mRNA_L-elsbetiae_contig667.15396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig667.15396.1
Unique NamemRNA_L-elsbetiae_contig667.15396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: D8LBF3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF3_ECTSI)

HSP 1 Score: 582 bits (1499), Expect = 3.090e-207
Identity = 329/369 (89.16%), Postives = 343/369 (92.95%), Query Frame = 1
Query:    1 MGDNDAFMEDFGDSLNDEGDPYQMKTGRNAADALDMSLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKNFKRFEECQAVRRHEQSIADSILEEERALQEQLRAXXXXXXXXXXXXXXRAEERRKTEEKG 1107
            M DNDAFMED+GDSLND GDPY+ KT RNAA+ALD SLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEI KD RIEFWL LVKQNATPPTARI+VNS+TARALAK+MWTNTSLTSLDLS NGIDDAAG YVARLLKRNTAL+NVALGSNQLGV ACRAFGESL SNSTLKCLSLESN LT DG N+SGI+AL DM S+NSTLTSVNLWRCALGAEAG ALSRGMESNHTIT L+VGLNGLAMADQHKVKTAL+ NFKRFEECQAVRR E SIAD IL EE+A+QEQLRAXXXXXXXXXXXXXX AEERRK EEKG
Sbjct:    1 MSDNDAFMEDYGDSLNDAGDPYETKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLNLVKQNATPPTARIDVNSVTARALAKSMWTNTSLTSLDLSRNGIDDAAGTYVARLLKRNTALVNVALGSNQLGVFACRAFGESLCSNSTLKCLSLESNSLTSDGANMSGIQALTDMFSKNSTLTSVNLWRCALGAEAGVALSRGMESNHTITFLEVGLNGLAMADQHKVKTALENNFKRFEECQAVRRQELSIADKILAEEKAMQEQLRAXXXXXXXXXXXXXXXAEERRKAEEKG 369          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A835YIK2_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK2_9STRA)

HSP 1 Score: 256 bits (654), Expect = 6.460e-79
Identity = 155/330 (46.97%), Postives = 197/330 (59.70%), Query Frame = 1
Query:  112 LQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKNFKRFEECQAVRRHEQSIADSILEEERALQEQLRAXXXXXXXXXXXXXXRAEERRKTEE 1101
            LQAPNANDFSNARLIEELE R  R +GFRDQD++ LQK+LDAEFE EKE +I+   EK+EQA K+AGLQR+R  LE+QL EE  E+ ++  +  WL+LVKQ+ TP TARIEVNSI+ARALAKAMWTNTSLTSLDL+ N +DD AGAY                                               PLT +GE  +G R +   LS+N+ LTS+NLWRC LG  AG  L+ G+++N TIT L++G N LA++D  ++   +  N   ++  Q     +Q   D IL+EE+  Q+ LR               RAEERR  EE
Sbjct:   46 LQAPNANDFSNARLIEELEGRRMRPTGFRDQDIIALQKVLDAEFEQEKEHLIRQHNEKKEQAMKEAGLQRRRAQLEKQLTEEKQEVAQNKIVAGWLSLVKQDETPLTARIEVNSISARALAKAMWTNTSLTSLDLARNNLDDFAGAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTNEGEKPAGFRYMVQALSKNAALTSLNLWRCGLGTPAGHDLAAGIQANRTITFLELGNNSLALSDLRQIGARVKDNRCHYDALQQQAMAKQREQDRILQEEKKAQDLLRKERELHDWLEAQRLLRAEERRAEEE 375          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A6H5JI07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI07_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 9.370e-72
Identity = 125/136 (91.91%), Postives = 128/136 (94.12%), Query Frame = 1
Query:    1 MGDNDAFMEDFGDSLNDEGDPYQMKTGRNAADALDMSLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLV 408
            M DNDAFMED+GDSLND GDPY+ KT RNAA+ALD SLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEI KD RIEFWL LV
Sbjct:    1 MSDNDAFMEDYGDSLNDAGDPYEPKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLHLV 136          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A7R9VZE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZE3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.180e-61
