mRNA_L-elsbetiae_contig667.15400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig667.15400.1
Unique NamemRNA_L-elsbetiae_contig667.15400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: D8LBE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.430e-56
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 ASLARKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            ASLARKFAPLADRILVRRLVAKTQTAGG+YLPDSKLGKTNEGEVVAVGPGR+T +G KI VNV VG+TVLLPEYGGTTLTLGDEELSL RDEDILGKFQ
Sbjct:    2 ASLARKFAPLADRILVRRLVAKTQTAGGVYLPDSKLGKTNEGEVVAVGPGRVTGSGTKIEVNVKVGETVLLPEYGGTTLTLGDEELSLFRDEDILGKFQ 100          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A836C8A7_9STRA (10 kDa heat shock protein-like protein, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.570e-35
Identity = 57/94 (60.64%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   16 RKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKF 297
            RK  PLADRILV+R+V K QTAGG++LP++K+ K NE EV+AVGPGR T+ G  + ++++VGDTVLLPEYGG T++L  E+++L+R+E+ILGKF
Sbjct:    5 RKLIPLADRILVKRIVPKAQTAGGVFLPETKMAKLNEAEVIAVGPGRRTEDGKVVPMSISVGDTVLLPEYGGHTVSLSGEDVTLLREEEILGKF 98          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A4D9DF31_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DF31_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.280e-33
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   16 RKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKF 297
            RK  PLADRILV+R++ KTQTAGG++LP++KL K NEG+V+A+G G     G  I  +V  GDTVLLPEYGG T+ LGDEE  L RDED+LGKF
Sbjct:    4 RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAIGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 97          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A5A8EDG3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDG3_CAFRO)

HSP 1 Score: 118 bits (295), Expect = 1.460e-32
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   16 RKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            R+  PLADR+LVRR+V + +TAGG+ LP+S + K NEGEVVAVGPG +   G + AV V VGDTVLLPEYGG T+ +GD+E  L RDEDILGKF+
Sbjct:    7 RRLVPLADRVLVRRVVPELKTAGGVLLPESGV-KKNEGEVVAVGPGALDRDGKRRAVAVAVGDTVLLPEYGGHTVKMGDQEFQLFRDEDILGKFE 100          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: W7TMI6_9STRA (10 kDa chaperonin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMI6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.460e-32
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   16 RKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKF 297
            RK  PLADRILV+R++ KTQTAGG++LP++KL K NEG+V+AVG G     G  I  +V  GDTVLLPEYGG T+ LGDEE  L RDED+LGKF
Sbjct:   67 RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A7S1V0N9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0N9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.850e-31
Identity = 61/97 (62.89%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   10 LARKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            LAR   PL DRILVRR     QTAGGIYLP+S     NEGEVVAVGPG    TGA  A N+  GD+VLLPEYGGT + L DEE+ L R+ DILGKF+
Sbjct:   32 LARALQPLGDRILVRRAAKDVQTAGGIYLPESTSKDANEGEVVAVGPGERDVTGALHAPNLKAGDSVLLPEYGGTKVKLDDEEVFLFRESDILGKFE 128          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A7S1G1M3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1M3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.300e-31
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   13 ARKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            +R FAPL DR+LVRR   + QTA GIYLP +    +NEG VVAVGPG +  TG     NV  GD+VLLPEYGGT +T+ DEE+ L R++DILGKFQ
Sbjct:    9 SRSFAPLGDRVLVRRAPKEVQTASGIYLPSAAEKNSNEGTVVAVGPGLVDATGTLHPANVTAGDSVLLPEYGGTKVTVEDEEMFLFREDDILGKFQ 104          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: UPI000711E23E (chaperone HSP10-like protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E23E)

