mRNA_L-elsbetiae_contig6674.15405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6674.15405.1
Unique NamemRNA_L-elsbetiae_contig6674.15405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 9.170e-105
Identity = 173/190 (91.05%), Postives = 182/190 (95.79%), Query Frame = 2 
Query:    2 AAEEFDEKAVMASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            AA+EFD  AV+ASA+ERMDKS+ESVRLNLETLRTGRANPKILDRVVV+CYGAETPLNQVASVKTTSATALLVESYDPTILADIA+AIQEADLG TPNNDG+VIRLNMPPVTEDRRKELAKEAK LGEEGKVAIRNIRREAVD VKKAEKAKNLGKDQSKD QDAIQKLTD TTKTIDEKV+ KEK+ILKV
Sbjct:   62 AADEFDGDAVLASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKSLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDVQDAIQKLTDKTTKTIDEKVAAKEKDILKV 251
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: B7GAC1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAC1_PHATC)

HSP 1 Score: 204 bits (519), Expect = 4.910e-60
Identity = 106/183 (57.92%), Postives = 140/183 (76.50%), Query Frame = 2 
Query:   23 KAVMASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            K V   A +RM KS++SVRLNL+++RTGRA+ +ILDRV VD YG ETPLNQ+A++   SA  L ++ YD T L +I +AI E+DLG T NNDGS+IR+N+P +TEDRRKE+ K  K +GEEGKVA+RNIRR+ +D +KK EK+ ++G+D+ KD QD +QKLTD   K IDE V  KEKE++KV
Sbjct:   43 KDVTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S1ZTM1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTM1_TRICV)

HSP 1 Score: 204 bits (518), Expect = 2.950e-59
Identity = 107/180 (59.44%), Postives = 137/180 (76.11%), Query Frame = 2 
Query:   32 MASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            M  A++RM K+I SV+ NL+T+RTGRAN  ILDRV VD YGA TPLNQ+A +   S+  L V+ YD + LAD+  AI E+ LG TPNNDG+ IR+N+P +TEDRRKEL K+ K +GEEGKVA+RN+RR+ VDA+KK EKA ++GKD+S D  D IQKLTD + K IDE V+ KEKE++ V
Sbjct:   93 MMDAEDRMSKTISSVKSNLQTIRTGRANAAILDRVEVDYYGAMTPLNQMAGISVPSSQQLQVDPYDKSTLADVEKAIIESGLGLTPNNDGNTIRINIPQLTEDRRKELLKQCKAMGEEGKVAVRNVRRDNVDAIKKLEKASSIGKDESLDGLDEIQKLTDTSVKEIDEIVAKKEKEVMTV 272
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S1C109_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C109_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.460e-59
Identity = 108/177 (61.02%), Postives = 136/177 (76.84%), Query Frame = 2 
Query:   41 AKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            AK RM KS + ++ NL+T+RTGRAN  ILDRV VD YG  TPLN +AS+   S++ LLV+ YD T L DI  AI EA LG  PNNDGS IRLN+P +TE+RRKEL K+ K +GEEGKV +RNIRR AV+++KK EKA ++ KDQS DAQ+++QKLTD+T K I+E VS KEKE++KV
Sbjct:   90 AKVRMKKSTDVLQQNLQTIRTGRANAAILDRVTVDYYGEPTPLNSLASISVPSSSQLLVDPYDKTSLGDIERAIVEASLGLNPNNDGSAIRLNIPALTEERRKELMKQVKAMGEEGKVGVRNIRRGAVESIKKLEKASDISKDQSMDAQESVQKLTDSTIKNIEEVVSKKEKEVMKV 266