Identity = 113/251 (45.02%), Postives = 170/251 (67.73%), Query Frame = 1
Query:  127 ANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNG 879
            AN  +   L++ELE R  +  GF   D   LQ+  D E EL  E+  + +RE RE  AK+A  QR+R+++E ++REE  EI +D R++ WL L ++   PP +RIEVN+I+AR+LAKA+ T++S+  LD+S  G+ D AGAY+ R L+ N  LI + LGSN+ G   C++ G++L+SN+ ++ +SLESNPLTG+  +ISGI A+A+MLS+N  L  ++LWRC  GA++G A++  M  N  +T ++VG NG
Sbjct:   50 ANALTLNELVQELEKRGLQARGFFADDAKVLQEKFDEEHELYVEAKRREKREAREADAKRAAEQRRRLLMETEVREEREEIGRDRRMKSWLLLTEEGMAPPHSRIEVNNISARSLAKALLTDSSILCLDVSNLGLSDLAGAYLCRALRSNRTLIKIELGSNKFGPKTCKSLGDALTSNNVVRFVSLESNPLTGEKNDISGIIAIAEMLSKNKALRYLSLWRCGTGADSGKAIADAMAFNDALTCIEVGYNG 300          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: F0Y577_AURAN (F-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y577_AURAN)

HSP 1 Score: 177 bits (450), Expect = 7.240e-46
Identity = 118/303 (38.94%), Postives = 167/303 (55.12%), Query Frame = 1
Query:   28 DFGDSLNDEGDPYQMKTGRNAADALDMS-LQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKNFK 933
            D GD L D  D  +   GR   D++D++ L+  +A       L+ E+E R+    GF + D   LQK  D E   E E I + +RE+R+++  +A LQ+KR+ LE+QLREE   +  D +IE WL++V+ + T P+ARI VNS+TARALAKAMW N SLTSLDLS N + D AGA + R+LKR                                          T +  + +G+ ALA  LS N++LT +NLWRC LG  AGA L++ +  N +I  LDVG NG+ +AD+ ++   +D N K
Sbjct:   12 DAGDVLEDADDGDE--NGREREDSIDLADLKPMDAFLMKMEDLVTEMERRHLHPKGFFNDDAKELQKYFDQEHFKELEKIKEERREQRQRSXMKAQLQKKRLQLEKQLREEQDAVANDPQIEAWLSVVRSDQTRPSARIGVNSVTARALAKAMWNNKSLTSLDLSRNDLSDFAGAQIGRMLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNESTDQTGVVALAQALSSNASLTLLNLWRCDLGTTAGAELAKALHLNSSIINLDVGNNGVLVADKRRIADKVDANKK 312          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A7S3ZT07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT07_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.380e-42
Identity = 112/319 (35.11%), Postives = 164/319 (51.41%), Query Frame = 1
Query:   49 DEGDPYQMKTGRNAADALDMSLQAP-NANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKNFKRFEECQAVRRHEQSIADSILEEE 1002
            D+GD +   TG +  D LD S   P +A +     L+ E E R     GF + D   LQK+LD EF    E +   +R   ++   +A LQ+KR+ LE+QLREE   I      + WL  +K N T    RIE +SI  RALAKA+W+++S+T LDLS NG+ D AGA + R+LKRN                                  ++E+NPLT +  + +G+ ALA  L  N+TLT +N+WRC LG  AGAA++  + +N T+   DVG  G+   D  ++   +  N +   E +A  + E++  D +  EE
Sbjct:   21 DDGDDF---TGGD--DDLDFSDMKPMDAFEMKMEDLVVEFERRGMHPKGFFNDDARELQKVLDKEFSENLEKLKAEKRAALQRNRMKAKLQKKRLQLEKQLREEQDAIHDSLDAKAWLNTIKNNQTRDACRIECDSIVCRALAKALWSSSSITCLDLSRNGLSDFAGAQLGRMLKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMETNPLTNESTDQTGVVALAKALGSNTTLTRLNMWRCDLGTAAGAAIADALVANETLIDFDVGHGGILELDAQRIADRIAHNKR---ETKAKNKREKAYRDQLAREE 331          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A7S3XPA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPA2_HETAK)

HSP 1 Score: 154 bits (389), Expect = 2.130e-39
