mRNA_L-elsbetiae_contig668.15409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig668.15409.1
Unique NamemRNA_L-elsbetiae_contig668.15409.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig668.15409.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.660e-73
Identity = 137/177 (77.40%), Postives = 148/177 (83.62%), Query Frame = 3 
Query:  171 MARIEAEIELEQLQREEDGSAMTARDQVRTVTAGWLVGVVLXXXXXXXXXCLFSPALGFMLVLPIVSGGVIGGLVYSQLRDKMRSLRREPMPGEQXXXXXXXXXXXXXRNGNSEDKEEFLRQLQGRSDPSATYLHIGADNTALPSGSFLRRVALGATHVLVRSALDVTVAAAYAVLG 701
            M RI+AEIELEQLQREE GSAMTAR+QVRTVTAGWLVGV+L  XXXXXXXCLFSPALGFM+VLP VSGGVIGGLVYSQLRDK+RSL R PMP EQ                 SEDK+EFLRQLQGRSDPSATYLH+G D++ LPSGSFLRRVALGATH+LVRSALDVT AAA A+LG
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRG-------RSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLG 170
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig668.15409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG6_ECTSI1.660e-7377.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig668contigL-elsbetiae_contig668:10721..15101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003970.1
Exons6
Model size1574
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig668.15409.1prot_L-elsbetiae_contig668.15409.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig668 10762..14282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.958987-UTR-L-elsbetiae_contig668:10720..107611622816738.958987-UTR-L-elsbetiae_contig668:10720..10761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig668 10721..10761 +
1691683777.3001223-UTR-L-elsbetiae_contig668:10720..107611691683777.3001223-UTR-L-elsbetiae_contig668:10720..10761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig668 10721..10761 +
1622816739.0510764-UTR-L-elsbetiae_contig668:14282..151011622816739.0510764-UTR-L-elsbetiae_contig668:14282..15101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig668 14283..15101 +
1691683777.3755348-UTR-L-elsbetiae_contig668:14282..151011691683777.3755348-UTR-L-elsbetiae_contig668:14282..15101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig668 14283..15101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.97367-CDS-L-elsbetiae_contig668:10761..108421622816738.97367-CDS-L-elsbetiae_contig668:10761..10842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 10762..10842 +
1691683777.3120222-CDS-L-elsbetiae_contig668:10761..108421691683777.3120222-CDS-L-elsbetiae_contig668:10761..10842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 10762..10842 +
1622816738.9902902-CDS-L-elsbetiae_contig668:11575..116381622816738.9902902-CDS-L-elsbetiae_contig668:11575..11638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 11576..11638 +
1691683777.3210177-CDS-L-elsbetiae_contig668:11575..116381691683777.3210177-CDS-L-elsbetiae_contig668:11575..11638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 11576..11638 +