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.660e-59
Identity = 109/189 (57.67%), Postives = 142/189 (75.13%), Query Frame = 2 
Query:    5 AEEFDEKAVMASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            AEE DE A+    +ERM KS +SV  NL+T+ TGRANP +LDR+  D YGA TP+NQ+AS+   SA+ L ++ YD + L+DI  AI  +DLG TP NDGSVIR+N+P +TE+RRKEL K+ KG+GEEGKVA+RN+RR+ VD +KK EKA  +G+DQSK+ QD IQK+TD   K IDE V+ KEK++ KV
Sbjct:   43 AEEVDEIAL--EIEERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S1TJD3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 199 bits (505), Expect = 4.360e-58
Identity = 103/183 (56.28%), Postives = 139/183 (75.96%), Query Frame = 2 
Query:   23 KAVMASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            K +   ++ERM KSIE+V  +  T+RTGRANP ILDRV+V  YGAETPL Q+ASV T S+T + ++++D + + DI  AI E+DLG TP+NDG+VIRLN+P +T+DRRKE+ K+ K L EEG+VA+RNIRR+ VD +K  EK+ ++GKD+SK AQD IQKLTD   KT+D  +  KE E++KV
Sbjct:   33 KDIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A836CN93_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN93_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.260e-57
Identity = 105/173 (60.69%), Postives = 131/173 (75.72%), Query Frame = 2 
Query:   53 MDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            M KS++  R NL TLRTGRA+P ILDRV VD YG  TPL  +A+VKT+SAT L+VE YD + L+ I   I E+ +G  PNNDG VIRLN+P VTEDRRKEL KEA+ LGEEGKVA+RNIRR+ V+ +KKAEK+K + +DQSK+    IQK+TD   K +DE V+TKEK+I+ V
Sbjct:    1 MQKSVDKCRENLATLRTGRASPGILDRVFVDYYGTPTPLKGLAAVKTSSATQLMVEPYDRSSLSAIERGILESGVGLNPNNDGQVIRLNIPAVTEDRRKELCKEARALGEEGKVAVRNIRRDVVEVIKKAEKSKEISQDQSKNTSGDIQKITDKYAKMVDEAVATKEKDIMTV 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.580e-57
Identity = 102/177 (57.63%), Postives = 135/177 (76.27%), Query Frame = 2 
Query:   41 AKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            A +RM+KSIESV  N+ T+RTGRA+P ILDRV  D YG ETP+NQ+AS+   SA  L VE +D ++L D+  AI E+D+G TP NDG+VIRLN+P +TEDRRKE+ K+ K +GEEGKVA+RNIRR+AVD++KK EK  ++ +D+SK +QD IQK+TD   K ID  V  KE +++KV
Sbjct:   52 AMDRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.740e-57
Identity = 106/183 (57.92%), Postives = 138/183 (75.41%), Query Frame = 2 
Query:   29 VMASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLG--KDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            V + A+ +M KS+ESV+ NL TLRTGRANP +LDRV VD YG  TPLNQVAS+  +S T+L+V+ YD + L D+  AI E+D+G  P+NDG  IRLN+P +TE+RRKEL K AK LGE+GKVA+RN+RR+AVD++KK  K K+ G  +D  KD+ D+IQKLTD   K +DE V+ KEK+I KV