Identity = 113/314 (35.99%), Postives = 155/314 (49.36%), Query Frame = 1
Query:   13 DAFMEDFGDSLNDEGDPYQM-------KTGRNAADALDMSLQAP-NANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDG-ENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKN 927
            DA  ++F D L+   DP           TG    D +D+    P +A   +N  L  ELE R  +  GF   D   LQK  D E E      +K + E++E+ A QAGL R++ ++E+QL+EE+  I++D R E WL LV+ +ATPP AR+E+ S+ AR LAKA+W N SL SLDLS NG+DD AGA+                                               PLT  G    +G    ADML  N+TLTS+NL+RC LG EAG  L  G+E N ++  LDVG N    +   ++   + +N
Sbjct:    7 DAVNKEFEDLLDHFADPDDEIDITAFGATG--TTDLMDLQDSQPRDALRLTNDELNAELEMRGEKPKGFFTDDAKVLQKYFDVEHEEYLAKQMKERAEQQEKLAAQAGLIRRKRLVEKQLKEELLAIQRDRRAEHWLALVRGDATPPQARVELGSVAARCLAKALWGNGSLVSLDLSRNGLDDKAGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTESGLAEKTGAPEFADMLKHNNTLTSLNLFRCHLGPEAGTELLGGLEQNASLVFLDVGGNHFLQSHDARINGKIQEN 318          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: B8C189_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C189_THAPS)

HSP 1 Score: 146 bits (368), Expect = 5.520e-37
Identity = 92/255 (36.08%), Postives = 143/255 (56.08%), Query Frame = 1
Query:  151 LIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQA-------AKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMAD 894
            ++ ELE +  +  GF   D   +Q+  D E E       ++ ++KR +A       AKQ   +RK  +LE+++ +E   I  D ++  W  L+   + P   RI++N I++RALAKA+W+N+ + SLD+S   + D AGAY++R L+ N  L+ + LG N  G    R+  +SL  N TL+ LSLESNPL  D +    I   +  L  N+ LTS++LWRC LG EAG  LS  +  N ++ +++VG N    +D
Sbjct:   91 ILTELERKGIQPIGFYSDDAKRVQRCFDQEHE-------EYVKDKRNEALAAKVYEAKQQAERRKAALLEQEIVDEKKAISNDLQLLSWFNLLSTQSCPRHCRIDINDISSRALAKALWSNSRIQSLDVSNMHLSDLAGAYLSRSLQNNICLVKLELGGNAFGSKTLRSLADSLFVNRTLQFLSLESNPLAKD-DTRECISLFSSALESNTRLTSLSLWRCGLGLEAGRMLSNSISKNSSLIIVEVGYNTFDSSD 337          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A8K1CCX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCX8_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 5.620e-36
Identity = 108/305 (35.41%), Postives = 154/305 (50.49%), Query Frame = 1
Query:  121 PNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKN---FKRFEECQAVRRHEQSIADSILEEERALQEQLR 1026
            P+A   +   +  E+ +R  +  GF + D   LQ+  + E   EKE+ +  + +   +   +  + R+RM  ER+LREE++EI +D R+E WL L K+N TP  A + ++SI  RAL K++  N SL SL LS N +DDAAG Y+A LLKRNT                                    SNPLT D +++SGI ALA+            LWR  LG + G  +++G+E N T+  +DVG N +A AD  ++ T L KN   F  FE  Q   R  Q  A    E+ER  Q+ LR
Sbjct:   46 PDAFALTQNEIRREMIDRGIQPKGFYNDDAARLQEEFNREHAAEKEARMTQKLQFAAKTYLKETVHRRRMERERELREEVAEIAQDPRLEVWLDLAKRNETPTHATLRLSSIGTRALGKSLVLNHSLQSLSLSRNALDDAAGKYLALLLKRNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNPLTDDEKDMSGIAALANXXXXXXXXXXXXLWRTRLGTDGGKIIAQGVEKNTTLLCVDVGNNRIAAADGVRIDTQLKKNRRGFDAFEGKQIAVRQAQLTA---AEQERGRQQALR 347          
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Match: A0A662WJZ9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJZ9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.720e-36