1622816739.0018291-CDS-L-elsbetiae_contig668:11941..121091622816739.0018291-CDS-L-elsbetiae_contig668:11941..12109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 11942..12109 +
1691683777.3299408-CDS-L-elsbetiae_contig668:11941..121091691683777.3299408-CDS-L-elsbetiae_contig668:11941..12109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 11942..12109 +
1622816739.0143685-CDS-L-elsbetiae_contig668:12700..127871622816739.0143685-CDS-L-elsbetiae_contig668:12700..12787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 12701..12787 +
1691683777.3422992-CDS-L-elsbetiae_contig668:12700..127871691683777.3422992-CDS-L-elsbetiae_contig668:12700..12787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 12701..12787 +
1622816739.0280385-CDS-L-elsbetiae_contig668:13299..134721622816739.0280385-CDS-L-elsbetiae_contig668:13299..13472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 13300..13472 +
1691683777.3515904-CDS-L-elsbetiae_contig668:13299..134721691683777.3515904-CDS-L-elsbetiae_contig668:13299..13472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 13300..13472 +
1622816739.0400167-CDS-L-elsbetiae_contig668:14140..142821622816739.0400167-CDS-L-elsbetiae_contig668:14140..14282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 14141..14282 +
1691683777.3619325-CDS-L-elsbetiae_contig668:14140..142821691683777.3619325-CDS-L-elsbetiae_contig668:14140..14282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig668 14141..14282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig668.15409.1

>prot_L-elsbetiae_contig668.15409.1 ID=prot_L-elsbetiae_contig668.15409.1|Name=mRNA_L-elsbetiae_contig668.15409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MGASIEEEELTAQRDAAVSVCKGLQDKIRAQAAEYEARTEAAEMARIEAE
IELEQLQREEDGSAMTARDQVRTVTAGWLVGVVLGWAAGLVLGCLFSPAL
GFMLVLPIVSGGVIGGLVYSQLRDKMRSLRREPMPGEQQQQQQQQQQQPG
GRNGNSEDKEEFLRQLQGRSDPSATYLHIGADNTALPSGSFLRRVALGAT
HVLVRSALDVTVAAAYAVLGLGGAGGAGTGEGRGQTR*
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mRNA from alignment at L-elsbetiae_contig668:10721..15101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig668.15409.1 ID=mRNA_L-elsbetiae_contig668.15409.1|Name=mRNA_L-elsbetiae_contig668.15409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4381bp|location=Sequence derived from alignment at L-elsbetiae_contig668:10721..15101+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGGAGGCCCAAGAGGCAACAAAGGAGCGGTCGCAACGTGATGGGTGCG
TCGATTGAAGAGGAAGAGCTCACCGCTCAGCGTGATGCTGCTGTATCTGT
ATGTAAAGGCCTTCAGGACAAGGTGAGAAGTAGTGAGAAGGTTTCAAAAA
GTTGCGGCGGGAATATCACGCCGCAAACTGCAACATGACCGCCAACGTGC
CAACCTACACGATGCCTTTGCTGAAGTGCTACTGTGCTATTGCAGACTTG
CAGCTGGGAATCTCTTTATTTTGATGTGTAGAATTTATGGGCCGCAACAC
AAACTCGGTCCACGAAAAGGGCCCTACAGGACACTGCCATCTACTCTAGA
TGTTCTACGCAGTATTTACCGAAGGTGACACAAGAACCACACCCCGGACC
GACTTTTAGAGCTCGATTACTCCATAACGAAGAGGGTGCCAGCGCCAAAC
GACACATTTTCGGGCAGCCCTCGACTAGGTATTTCCAACGCTATGCCCTC
CCGGCACTGGTACTCTTCCTGCTTCGGGGAGGATCGAGCTTTGAAAATCT