Sbjct:   58 VESEAEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240
[Close]
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Match: A0A1E7F508_9STRA (Ribosome releasing factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F508_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.370e-57
Identity = 101/179 (56.42%), Postives = 137/179 (76.54%), Query Frame = 2 
Query:   35 ASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVASVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKDAQDAIQKLTDATTKTIDEKVSTKEKEILKV 571
            A A ++M KSI+S+ LN+ ++RTGRA+P ILDRV    YG ETP++Q+A++   SA  L+V+ +D T L DI  AI +AD+G TP NDGSVIRLN+P +TEDRRKE+ K+ K +GEEGKVAIRNIRR+AV+ +KK EK+ ++G+D+SK AQD IQK+TD   K +D+ V  KEKE++ V
Sbjct:   46 ADATDKMKKSIDSLYLNMNSVRTGRASPAILDRVRAQYYGTETPISQMATISVPSAQQLMVDPFDKTALGDIERAIVDADIGLTPQNDGSVIRLNIPALTEDRRKEMMKQCKAIGEEGKVAIRNIRRKAVETIKKLEKSSDIGEDESKMAQDKIQKMTDKNVKEVDDIVDRKEKEVMTV 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6674.15405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE9.170e-10591.05RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
B7GAC1_PHATC4.910e-6057.92Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZTM1_TRICV2.950e-5959.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1C109_9STRA3.460e-5961.02Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2JZ54_9STRA8.660e-5957.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1TJD3_9RHOD4.360e-5856.28Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A836CN93_9STRA1.260e-5760.69Ribosome recycling factor domain-containing protei... [more]
A0A7S4EEJ6_9STRA2.580e-5757.63Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2S100_9STRA3.740e-5757.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7F508_9STRA6.370e-5756.42Ribosome releasing factor n=1 Tax=Fragilariopsis c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6674contigL-elsbetiae_contig6674:1338..6544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue4.8e-83
Seed eggNOG ortholog2880.D7G2D8
Preferred nameRRF1
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
EC2.7.1.25,2.7.7.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Ec32 ortholog descriptionribosome recycling factor
Ec32 orthologEc-00_005780.1
Exons6
Model size1303
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6674.15405.1prot_L-elsbetiae_contig6674.15405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6674 1369..5815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.5888638-UTR-L-elsbetiae_contig6674:1337..13681622816738.5888638-UTR-L-elsbetiae_contig6674:1337..1368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6674 1338..1368 +