Identity = 93/277 (33.57%), Postives = 149/277 (53.79%), Query Frame = 1
Query:  121 PNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVNSITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVALGSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADMLSRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQHKVKTALDKNFKRFEECQ 951
            P+A   +   +  E+ +R  +  GF + D   LQ+  + E   EKES ++ + +   ++  +  + R+R+  E+++REE+ EI K+ ++E WL L K + TP  A + V+S+ ARAL K +    SL SL+LS N +DDA G ++A LLKRNT L  +                                 PLT D ++ SG+ AL  ML++N+TL ++NLWR  LG+E G  L+ G+  N+T+  LD+G N +  +D   +   L KN ++FE+ Q
Sbjct:   48 PDAFALAQNEIRREMVDRGIQPKGFYNDDAARLQEEFNREHAAEKESRMQQKLQFAAKSYLRETVHRRRLEREKEVREEVEEIAKNPQLEVWLGLAKADETPKHADLRVSSVGARALCKTLAFTHSLRSLNLSRNDLDDATGKWLALLLKRNTTLSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTDDEKDFSGVAALGSMLTKNTTLRTLNLWRTRLGSEGGKQLALGLAQNNTLVCLDMGNNRIGTSDAVAIDVRLKKNREKFEQYQ 324          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig667.15396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBF3_ECTSI3.090e-20789.16Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YIK2_9STRA6.460e-7946.97Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A6H5JI07_9PHAE9.370e-7291.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VZE3_9STRA8.180e-6145.02Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
F0Y577_AURAN7.240e-4638.94F-box domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S3ZT07_9STRA5.380e-4235.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XPA2_HETAK2.130e-3935.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C189_THAPS5.520e-3736.08Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A8K1CCX8_PYTOL5.620e-3635.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WJZ9_9STRA5.720e-3633.57Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig667contigL-elsbetiae_contig667:3888..5897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score587.0
Seed ortholog evalue6e-165
Seed eggNOG ortholog2880.D8LBF3
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons3
Model size1110
Cds size1110
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.8023634-CDS-L-elsbetiae_contig667:3887..40491622816737.8023634-CDS-L-elsbetiae_contig667:3887..4049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 3888..4049 +
1691683776.5247006-CDS-L-elsbetiae_contig667:3887..40491691683776.5247006-CDS-L-elsbetiae_contig667:3887..4049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 3888..4049 +
1622816737.8149028-CDS-L-elsbetiae_contig667:4482..47251622816737.8149028-CDS-L-elsbetiae_contig667:4482..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 4483..4725 +
1691683776.5357385-CDS-L-elsbetiae_contig667:4482..47251691683776.5357385-CDS-L-elsbetiae_contig667:4482..4725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 4483..4725 +
1622816737.82512-CDS-L-elsbetiae_contig667:5192..58971622816737.82512-CDS-L-elsbetiae_contig667:5192..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 5193..5897 +
