mRNA_L-elsbetiae_contig668.15411.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig668.15411.1
Unique NamemRNA_L-elsbetiae_contig668.15411.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: D8LGG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.510e-46
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 MTDVVTERAQDANKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQCLAKSGG 306
            M D V++  +   +D +LTKEKSYLFEER+ETA +LRQLGNERFKRG M+DAA AYER+L+H+DFDELQINFDF+DKHRE+LT AKLPVLLNLCQCLAK GG
Sbjct:    1 MADAVSQVVEGETEDDLLTKEKSYLFEERLETAGRLRQLGNERFKRGCMEDAAEAYERALHHVDFDELQINFDFSDKHRESLTAAKLPVLLNLCQCLAKLGG 102          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A6H5K9H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.230e-46
Identity = 85/130 (65.38%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 MTDVVTERAQDANKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQCLAKSGGG--------------RGENAGRAAEHAG 348
            M D V++  +   +D +LTKEKSYLFEER+ETA +LRQLGNERFKRG M+ AA AYER+L+H+DFDELQINFDF+DKHRE+LT AKLPVLLNLCQCLAK GG               R +NAGRAAE AG
Sbjct:    1 MADAVSQVVEGETEDDLLTKEKSYLFEERLETAGRLRQLGNERFKRGRMEGAAEAYERALHHVDFDELQINFDFSDKHRESLTTAKLPVLLNLCQCLAKLGGSARGGXXXXXXXXXXRSDNAGRAAEFAG 130          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A024U9S3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9S3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.740e-14
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   43 DSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            + ++TKE+S++FE R+E A++ ++LG E  K      A   YER+LYH+DFDE    F+  D HR+ +   +LPV LNL  C
Sbjct:    9 EELMTKERSFIFETRVEDAKQCKELGAEAHKANERNRAIQFYERALYHVDFDEATWAFELLDNHRDVVNDVRLPVYLNLAAC 90          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: W4GXF3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXF3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.890e-14
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   37 NKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            +++ ++TKE+SY+FE R+E A++ ++LG    K      A   YER+LYH+DFDE    F+  D HR+ +   +LPV LNL  C
Sbjct:    7 SQEELMTKERSYIFEARVEDAQQCKELGAAAHKADERNRAIQFYERALYHVDFDEGTWAFELLDNHRDAVNEVRLPVYLNLAAC 90          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A485LNU0_9STRA (Aste57867_23136 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNU0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.390e-14
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   43 DSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            + ++TKE+S +FE R+E A++ ++LG +  K      A   YER+LYH+DFDE    F+F D+HR+ +   +LPV LNL  C
Sbjct:    8 EELMTKERSCIFETRVEDAKQCKELGADAHKASERNRALQFYERALYHVDFDEGTWAFEFLDQHRDAVNQVRLPVYLNLAAC 89          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A6G0X1Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1Z2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.900e-14
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   43 DSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNL 279
            + +LTKE+SY+FE R+E A++ ++LG    K      A   YER+LYH+DFDE    F+  D+HR+ +   +LPV LNL
Sbjct:    9 EEVLTKERSYVFETRVEDAQRCKELGAAAHKANERNGAVQCYERALYHVDFDEGTWAFELLDQHRDAVNEVRLPVYLNL 87          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A1V9ZUF3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUF3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.510e-13
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   46 SILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            ++LT+E+S +FE R+ETA   ++ G    K G    A   YER+LYH+DFDE    F+  D+HR+ +   +LPV LNL  C