1691683777.0404887-UTR-L-elsbetiae_contig6674:1337..13681691683777.0404887-UTR-L-elsbetiae_contig6674:1337..1368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6674 1338..1368 +
1622816738.6692457-UTR-L-elsbetiae_contig6674:5815..65441622816738.6692457-UTR-L-elsbetiae_contig6674:5815..6544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6674 5816..6544 +
1691683777.1135466-UTR-L-elsbetiae_contig6674:5815..65441691683777.1135466-UTR-L-elsbetiae_contig6674:5815..6544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6674 5816..6544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.5997128-CDS-L-elsbetiae_contig6674:1368..14511622816738.5997128-CDS-L-elsbetiae_contig6674:1368..1451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 1369..1451 +
1691683777.0536532-CDS-L-elsbetiae_contig6674:1368..14511691683777.0536532-CDS-L-elsbetiae_contig6674:1368..1451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 1369..1451 +
1622816738.6105552-CDS-L-elsbetiae_contig6674:2725..28091622816738.6105552-CDS-L-elsbetiae_contig6674:2725..2809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 2726..2809 +
1691683777.0632432-CDS-L-elsbetiae_contig6674:2725..28091691683777.0632432-CDS-L-elsbetiae_contig6674:2725..2809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 2726..2809 +
1622816738.621009-CDS-L-elsbetiae_contig6674:3227..33321622816738.621009-CDS-L-elsbetiae_contig6674:3227..3332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 3228..3332 +
1691683777.0727608-CDS-L-elsbetiae_contig6674:3227..33321691683777.0727608-CDS-L-elsbetiae_contig6674:3227..3332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 3228..3332 +
1622816738.6309083-CDS-L-elsbetiae_contig6674:3771..38591622816738.6309083-CDS-L-elsbetiae_contig6674:3771..3859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 3772..3859 +
1691683777.0818524-CDS-L-elsbetiae_contig6674:3771..38591691683777.0818524-CDS-L-elsbetiae_contig6674:3771..3859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 3772..3859 +
1622816738.641459-CDS-L-elsbetiae_contig6674:4675..47561622816738.641459-CDS-L-elsbetiae_contig6674:4675..4756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 4676..4756 +
1691683777.093533-CDS-L-elsbetiae_contig6674:4675..47561691683777.093533-CDS-L-elsbetiae_contig6674:4675..4756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 4676..4756 +
1622816738.6526341-CDS-L-elsbetiae_contig6674:5713..58151622816738.6526341-CDS-L-elsbetiae_contig6674:5713..5815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 5714..5815 +