1691683776.5442958-CDS-L-elsbetiae_contig667:5192..58971691683776.5442958-CDS-L-elsbetiae_contig667:5192..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig667 5193..5897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig667.15396.1prot_L-elsbetiae_contig667.15396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig667 3888..5897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig667.15396.1

>prot_L-elsbetiae_contig667.15396.1 ID=prot_L-elsbetiae_contig667.15396.1|Name=mRNA_L-elsbetiae_contig667.15396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=370bp
MGDNDAFMEDFGDSLNDEGDPYQMKTGRNAADALDMSLQAPNANDFSNAR
LIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAA
KQAGLQRKRMMLERQLREEISEIEKDHRIEFWLTLVKQNATPPTARIEVN
SITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVARLLKRNTALINVAL
GSNQLGVLACRAFGESLSSNSTLKCLSLESNPLTGDGENISGIRALADML
SRNSTLTSVNLWRCALGAEAGAALSRGMESNHTITVLDVGLNGLAMADQH
KVKTALDKNFKRFEECQAVRRHEQSIADSILEEERALQEQLRAERQLREW
LEDQKQLRAEERRKTEEKG*
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mRNA from alignment at L-elsbetiae_contig667:3888..5897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig667.15396.1 ID=mRNA_L-elsbetiae_contig667.15396.1|Name=mRNA_L-elsbetiae_contig667.15396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig667:3888..5897+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACAACGATGCGTTCATGGAAGATTTTGGGGATTCGTTGAACGA CGAAGGTGATCCTTACCAGATGAAAACCGGCCGGAATGCGGCGGATGCAC TGGACATGTCGCTCCAAGCACCCAATGCCAACGACTTCTCAAATGCTCGA CTTATTGAAGAGGTAAGAGACTGGAACAACGCTCAACGCGCGTGCTCAAC GGATCGCTGCTGTGACACAAACTGCTGCTGCTGCTGAAGAGATCAAAGCA GGCATTGTACATCTAGAGGTCTGCTACTTTCTTGTATACGGAGTATATTG TAGGCTTTGTAGTATATGTTTGCATATCATGTACAATCTCTTGTTACATG TGCCCCCCAGGTGTGCAGCAGGATGAAGGAAATCTATATTATTATGTGAT CTTACTACGTACGTACAAGTATGCAGACCTCGTCAGTATATCTGGATATA GACTACTGGTACAGCGTAGTCTAGACCATCTAGTCTAGACCTCTGCTAGA TGTGCATCTACACTGACAAAATTGATCGTACTCGTACTACATAATAAATA TTTTCGATTTGCGGTGTGCCACTTTACGTGCTGCGCCATGTAAAGCTCGA GAACAGGAATTCCCGAGTCAGTGGGTTCCGAGATCAAGATGTGGTCACTC TGCAGAAAATTCTGGATGCCGAATTCGAGTTAGAAAAGGAGAGCATAATA AAACATCAGCGGGAAAAGAGAGAACAGGCGGCCAAGCAAGCAGGATTGCA AAGAAAACGTATGATGCTGGAGAGGCAACTGAGAGAAGAGATATCGGAAA TCGAGAAAGACCACAGAATTGAGTTCTGGCTGACCCTGGTGAGGCTCCTT GTACATAAATGCACGTCAGTAATGCAGAACTTATTTAGCGATGAGGGGAA AACACAGCGTGTGTGTGGGTTAAACCACTGCTGTGCGTGCCGTTTTTCTA GGCGCCGCTCTGCACGATCTGTAACACCCCCCAAAAGAAAGTACTCCCCG CTGCAATACAGCTTTCAAGTTGTTTTCAAGTTGAGTGCTTCCACTGATGT ATGTTGGTAGACGACACGGGCTGACATGATTGATCGACCGCTTTCTTCTC GGAGAAGAGATCGATAAATACAACTATATATGTAATACACGAAACGGTGT TCTTTAGTGGGTGTATGTAGTCAATTTGTCGTTGTACCGGTTTGGTGAGC CTGCAAACTCCAAACCATTCCTTGCATACAATATCAAACAATCCAAGGGC CGCAGACAATACAAACAGAGTCGTCCTTTGATTCATGCCCGTTTTCACTG CGCAGGTCAAGCAAAATGCCACGCCACCAACGGCTCGGATCGAAGTCAAT TCGATCACTGCTCGAGCCCTCGCCAAGGCGATGTGGACCAACACTTCGCT TACTAGCCTGGACTTATCGTGCAACGGCATTGACGATGCGGCCGGTGCAT ACGTGGCACGCTTACTCAAGCGCAACACCGCTCTCATCAACGTTGCGCTT GGATCCAACCAGCTCGGGGTCTTGGCGTGCAGAGCATTCGGCGAATCGCT GTCCTCGAACTCTACTCTCAAGTGTCTGAGTCTCGAATCCAATCCCTTGA CAGGGGACGGGGAGAATATTTCGGGTATAAGAGCGCTCGCCGACATGTTA AGTAGAAACAGCACCCTGACATCGGTCAATTTATGGAGGTGTGCGCTCGG GGCAGAGGCAGGGGCGGCCTTGTCACGGGGTATGGAGTCAAACCACACCA TCACGGTCCTCGACGTTGGGCTGAACGGCCTGGCGATGGCAGACCAGCAC AAGGTCAAAACTGCGTTGGACAAGAATTTCAAACGATTTGAAGAATGCCA AGCGGTACGCCGGCACGAGCAGAGTATCGCTGACAGTATTCTGGAAGAGG AAAGAGCCTTGCAGGAGCAGCTGAGGGCTGAGCGACAACTACGTGAGTGG CTCGAGGATCAAAAACAGCTGCGGGCCGAGGAACGCCGGAAGACAGAAGA GAAAGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig667:3888..5897+