GTCCAGGGGGTGTGGTATCTTGTGTCACCTACGTAGTCTAGGTAGTCTTG
TACCTACATTGGTCTCGTATAGCATGGGACATGCATATGAACTGGTACTC
GGTACGCCGGTACATGGTGGGCAATGGTCCACGCTATCGCCCCTTTCATT
TTGTATCAGCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCGCTGTCCTTCCACCTTTTATTTCCTCCTTTTCCCCACGCCCTCTT
CCTCATCTCTCGCCCCCTCACCTCAACGCCCCGTCCGCTCAACCCTCCCG
TCCAGATTCGAGCTCAGGCCGCAGAGTACGAGGCTCGAACTGAAGCGGCG
GAAATGGCTCGGATAGAGGTACGACAACACAGCACCCTGAGAGAAAAGGC
TACCCCGCCGAGAGCTAGGCAACCTATGTACATATGTAGCTGCTCATCTG
TCCATACCAGCCCCTTTCGAGTCTGGATGTACATACATGTGTACTTCATG
GTTGCACTTAGCAGCAGACTCGCGCAAAACCAGTGAATACCTGGAATTAT
CTTCGGACACCGGCTACATATGGTAAGTACATATGTTGAGTTCATCACGG
GGGTATTCCACCCCCGCTGGGCGAGCACCACCCAACACCACGCGCGCAAC
GCACGCACCACACGCCTTCAGGCCGAAATCGAGCTAGAACAGCTGCAACG
AGAAGAGGACGGAAGTGCGATGACCGCGAGGGACCAGGTCCGCACGGTGA
CGGCCGGGTGGCTGGTGGGGGTGGTTCTCGGCTGGGCCGCCGGTTTGGTT
CTTGGTTGCCTCTTCTCGCCGGCGCTCGGCTTCATGCTGGTGGGTCTCAC
CGGAGATTTCCTGCCGTACAAAGGTAGCTTTTTCGTTGTCACCGGCTAGC
GGAAGCCCCCCCCCCATCAACTTCCCCCTGCTCGGAAGGGAAGCTGAGAA
ATGCTTTTCGCCGCGAGCGATATATACAGCAGCCTGTGTGACCATCACAT
GTCGGCACAATCAAAAAGTTGGCCCCATGATGTGTGGTGTGCCGTGCGTT
CTTTGAAAGCGCGGTAATTCTCCGGGAGGCCGAGTAGAATCCCACCCGCG
TAGGTTGCGCAAAACTGCTCGCCCACCTTTTAGTATAAGGCGTGTGGCGG
AGAGAGATTAGACTTCGATCGACGCAGATTTTAGTATGTTTGAATGCGCC
CGGTCGCGGCCGGCGGTGTTGCAACAGAGGCTTGATTGGTGGTACCGTGG
CACTGGGTGGTGAGCGCGCTCATAAGTTTTTCATAACGCAGCTTCTACAT
ACTTCGTATGTGCTCTCTGGCAAACGATTGTTTCAGGTTTGACCAGCGTA
CTGTACTACTGCCCACGCTTTTGAAGGATACTGAGATCTCAGCAATAATT
GTGCTCATCTCAAATCTCGTCGCACGCCAGGTGCTCCCGATTGTATCTGG
CGGGGTGATTGGCGGTTTGGTCTACTCGCAGCTTAGGGACAAGATGCGAT
CGCTTCGACGAGAGCCGGTGAGAAAGCTGGTACATAGCTCGAGTACCGGA
CCCTAGTGTTGTTTAAAAAATACACAATGAATCAAAGATGGAACCTACCC
CACACTAGAGCAAGGAATCAATATGGGGTTCAAACGGTATTCCATACAGT
GACGTAATATTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTTCCGCTGG
TGGAAGATGCGCGGCGGCACTCACAAAAACGCCGGGCCCTTTCAATGTTC
GGAAAACGTCACCTTGCTGCGTCTCGTCTCTACCGCTCCTGCGCCCCACC
ACTGGTTCCTGTTCGTTGACCTGCTTCTGACGCCTCTAGTGCTGCTTGAT
ATCTACTTACGGCGCCATTACCTCTGCTTCGGTTTCAACTTTCGGTTGTT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCGCCAATCTGTTCGATCCCC
GCCCAACGCCCGCACCCCGGTTTTCGGATCCTGCCCGGCGTTCGTTTGTC
CTCGTCCGCCCCCGGTTCCTGGCGAAAAGATGCCGGGGGAGCAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCCGGGAGGAAGGAATGGAAACTCCGA
AGACAAGGAGGAGTTCCTGCGGCAGCTGCAGGGCCGGTCCGATCCGTCCG
CCACCTACCTGCACATCGGGGCGGACAACACCGCCCTCCCGTCCGGATCT
TTGTAAGTCCTCTTTGGTGTCTGTCTTTGGGGGGTGGTTGTGAGTACGTT
GCTACGCAGACGCCGCTCTGCACAGTTTTTTTTTTGCGACGCCTACTTGA
ATTGTACTAACTGTGTGTTGGAGAAAATAACAAATAACAAATCCTATAAA
GATAACGTGGGCGTCCTGCTCCTCAGCTCTCCAGAGCTCAGGTGGTTTAT
GTATGTACTTCGAAGTATGTATGTATGTATGTATGCACGTTTCGTAAGTG
ACGTGCCATAATGTAACTGCTGTGCAGAGTGCAAGAGTGGTCTCCTTCTG
TTTTCGTGATGAATGCTTCGAGCTTGCTCTACAGTATTCACCCCCATTTT
CCATAAAGTGCGGGGATCTATTCAGTGGGCTGTCCCTTCGTGATAGCTCC
ACCACTTGGCCTTGCTCGCTCACCCCGCTGCCGTTTCTTTTATTTGGCCT
TGCGGATTCACCCTCCTTCGTCTCTCGGGCTATTGTGAGGGCAACTAGAA
CGGCCGATCCAACTCTCCTTCTTGACGCCCCATTTCTCCACCCCTTCTGT
TCACACCCGCCGCCCTTTCGCCGCACCTCTCCCCTTTGAACGGTTGCTGT