1691683777.1047666-CDS-L-elsbetiae_contig6674:5713..58151691683777.1047666-CDS-L-elsbetiae_contig6674:5713..5815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6674 5714..5815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6674.15405.1

>prot_L-elsbetiae_contig6674.15405.1 ID=prot_L-elsbetiae_contig6674.15405.1|Name=mRNA_L-elsbetiae_contig6674.15405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MASAKERMDKSIESVRLNLETLRTGRANPKILDRVVVDCYGAETPLNQVA
SVKTTSATALLVESYDPTILADIASAIQEADLGFTPNNDGSVIRLNMPPV
TEDRRKELAKEAKGLGEEGKVAIRNIRREAVDAVKKAEKAKNLGKDQSKD
AQDAIQKLTDATTKTIDEKVSTKEKEILKV*
back to top

mRNA from alignment at L-elsbetiae_contig6674:1338..6544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6674.15405.1 ID=mRNA_L-elsbetiae_contig6674.15405.1|Name=mRNA_L-elsbetiae_contig6674.15405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5207bp|location=Sequence derived from alignment at L-elsbetiae_contig6674:1338..6544+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGCCGAGGAATTCGACGAGAAGGCTGTCATGGCGTCCGCGAAGGAGC
GCATGGACAAGTCGATCGAAAGCGTGCGGCTCAACCTCGAAACCCTCCGA
ACCGGTCGGGCGAAGTGAGTGCAGTGCAGTGCAGTGCAGTGCAACGCATC
GTCTTTACAAAAAAACACCCCCCACAAGAGTCGCTAGGTTGCCTGCCGGG
TAAATAGTAGACTGCTGTTCGGGTGCCGCTTTTTTCACGTGCCCGTGCCG
TCTTCTTCTACGGAACCCCCCCCCCCCCACCAAAAACAAAATGCTATCTG
TCTACCTAGCCTGCCCACACGGAGCGAGTGCGGTAGGTCCCTAGTCCGGG
GACGGCGAGGGCAAGGGGTCACCAGGATTGCAGGGCTGGAAGCACACCCC
CAAACTTCCATATGGCCGGATTCGGGGAGGGGGGGGGTATACTAAAACCT
ATATAAAAGAAAGGGGGGCCTCAGCTGGTATTATTAAGGGGGCGATTTTA
GTCGGGGGTATATGCCCCCGAACGGTCCCCCCTATACCTAAAATCATATA
TGTTTCTCAAACCTCGGTAGGGCCAAAAAAGAGGGAGGAAGGGGGGGGGG
GGGGGTTATGCTTCCAGGATTGTCACCTGGGTGACCCCTTGGCGAGGGAC
GACGGGGGCTACGTAGTGTGCCTGCACCAGACCCCCGGAACGAATTGTTC
TCAGGTTGAATGTAGGCCGCTGACATTTATAGTACAAGAATATTACCATT
CTGTAATAAAAAAAATAGACCAGAGAGAACTTGAGAAAAAAGAGGGGTGT
CTCCGGCCTGACGGACGGTCCTCCTTTTTCGTTCGTGTTTTGTTCTTCCA
GAAAGAAGTGCCGCGCAATCAAAGCGCCCTATTGTAAGGACGACAGTTTT
TTTTTGTGGCAAACCTGAATCTATTTGGGCGCAGAGAGCCGTCTGTCCTC
GTGCTTGTTTTATTTTTTACCATATTAATTGTAGTTTTTTTTTTTTGTAT
CTCCGTGCCTTCGACCAAGACTTCTTGGACGTATGTAGGCGAGTTACCAA
ACACATCCAAGGGGCCCCTACTTAAATACCTACACGGCCTTTGTGAAAAC
TGTCGCTCCGATTCACGTATTTTTCCTGTCTGCTTCGTCTGCCTGTCTGG
CCAACAGATGAGGGAAGACAAGCTGCAATGTTCAATGTTTGAAGCACGGC
CGATTCTCAGCTGCTATGTATGTAGTAATGAGCCTTAACCGTTGGTGGCT
TTCGTGCTGTCCTCACTCTACCCCCACTCTTCTGCGGCTGTGCCGCCGCC
GCCGCCGCCGCTGCCGCTGCTGCTGGTGCCCATTGTCGTCTGTTTATTTT
CGCTGTATTTGTGGTGTCGCAAAAAAAAAAAAAAAAAGCCCCAAGATCCT
CGACCGCGTAGTGGTGGACTGCTACGGGGCGGAGACGCCCCTGAACCAAG
TCGCTTCCGTCAAGACCACCAGGTACACCGTCGAAAATGGGCAAGGTGTG