HSP 1 Score: 114 bits (286), Expect = 1.130e-30
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   19 KFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            K  PLADR+LV+RLVAK QTA GI LP++ + K N+G+V+A GPGR+ + G  I +N  VGD VLLPEYGGT   +GDEE +L  D DILGKF+
Sbjct:    9 KIIPLADRVLVKRLVAKAQTATGILLPETSVAKANQGKVLACGPGRLDNNGKLIPMNCKVGDRVLLPEYGGTPFKMGDEEYTLFCDCDILGKFE 102          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A2R5GKE4_9STRA (10 kDa chaperonin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKE4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.860e-30
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   16 RKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            RK  PLADR+LV+R V  TQTAGG++LP+S   K  E EVVAVGPGR    G  + + V VGD VLLPEYGG  +  GDEE  L R++DILGK+Q
Sbjct:    5 RKLIPLADRVLVKRAVPVTQTAGGVFLPESSTKKEPEAEVVAVGPGRRDQNGNIVPMTVEVGDKVLLPEYGGQAVQFGDEEFQLFRNDDILGKYQ 99          
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Match: A0A7S2DSP8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSP8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.560e-30
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    4 ASLARKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGPGRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ 300
            ASLA+   PLADR+LVRR++A+ QTAGGI+LP     K NE EV++VGPG  +  G    VNV VGD VLLPEYGG+ + +GDEE +L R+++ILGKF+
Sbjct:    2 ASLAKALIPLADRVLVRRVLAQAQTAGGIFLPTET--KQNEAEVISVGPGARSPEGNLFPVNVAVGDKVLLPEYGGSVVKIGDEEFTLFREQEILGKFE 98          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig667.15400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE6_ECTSI2.430e-5690.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8A7_9STRA2.570e-3560.6410 kDa heat shock protein-like protein, mitochondr... [more]
A0A4D9DF31_9STRA3.280e-3362.77Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5A8EDG3_CAFRO1.460e-3263.16Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
W7TMI6_9STRA1.460e-3263.8310 kDa chaperonin n=2 Tax=Nannochloropsis gaditana... [more]
A0A7S1V0N9_9STRA3.850e-3162.89Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1G1M3_9STRA5.300e-3159.38Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
UPI000711E23E1.130e-3059.57chaperone HSP10-like protein n=1 Tax=Blastocystis ... [more]
A0A2R5GKE4_9STRA1.860e-3058.9510 kDa chaperonin n=1 Tax=Hondaea fermentalgiana T... [more]
A0A7S2DSP8_9STRA2.560e-3057.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig667contigL-elsbetiae_contig667:20181..20678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.3e-42
Seed eggNOG ortholog2880.D8LBE6
Preferred nameHSPE1
KEGG koko:K04078
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006919,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009987,GO:0010033,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019222,GO:0022607,GO:0030150,GO:0030162,GO:0031323,GO:0031325,GO:0031974,GO:0032268,GO:0032270,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035966,GO:0042026,GO:0042221,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0045862,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051131,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0052547,GO:0052548,GO:0055085,GO:0060255,GO:0061077,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:1990542,GO:2000116,GO:2001056
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0234@1,KOG1641@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-27_004240.1
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.193748-CDS-L-elsbetiae_contig667:20180..202551622816738.193748-CDS-L-elsbetiae_contig667:20180..20255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 20181..20255 +
1691683776.802003-CDS-L-elsbetiae_contig667:20180..202551691683776.802003-CDS-L-elsbetiae_contig667:20180..20255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 20181..20255 +
1622816738.2067506-CDS-L-elsbetiae_contig667:20453..206781622816738.2067506-CDS-L-elsbetiae_contig667:20453..20678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 20454..20678 +
1691683776.8144631-CDS-L-elsbetiae_contig667:20453..206781691683776.8144631-CDS-L-elsbetiae_contig667:20453..20678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 20454..20678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig667.15400.1prot_L-elsbetiae_contig667.15400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig667 20181..20678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig667.15400.1

>prot_L-elsbetiae_contig667.15400.1 ID=prot_L-elsbetiae_contig667.15400.1|Name=mRNA_L-elsbetiae_contig667.15400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
QASLARKFAPLADRILVRRLVAKTQTAGGIYLPDSKLGKTNEGEVVAVGP
GRITDTGAKIAVNVNVGDTVLLPEYGGTTLTLGDEELSLIRDEDILGKFQ
back to top

mRNA from alignment at L-elsbetiae_contig667:20181..20678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig667.15400.1 ID=mRNA_L-elsbetiae_contig667.15400.1|Name=mRNA_L-elsbetiae_contig667.15400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig667:20181..20678+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTCTCTCGCAAGAAAGTTTGCACCTCTCGCGGACCGTATCCTGGT CAGGCGACTGGTAGCAAAAACGCAGGTGAGATATATGAGTTCTTCTGTGT GTATCTCGTTGTACCCCTTTGAACTGCTGTTGTCAAGCCAGCTTCTCCTT CTGCTAAGCCTCTGCTATGTGTAACCCGTAGAGACACGAAACGGGCCGCG TGTGGTGCTGGTGGGTGTACTGGGGCCGCAAAAGAGACTCACCGCACCCC ACGCGATCCGTTGGCCCTCTCAGACAGCTGGTGGGATCTACCTTCCGGAC AGTAAGCTCGGCAAGACCAATGAGGGCGAGGTTGTTGCGGTAGGGCCAGG TCGCATTACGGACACAGGCGCCAAGATTGCTGTCAATGTCAATGTAGGGG ATACCGTACTACTACCGGAGTACGGCGGGACGACGTTGACTCTGGGAGAT GAAGAGTTGAGCTTGATCCGCGACGAAGACATCCTCGGGAAGTTCCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig667:20181..20678+

>mRNA_L-elsbetiae_contig667.15400.1 ID=mRNA_L-elsbetiae_contig667.15400.1|Name=mRNA_L-elsbetiae_contig667.15400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig667:20181..20678+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTCTCTCGCAAGAAAGTTTGCACCTCTCGCGGACCGTATCCTGGT
CAGGCGACTGGTAGCAAAAACGCAGCAGGCCTCTCTCGCAAGAAAGTTTG
CACCTCTCGCGGACCGTATCCTGGTCAGGCGACTGGTAGCAAAAACGCAG
ACAGCTGGTGGGATCTACCTTCCGGACAGTAAGCTCGGCAAGACCAATGA
GGGCGAGGTTGTTGCGGTAGGGCCAGGTCGCATTACGGACACAGGCGCCA
AGATTGCTGTCAATGTCAATGTAGGGGATACCGTACTACTACCGGAGTAC
GGCGGGACGACGTTGACTCTGGGAGATGAAGAGTTGAGCTTGATCCGCGA
CGAAGACATCCTCGGGAAGTTCCAGACAGCTGGTGGGATCTACCTTCCGG
ACAGTAAGCTCGGCAAGACCAATGAGGGCGAGGTTGTTGCGGTAGGGCCA
GGTCGCATTACGGACACAGGCGCCAAGATTGCTGTCAATGTCAATGTAGG
GGATACCGTACTACTACCGGAGTACGGCGGGACGACGTTGACTCTGGGAG
ATGAAGAGTTGAGCTTGATCCGCGACGAAGACATCCTCGGGAAGTTCCAG
back to top