>mRNA_L-elsbetiae_contig667.15396.1 ID=mRNA_L-elsbetiae_contig667.15396.1|Name=mRNA_L-elsbetiae_contig667.15396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2220bp|location=Sequence derived from alignment at L-elsbetiae_contig667:3888..5897+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGACAACGATGCGTTCATGGAAGATTTTGGGGATTCGTTGAACGA
CGAAGGTGATCCTTACCAGATGAAAACCGGCCGGAATGCGGCGGATGCAC
TGGACATGTCGCTCCAAGCACCCAATGCCAACGACTTCTCAAATGCTCGA
CTTATTGAAGAGATGGGCGACAACGATGCGTTCATGGAAGATTTTGGGGA
TTCGTTGAACGACGAAGGTGATCCTTACCAGATGAAAACCGGCCGGAATG
CGGCGGATGCACTGGACATGTCGCTCCAAGCACCCAATGCCAACGACTTC
TCAAATGCTCGACTTATTGAAGAGCTCGAGAACAGGAATTCCCGAGTCAG
TGGGTTCCGAGATCAAGATGTGGTCACTCTGCAGAAAATTCTGGATGCCG
AATTCGAGTTAGAAAAGGAGAGCATAATAAAACATCAGCGGGAAAAGAGA
GAACAGGCGGCCAAGCAAGCAGGATTGCAAAGAAAACGTATGATGCTGGA
GAGGCAACTGAGAGAAGAGATATCGGAAATCGAGAAAGACCACAGAATTG
AGTTCTGGCTGACCCTGCTCGAGAACAGGAATTCCCGAGTCAGTGGGTTC
CGAGATCAAGATGTGGTCACTCTGCAGAAAATTCTGGATGCCGAATTCGA
GTTAGAAAAGGAGAGCATAATAAAACATCAGCGGGAAAAGAGAGAACAGG
CGGCCAAGCAAGCAGGATTGCAAAGAAAACGTATGATGCTGGAGAGGCAA
CTGAGAGAAGAGATATCGGAAATCGAGAAAGACCACAGAATTGAGTTCTG
GCTGACCCTGGTCAAGCAAAATGCCACGCCACCAACGGCTCGGATCGAAG
TCAATTCGATCACTGCTCGAGCCCTCGCCAAGGCGATGTGGACCAACACT
TCGCTTACTAGCCTGGACTTATCGTGCAACGGCATTGACGATGCGGCCGG
TGCATACGTGGCACGCTTACTCAAGCGCAACACCGCTCTCATCAACGTTG
CGCTTGGATCCAACCAGCTCGGGGTCTTGGCGTGCAGAGCATTCGGCGAA
TCGCTGTCCTCGAACTCTACTCTCAAGTGTCTGAGTCTCGAATCCAATCC
CTTGACAGGGGACGGGGAGAATATTTCGGGTATAAGAGCGCTCGCCGACA
TGTTAAGTAGAAACAGCACCCTGACATCGGTCAATTTATGGAGGTGTGCG
CTCGGGGCAGAGGCAGGGGCGGCCTTGTCACGGGGTATGGAGTCAAACCA
CACCATCACGGTCCTCGACGTTGGGCTGAACGGCCTGGCGATGGCAGACC
AGCACAAGGTCAAAACTGCGTTGGACAAGAATTTCAAACGATTTGAAGAA
TGCCAAGCGGTACGCCGGCACGAGCAGAGTATCGCTGACAGTATTCTGGA
AGAGGAAAGAGCCTTGCAGGAGCAGCTGAGGGCTGAGCGACAACTACGTG
AGTGGCTCGAGGATCAAAAACAGCTGCGGGCCGAGGAACGCCGGAAGACA
GAAGAGAAAGGGTGAGTCAAGCAAAATGCCACGCCACCAACGGCTCGGAT
CGAAGTCAATTCGATCACTGCTCGAGCCCTCGCCAAGGCGATGTGGACCA
ACACTTCGCTTACTAGCCTGGACTTATCGTGCAACGGCATTGACGATGCG
GCCGGTGCATACGTGGCACGCTTACTCAAGCGCAACACCGCTCTCATCAA
CGTTGCGCTTGGATCCAACCAGCTCGGGGTCTTGGCGTGCAGAGCATTCG
GCGAATCGCTGTCCTCGAACTCTACTCTCAAGTGTCTGAGTCTCGAATCC
AATCCCTTGACAGGGGACGGGGAGAATATTTCGGGTATAAGAGCGCTCGC
CGACATGTTAAGTAGAAACAGCACCCTGACATCGGTCAATTTATGGAGGT
GTGCGCTCGGGGCAGAGGCAGGGGCGGCCTTGTCACGGGGTATGGAGTCA
AACCACACCATCACGGTCCTCGACGTTGGGCTGAACGGCCTGGCGATGGC
AGACCAGCACAAGGTCAAAACTGCGTTGGACAAGAATTTCAAACGATTTG
AAGAATGCCAAGCGGTACGCCGGCACGAGCAGAGTATCGCTGACAGTATT
CTGGAAGAGGAAAGAGCCTTGCAGGAGCAGCTGAGGGCTGAGCGACAACT
ACGTGAGTGGCTCGAGGATCAAAAACAGCTGCGGGCCGAGGAACGCCGGA
AGACAGAAGAGAAAGGGTGA
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