GGGGGGGGATGCACCGCGGTTATGTTTACCAGTATATACGATAGTCCAGG
AGCGTAGGTACGACATGCACGGGGGGGGTATGTACAAACACAGCCAGGTA
AGACAGGCGTGAGAACGGCCGGAGGAATCGCCCGTTTCAGTTGTTGCTTC
CACCCTGCGTCCTCTCTTCAGGTTTTTATTTGTTTCGGGTGTTGTCGTCG
TTTCGTCGTCGTCCCCTCTTCTCGCGCTTGCTGCCTCGCGCTCTTGTGAT
GCCGCACCACACTATTTACCGCCGTACCCCCGTTACACACGGGGCCCCCT
GCTCCTGCCGTATCCCCCCCCGGCTGGCCTCGCGAACTTGACTCTTCTTC
CTCGCTGCTCCTTTTTTTGCTCTTGTGCTTCGTTTCACAGCGCCACCGCG
CTGTTGGTTGAGTCTTACGACCCGACCATCTTGGCCGACATCGCCTCTGC
TATCCAAGAGGCGGATTTGGGATTCACCCCCAACAATGATGGCAGGTACA
AACAACAGTAGCAAGGGAGGACGGTTCGAAAACTTCGAAATTCCGAAAAT
TGTTCTAGTTGTGTTTCTCAGTCGACCATCATGGACGCGCAAGCCTCGGA
CACACCGTCTTCCACAGCTTTTCTGCATACGAATGCTTGCCTTAAGTGTT
CGAGGAAAGAGTACTGTAACGCCGCCACCGCACGTTTGGTAGCACCACTC
GGGGGTACGTGATGGAATCACGGTGCCTCTCATTTCTGCCTGGTCTCGAG
ATGTACCGTTTTGCTCTTTCGACTTGAGGAGATGAAGTGTAAAGTATAGT
TTCCTCGTCCAAAAGGAGCTCCGTGCATGCGGATTCAATGGCCCAATATC
GATGGCACGCAAGTAACCAAGCCCCCCCCGCCCCCCGCCCCCCCCTATCG
TCACCCACAATACCCCACGTCACCGCCGCGCCAGCGTAATCCGGTTGAAC
ATGCCCCCTGTGACGGAGGACCGCCGAAAGGAGCTTGCCAAGGAGGCCAA
GGGTCTTGGGGAGGAGGGCAAGGTGGGTGAAATATAGTGTGATGTGGTGT
GTGGTGCGATGTTGTTGTTGTTGTTTCTCACATTAGCTCTCTAGTCCAAA
ACATTCTTGGGGGCCCGTGGTCACAAAACAAGGCACACTCGACACCGCGG
AAGAAAAATGAAACAAAAAATATGCTACATAAATACGTGCACGGCGGTAC
TAAACCGGGCCCCGAGGGGTCTTGCGTCTCGCCGACGCAAAAATCAAAGG
TACAGTAGAGTACATCCTACTCGGAAGAGAAAATAAAAGAAAGTTCGAAA
AAGCAAACCAAGATGTGTGTACCTATGCGTCTCTCTGTGCCGTGTTGGGC
GCAGTGTTGCGTGTTTTAATGGGTTTTATGGCACTGCTGTGTAGGGTGGT
GCTTGCTGTCGGTATCTTGGGGTGTCTCTGAGCCTGCTTCTGTCCGTGTC
GTGCTAGATGTATATGTTTGTAGCTGAACTTGCTGACTTCTGCCCCCGAG
GTTGTTGTTTTTTCTTGCACGTGTTGCGCTCTTCCTTTGAGTGCTCCTTG
AAAAAAAGTTACTGCAAAACATGATAAAAATCTTCAAAACCAAGGAGGTC
GGTGGAATACAATACGCGGGGCGGGTTTGGGGTTTTGACACGGTAGTTCT
CCTCTTGAAACAGGCCACCTGGTTTTGACACCGGAAGCACCAAGAGCGCT
CCACAGCTTTGACCGGTAAACGCGTACTGTTTTTTCTGCGCCGCTCGTTG
GTCGTGTCGTCTCTGTCTATTGCCGCCTTAAATACCCCTGAAAACAACAC
CGTCGACCGCCCCCTTGCCTTTTCCGCGTACAAATCAGGTTGCGATCCGC
AACATCAGGAGGGAGGCTGTGGACGCGGTCAAGAAGGCGGAAAAGGCCAA
GAACTTGGGGAAGGACCAGGTAAGGCAGACGCACAGCAAAAATATATAAA
TGACGCGTGTGTGCAGGCAGCGTTGGCCACTCGCTGCAAGGCTCGGGGTC
GGCGTTTTCAAGTTTTTTTCCCCCCAAAGGATGTCGTTTGTCTACCAGTG
TTGTGTTTCTGTTCTCTTTTGTTTTTTTCGACCACCCCCGGGACCGCCCC
GCCGCAAGGGAAGCAGAGGGGCATCTGAATCTGCGACGAAGGTGACTTAA
CTTGGACGGACGATTTTCTTTTCGAGGGCTGTCCTGGGCGGGGCGACATC
AGTTGGCAACTTTCAGGGCTCTGACGACGCGTGCATATGCAGATGGGACT
TTTGAAGCTGGGCACCCGCGCTCGTGCGTTTTGGTCGGGTGTCCCTGATG
TAAAAATATTGTGGCATGTAGGGTGTTTCGTTCCTCCATCCAAAAGGGTT
CCTCCGTCCAAAAGGGTCTTGCACATGTGTAGGGACGTCTGGTGTGGAGA
AGGGGGGAAAACAGCAAGCGTTGAAAATCAACTCTTCAAACAAGCCCGCC
GCCCCCTAGAGCTGTAAAAATGGGTTTATCGGTGATTGCAGAAAAAGCCA
GCGCGACGAAGCCTTTGTCCCAAGGTTAAGGTTGTCCATCTGCTCGTTGC