Sbjct:    5 TLLTRERSCIFETRVETAAACKEAGATAQKAGDRATAVECYERALYHVDFDEGTWAFELLDQHRDAVNAVRLPVYLNLAAC 85          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A1V9Z0S9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0S9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.770e-12
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   49 ILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            +LTKE+S +FE R+E A + ++LG E  K      A   Y+R+LYH++FDE   +F+  DKHR+ +   +LPV LNL  C
Sbjct:    8 VLTKERSCVFEGRVEDALQCKKLGAEAQKSREFVKAVEYYDRALYHVEFDEGTWSFELMDKHRDAVNAVRLPVYLNLAAC 87          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: T0RHP6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RHP6_SAPDV)

HSP 1 Score: 69.7 bits (169), Expect = 4.340e-12
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 MTDVVTERAQDANKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQC 288
            MT+  T  A       +LT+E+S +FE R+E A + ++ G    K G    A   YER+L+H++FDE    F+  DKHR+ +  A+LPV LNL  C
Sbjct:    1 MTETTTTTAPTDPVTELLTRERSCIFETRVEMAAECKEAGATSQKAGDYAAAVRCYERALFHVEFDEGTWAFELLDKHRDAVNVARLPVHLNLAAC 96          
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Match: A0A397EGL4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EGL4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.530e-12
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   37 NKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMKDAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQCLAKS 300
            +++ ++TKE+SY+FE R+E A++ ++LG    K      A   YER+LYH+DFDE    F+  D HR+ +   +LP +L  C  +  S
Sbjct:    7 SQEELMTKERSYIFEARVEDAQQCKELGAAAHKADERNRAIQFYERALYHVDFDEGTWAFELLDNHRDAVNEVRLPGILTPCHEITLS 94          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig668.15411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LGG3_ECTSI1.510e-4674.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9H3_9PHAE3.230e-4665.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U9S3_9STRA1.740e-1442.68Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GXF3_9STRA7.890e-1441.67Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A485LNU0_9STRA8.390e-1442.68Aste57867_23136 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X1Z2_9STRA8.900e-1444.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZUF3_9STRA3.510e-1343.21Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9Z0S9_9STRA1.770e-1243.75Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0RHP6_SAPDV4.340e-1239.58Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A397EGL4_9STRA6.530e-1237.50Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig668contigL-elsbetiae_contig668:21265..22625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D8LGG3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8M8@1,2SF31@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionElongated TPR repeat-containing domain
Ec32 orthologEc-16_003940.1
Exons3
Model size348
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig668.15411.1prot_L-elsbetiae_contig668.15411.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig668 21265..22625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.2117665-CDS-L-elsbetiae_contig668:21264..213241622816739.2117665-CDS-L-elsbetiae_contig668:21264..21324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 21265..21324 +
1691683777.4895957-CDS-L-elsbetiae_contig668:21264..213241691683777.4895957-CDS-L-elsbetiae_contig668:21264..21324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 21265..21324 +
1622816739.2274177-CDS-L-elsbetiae_contig668:21828..219431622816739.2274177-CDS-L-elsbetiae_contig668:21828..21943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 21829..21943 +
