprot
Match: A0A7S2FEP3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEP3_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 5.160e-15 Identity = 83/275 (30.18%), Postives = 114/275 (41.45%), Query Frame = 2 Query: 101 MPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTKASIAFGSAKTVYESDAMSRQKDILGAPPRGEDQKRNKELKQALTRTHFKFG-DEPMVYERTSE----LPDPTGHLDDYTGVLNTEVK--NMIKSTNLSFGN----------------------APTKYRTMATDQ------MDLQIPQGEDRGAQLEKNRQLKVA---------------------------LTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKLAGNN 739 MPS KRF TT + E VA RR EV +R M L RKL NT+ SI FGS VYESDAM RQKDILG G D K KELK L +++ G D Y T+ P+ T ++ V ++K IK++++ G+ A K +TM + + P GED L K+ + + L ++HF+ G E+ +Y TD Q G+ P ++ N Sbjct: 1 MPS----KRFTTTLNSSLEAVAKRRDEVENRQQMSASLRGRKLANTQTSIVFGSDSVVYESDAMRRQKDILGNKSAGADAKACKELKLGLQKSNIAIGTDSDTSYSTTTGGAFFYPEKTTTREEDMKVAEDKLKLKMAIKTSSIKLGSDVGTYSTTSGSALEYKGNDNNFAEMKMKTMKLKRDLGGHNFEFAHPVGEDGDEALAKDERFMTSSALALPSYEYARYGDTRATLSTEAKGDLRKSHFELGYEKTEYRTDQQDGYPERPIDKEIREEN 271 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig668.15414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig668.15414.1 >prot_L-elsbetiae_contig668.15414.1 ID=prot_L-elsbetiae_contig668.15414.1|Name=mRNA_L-elsbetiae_contig668.15414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=305bp MMLAKHKIKWAIMNPGEDMPSPRATKRFETTSLAGTEYVASRRGEVPDRGback to top mRNA from alignment at L-elsbetiae_contig668:28073..32211+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig668.15414.1 ID=mRNA_L-elsbetiae_contig668.15414.1|Name=mRNA_L-elsbetiae_contig668.15414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4139bp|location=Sequence derived from alignment at L-elsbetiae_contig668:28073..32211+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig668:28073..32211+ >mRNA_L-elsbetiae_contig668.15414.1 ID=mRNA_L-elsbetiae_contig668.15414.1|Name=mRNA_L-elsbetiae_contig668.15414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1830bp|location=Sequence derived from alignment at L-elsbetiae_contig668:28073..32211+ (Laminarionema elsbetiae ELsaHSoW15)back to top |