CCACGCACGTTTTTTCTCTTTTTGGACCGCCTTCGCGAAAAAATGGAGGT
TCATCCAGGAAATAAGAGACAGGGGTTCCGTGACCCCAACTAAGCCTAAC
CATAGCCCCAAACCAACCCCCAGCTTAGCCGTTTCTAAACTTTATCCCAT
ATGTTAGCGTACGTAAAAACCCGCGTAGGCCACTACTGCTGTTCTTTTTC
CACGTCCACCTCAAAAAAAGCTGCCCGCGACCGCTGTTTTGCTTTTTTCC
CCTTTTTGTCCCATCGGCTGGTTGCTTGCTGCGTACGGCCGCCGACGTGT
CGAACGAAACCGACAACAAACCCCAGTCGAAGGACGCACAAGATGCGATC
CAGAAGCTCACCGACGCGACGACCAAGACGATAGACGAGAAGGTCTCCAC
CAAGGAAAAGGAGATCCTTAAAGTATAATAAAATAGACGCCTGCCTCTAG
GCTAAAAGTTAGATTCCACGCCGTGAATTCGACTGTCATTAAGGCCCCGC
GGGCTAGCTCCTCTCTTCCTGCGCAAGTCCAGCCGCATGAAAGAAAAATC
GCAACGGCAATAGCTAAAGTCTCTTGGTCTCTCGCGGTCTTACGTGGTCG
TGCATTCTTGCGGTTTTATCGGCTCTTGAGCTTTAGCTGCGTAGGCTGAG
ACGGTGCCCTCGGGAGTGGCTGAAGAGAGGGAGGTTCGAGGTACGTAGGG
TATGTAGTAGAGGAAATGTTTGTTCGCAAGGGAAGGAATACGTTGTTTAG
TGCGTGGGTCATTCTCTCCAGCAGCTGCGGACCGCATCCTACGGGATGTT
TGAAGGTTGCGCCACCCATACATAAAAGTCTGACCTTCGCACGCGCTGTA
GTTCTGGTATATGCAGACTAAGGAGACTGCGCCCGCTTGCGTGTCCGTCG
GTTTCGGGAACGATTTGGACTTCCCATGTGGTGTGTCATACAGATTGCTG
CTGCTGCTGCTGCTGCTGCTGTGCCCTTTTTTCACTCAACCTAAATGTAT
GAGCCTACGCAGGACACCCCGCTCCTGGCGATCACATCAGAGGTTGACAC
AACCTGATGGAGCCTCGGCGCTTGCAATGCGTGCCTCTGCTCGCCTCTCG
TTTGAGGGATAGGCCACTATTCGGGGCATGACGAGAAATACCGAGCTATC
TTTGGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6674:1338..6544+

>mRNA_L-elsbetiae_contig6674.15405.1 ID=mRNA_L-elsbetiae_contig6674.15405.1|Name=mRNA_L-elsbetiae_contig6674.15405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig6674:1338..6544+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCGCGAAGGAGCGCATGGACAAGTCGATCGAAAGCGTGCGGCT
CAACCTCGAAACCCTCCGAACCGGTCGGGCGAAATGGCGTCCGCGAAGGA
GCGCATGGACAAGTCGATCGAAAGCGTGCGGCTCAACCTCGAAACCCTCC
GAACCGGTCGGGCGAACCCCAAGATCCTCGACCGCGTAGTGGTGGACTGC
TACGGGGCGGAGACGCCCCTGAACCAAGTCGCTTCCGTCAAGACCACCAG
CCCCAAGATCCTCGACCGCGTAGTGGTGGACTGCTACGGGGCGGAGACGC
CCCTGAACCAAGTCGCTTCCGTCAAGACCACCAGCGCCACCGCGCTGTTG
GTTGAGTCTTACGACCCGACCATCTTGGCCGACATCGCCTCTGCTATCCA
AGAGGCGGATTTGGGATTCACCCCCAACAATGATGGCAGCGCCACCGCGC
TGTTGGTTGAGTCTTACGACCCGACCATCTTGGCCGACATCGCCTCTGCT
ATCCAAGAGGCGGATTTGGGATTCACCCCCAACAATGATGGCAGCGTAAT
CCGGTTGAACATGCCCCCTGTGACGGAGGACCGCCGAAAGGAGCTTGCCA
AGGAGGCCAAGGGTCTTGGGGAGGAGGGCAAGCGTAATCCGGTTGAACAT
GCCCCCTGTGACGGAGGACCGCCGAAAGGAGCTTGCCAAGGAGGCCAAGG
GTCTTGGGGAGGAGGGCAAGGTTGCGATCCGCAACATCAGGAGGGAGGCT
GTGGACGCGGTCAAGAAGGCGGAAAAGGCCAAGAACTTGGGGAAGGACCA
GGTTGCGATCCGCAACATCAGGAGGGAGGCTGTGGACGCGGTCAAGAAGG
CGGAAAAGGCCAAGAACTTGGGGAAGGACCAGTCGAAGGACGCACAAGAT
GCGATCCAGAAGCTCACCGACGCGACGACCAAGACGATAGACGAGAAGGT
CTCCACCAAGGAAAAGGAGATCCTTAAAGTATAATCGAAGGACGCACAAG
ATGCGATCCAGAAGCTCACCGACGCGACGACCAAGACGATAGACGAGAAG
GTCTCCACCAAGGAAAAGGAGATCCTTAAAGTATAA
back to top