1691683777.5039053-CDS-L-elsbetiae_contig668:21828..219431691683777.5039053-CDS-L-elsbetiae_contig668:21828..21943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 21829..21943 +
1622816739.2399077-CDS-L-elsbetiae_contig668:22452..226251622816739.2399077-CDS-L-elsbetiae_contig668:22452..22625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 22453..22625 +
1691683777.5153875-CDS-L-elsbetiae_contig668:22452..226251691683777.5153875-CDS-L-elsbetiae_contig668:22452..22625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 22453..22625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig668.15411.1

>prot_L-elsbetiae_contig668.15411.1 ID=prot_L-elsbetiae_contig668.15411.1|Name=mRNA_L-elsbetiae_contig668.15411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MTDVVTERAQDANKDSILTKEKSYLFEERIETAEKLRQLGNERFKRGHMK
DAAVAYERSLYHIDFDELQINFDFNDKHRETLTGAKLPVLLNLCQCLAKS
GGGRGENAGRAAEHAG
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mRNA from alignment at L-elsbetiae_contig668:21265..22625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig668.15411.1 ID=mRNA_L-elsbetiae_contig668.15411.1|Name=mRNA_L-elsbetiae_contig668.15411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1361bp|location=Sequence derived from alignment at L-elsbetiae_contig668:21265..22625+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGACGTAGTAACAGAAAGGGCCCAGGACGCTAACAAGGACAGCAT CTTGACGAAGGTGAGACACAGCAGTCCCAAACTATTTGTTTACCCGCGAG TGCATTCCTTGAATGCGGGAGTGTCCGACACGCTCGGTGTCTCCACATCC GCTCCACATTGACACAATGTTGTCGTTTCGACCTCTACTCGCTAGAGATG AAGCTTCAACTTGCACGAACTTCAGCACGTTAGCCCGCGTCAGGGTATGC GTTTGAGATGTTTCAGCCCTCATGATAACATATCAAACATGTCATTAGAG TGTGCGCGACCGCACTCTTAGGCCCCGATCTCCGTATTCTACCCCGGGTT GTTCGCATTTGGCATGTGTGCTGCGTGTGTTTCAGCTCTTCCCTCTAGCC TGATTTACGTATGCACGTTTTCAACCCACGAATGAAGCGTCTCGAACTAG TTGTTGTCGATCGGCCCGCAGAATATTTTCATGTTCCCACTCATCGTGGA CGTTCATCCAACACCCAACACCCCCGTGGCACTCTGGTCCTCTCTGGCGT ACCATTACTCTCAGGAAAAGTCGTATCTCTTCGAGGAGAGAATAGAGACC GCAGAGAAGCTGCGTCAGCTTGGGAATGAGCGGTTCAAGAGAGGCCACAT GAAAGACGCGGCGGTCGCCTACGAGAGGTGTGAATCCTTTGGTAGGCGTG TGGCGGGACACAACACTTGGTTGCTCTCTCTCCCCGAAGTACGCAGAACG TCGTCGGGTTCGTTTGTTGTACGCACGCCCCACTGTTGGTGTTCATGTGC CCCTGCCTTCCTTCCCGTGTGTCTCTCGAAAGGGGTGCCTGGCTGATCAA CGGAGGAGCGAATCAAACACATTGTTTGGATGCCGGTTGCAGGATCAAAG GAAGATTAAGATTGATAAAAAAAGGTTTGAGACTCAAAGAAGACCTTGAT TATTGTCGAGCGTAAAGAACCAGAAAAGTCTTCCGGAGGAGGGTCTGCGT GCCCACACATACCCCCATCATGACACATGCGACGCCCAAAGCACCCACAT GGCCTCCAAGGACCCCACCGATAGTATATGGTGCCTCGTATTATGCCTAT ACCTACATTGTCACCAATGTGTATCCCCCCCTTTCCGGCCACTCTTCTGT GTTGCATCGATCTTCCCGCCGCTACGACGAGAAAAGAGCTCTCTACCACA TCGATTTCGACGAGCTCCAGATAAACTTCGACTTCAACGACAAGCACAGG GAGACCCTCACTGGGGCAAAGCTGCCGGTGCTGCTCAACCTGTGCCAGTG CCTGGCCAAGTCGGGCGGAGGGCGGGGCGAGAACGCGGGACGCGCGGCGG AGCATGCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig668:21265..22625+

>mRNA_L-elsbetiae_contig668.15411.1 ID=mRNA_L-elsbetiae_contig668.15411.1|Name=mRNA_L-elsbetiae_contig668.15411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig668:21265..22625+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGACGTAGTAACAGAAAGGGCCCAGGACGCTAACAAGGACAGCAT
CTTGACGAAGATGACCGACGTAGTAACAGAAAGGGCCCAGGACGCTAACA
AGGACAGCATCTTGACGAAGGAAAAGTCGTATCTCTTCGAGGAGAGAATA
GAGACCGCAGAGAAGCTGCGTCAGCTTGGGAATGAGCGGTTCAAGAGAGG
CCACATGAAAGACGCGGCGGTCGCCTACGAGAGGTGAAAAGTCGTATCTC
TTCGAGGAGAGAATAGAGACCGCAGAGAAGCTGCGTCAGCTTGGGAATGA
GCGGTTCAAGAGAGGCCACATGAAAGACGCGGCGGTCGCCTACGAGAGGT
CTCTCTACCACATCGATTTCGACGAGCTCCAGATAAACTTCGACTTCAAC
GACAAGCACAGGGAGACCCTCACTGGGGCAAAGCTGCCGGTGCTGCTCAA
CCTGTGCCAGTGCCTGGCCAAGTCGGGCGGAGGGCGGGGCGAGAACGCGG
GACGCGCGGCGGAGCATGCTGGGCTCTCTACCACATCGATTTCGACGAGC
TCCAGATAAACTTCGACTTCAACGACAAGCACAGGGAGACCCTCACTGGG
GCAAAGCTGCCGGTGCTGCTCAACCTGTGCCAGTGCCTGGCCAAGTCGGG
CGGAGGGCGGGGCGAGAACGCGGGACGCGCGGCGGAGCATGCTGGG
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