GTTTGTGGGTGTGTGCGTGTGTGTGTTTTTTATTGTTTTTTTGTGAATCC
CGCCTTCTTTGCGTGACCAGCCTGCGGAGAGTTGCGCTGGGCGCGACTCA
CGTGCTTGTCAGGTCTGCGCTAGACGTGACCGTAGCTGCGGCCTACGCCG
TCCTTGGTCTTGGCGGCGCCGGCGGTGCCGGAACGGGGGAAGGCCGGGGG
CAAACCCGATGACAGAAACAGGAGAACGAGGGTGCCACACGTTTCCGCGA
GGTCTGATTCTGGGAGATGCTGCTTGCTGCCTGGCAAATCTGATTGGTTG
TGTATTACGTCCATGGGGCACAGGCGCACGTATGGACCGCTGACGGCCAG
CGTGTACCTGGATCATGTAGGGATCGCTGACGACCAGCTTTTTTTTGTAC
CCTTAATACGCAGAATTCTGACTTACCATCGTGAGCGCGTAGATTTGAAT
TGACTGTGTAACTACTGATTTCACGGGTTTCGCGGCTTTCGCTTCTGTGT
ATGGATATCCTGTCCCAGGGTGTCAAGATGTATACATACAAGATCTGAGA
TTTCTATTATTTCAGATGTGGTTGAACAGATCTTTTTTGTTCGCAACCTT
GTTGGAGTTGGGACGAATATCCACTCGCGAAATGAATCTCGCAGGATTTA
CTACTGAAACTAGATTTCTGGCGTATCGCATGTCGGTATATAAGTTGACG
CGATTCGGCCTTCTTGCGGCTGCGAAAATTGCAGGTTTTCGTGCAAGGGC
GAACGTGTGGAAAGTCCTTGCTTGGCCTCTCTGTCGGCCGGTGTCGTTAG
CTACAGCTAGATACATACGTATTACTTCTGTAGCCTTTTTGTAGCACATG
CGTGGTGTGCGCTGACGGTGCTTGTACATACGGCGGTGCTTGAATATCTT
CGTTATTGTGTTTTTGAGTATCGACTCCTCGGCTGCGTGACCTGTGGATA
ACCACCCCTTAATTAAGGGGTAGTCGCTCCCTCGTGTTGATCCGTGCCCG
CTGGCGAGCTCTCGAGATCGGGGGCACCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig668:10721..15101+

>mRNA_L-elsbetiae_contig668.15409.1 ID=mRNA_L-elsbetiae_contig668.15409.1|Name=mRNA_L-elsbetiae_contig668.15409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig668:10721..15101+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGCGTCGATTGAAGAGGAAGAGCTCACCGCTCAGCGTGATGCTGC
TGTATCTGTATGTAAAGGCCTTCAGGACAAGATGGGTGCGTCGATTGAAG
AGGAAGAGCTCACCGCTCAGCGTGATGCTGCTGTATCTGTATGTAAAGGC
CTTCAGGACAAGATTCGAGCTCAGGCCGCAGAGTACGAGGCTCGAACTGA
AGCGGCGGAAATGGCTCGGATAGAGATTCGAGCTCAGGCCGCAGAGTACG
AGGCTCGAACTGAAGCGGCGGAAATGGCTCGGATAGAGGCCGAAATCGAG
CTAGAACAGCTGCAACGAGAAGAGGACGGAAGTGCGATGACCGCGAGGGA
CCAGGTCCGCACGGTGACGGCCGGGTGGCTGGTGGGGGTGGTTCTCGGCT
GGGCCGCCGGTTTGGTTCTTGGTTGCCTCTTCTCGCCGGCGCTCGGCTTC
ATGCTGGCCGAAATCGAGCTAGAACAGCTGCAACGAGAAGAGGACGGAAG
TGCGATGACCGCGAGGGACCAGGTCCGCACGGTGACGGCCGGGTGGCTGG
TGGGGGTGGTTCTCGGCTGGGCCGCCGGTTTGGTTCTTGGTTGCCTCTTC
TCGCCGGCGCTCGGCTTCATGCTGGTGCTCCCGATTGTATCTGGCGGGGT
GATTGGCGGTTTGGTCTACTCGCAGCTTAGGGACAAGATGCGATCGCTTC
GACGAGAGCCGGTGCTCCCGATTGTATCTGGCGGGGTGATTGGCGGTTTG
GTCTACTCGCAGCTTAGGGACAAGATGCGATCGCTTCGACGAGAGCCGAT
GCCGGGGGAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGAG
GAAGGAATGGAAACTCCGAAGACAAGGAGGAGTTCCTGCGGCAGCTGCAG
GGCCGGTCCGATCCGTCCGCCACCTACCTGCACATCGGGGCGGACAACAC
CGCCCTCCCGTCCGGATCTTTATGCCGGGGGAGCAGCAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCCGGGAGGAAGGAATGGAAACTCCGAAGACAAGG
AGGAGTTCCTGCGGCAGCTGCAGGGCCGGTCCGATCCGTCCGCCACCTAC
CTGCACATCGGGGCGGACAACACCGCCCTCCCGTCCGGATCTTTCCTGCG
GAGAGTTGCGCTGGGCGCGACTCACGTGCTTGTCAGGTCTGCGCTAGACG
TGACCGTAGCTGCGGCCTACGCCGTCCTTGGTCTTGGCGGCGCCGGCGGT
GCCGGAACGGGGGAAGGCCGGGGGCAAACCCGATGACCTGCGGAGAGTTG
CGCTGGGCGCGACTCACGTGCTTGTCAGGTCTGCGCTAGACGTGACCGTA
GCTGCGGCCTACGCCGTCCTTGGTCTTGGCGGCGCCGGCGGTGCCGGAAC
GGGGGAAGGCCGGGGGCAAACCCGATGA
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