mRNA_L-elsbetiae_contig6667.15394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6667.15394.1
Unique NamemRNA_L-elsbetiae_contig6667.15394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6667.15394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6667contigL-elsbetiae_contig6667:20..1356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1337
Cds size987
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.7079668-CDS-L-elsbetiae_contig6667:19..10061622816737.7079668-CDS-L-elsbetiae_contig6667:19..1006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6667 20..1006 +
1691683776.4574094-CDS-L-elsbetiae_contig6667:19..10061691683776.4574094-CDS-L-elsbetiae_contig6667:19..1006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6667 20..1006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.7185974-UTR-L-elsbetiae_contig6667:1006..13561622816737.7185974-UTR-L-elsbetiae_contig6667:1006..1356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6667 1007..1356 +
1691683776.4691265-UTR-L-elsbetiae_contig6667:1006..13561691683776.4691265-UTR-L-elsbetiae_contig6667:1006..1356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6667 1007..1356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6667.15394.1prot_L-elsbetiae_contig6667.15394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6667 20..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6667.15394.1

>prot_L-elsbetiae_contig6667.15394.1 ID=prot_L-elsbetiae_contig6667.15394.1|Name=mRNA_L-elsbetiae_contig6667.15394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=329bp
MHDGIYNMDKTGVYTLDGKVHFAKLPAGNHVAGMRAERGREPPAVLAALM
RPGVQRSPKSASTMAPPPGFSALPVMGGTAGHVAPPFGASSSTPAIAAPG
GSAVPAASAGAAAGEPVESAGVGTSSAPVAAVPSGRASSAVLAGDAAGWP
APRETRSTSVAEVAGGSATPAALAGGAAGPSTLPEGASSAAAVPGGSATS
AESADEGRRMERLGHQRCWRERRLLRCPEIVFPPLRWRKKGNRTGGRLEI
LRWRRMELKRRSWMELTRRERRIERRTGRWQSVLVFLTCPLHSGHPHTTT
TIPPAHCRRTNGISMHVCVFIGYFVFFW*
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mRNA from alignment at L-elsbetiae_contig6667:20..1356+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6667.15394.1 ID=mRNA_L-elsbetiae_contig6667.15394.1|Name=mRNA_L-elsbetiae_contig6667.15394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1337bp|location=Sequence derived from alignment at L-elsbetiae_contig6667:20..1356+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGACGGCATCTACAACATGGACAAGACCGGCGTATACACCCTTGA
CGGCAAGGTCCACTTCGCCAAGCTCCCCGCCGGCAACCACGTAGCAGGTA
TGCGCGCGGAACGGGGCCGTGAACCTCCGGCAGTGCTGGCGGCCTTGATG
CGCCCAGGAGTGCAGCGGAGCCCCAAGAGCGCGTCTACGATGGCGCCGCC
GCCTGGTTTTAGTGCTTTACCCGTGATGGGGGGGACGGCCGGGCACGTGG
CGCCACCGTTTGGAGCATCGTCATCTACGCCGGCAATTGCCGCCCCCGGT
GGCAGTGCTGTTCCCGCCGCGTCGGCGGGAGCAGCGGCCGGGGAACCCGT
GGAGTCGGCAGGAGTGGGAACGTCATCGGCGCCGGTGGCTGCAGTACCTA
GCGGTCGTGCTTCATCTGCCGTTTTGGCGGGTGATGCGGCTGGGTGGCCT
GCACCACGGGAGACAAGATCTACATCGGTGGCTGAGGTGGCTGGCGGTAG
TGCGACACCCGCTGCATTGGCGGGTGGAGCGGCCGGTCCATCGACGCTGC
CGGAGGGAGCGTCATCGGCGGCTGCGGTGCCTGGCGGTAGTGCTACATCC
GCTGAGTCGGCGGATGAAGGTCGGCGGATGGAGCGGCTGGGACATCAGCG
CTGCTGGAGGGAGCGCAGACTACTACGGTGCCCGGAAATCGTGTTCCCCC
CGCTACGTTGGAGGAAGAAGGGCAACCGGACGGGGGGGCGTTTGGAGATT
TTGCGGTGGAGACGGATGGAGCTGAAACGCCGGAGCTGGATGGAGCTGAC
GCGCCGAGAGAGACGGATAGAGCGGCGCACGGGGAGGTGGCAAAGTGTGC
TGGTGTTTCTGACATGTCCCCTGCATTCTGGGCATCCGCACACAACGACG
ACCATTCCGCCTGCCCATTGCCGCCGGACTAACGGTATTTCTATGCATGT
TTGTGTTTTTATTGGGTATTTTGTTTTTTTCTGGTAGCATTTCTTGGGTT
TTCTTGCAGAAGTACGGCCTACAAGCATCATGGGGGGGGGGATTTATGTG
CCATGCTTCTTGTAGCAGTACAGATACATGCATTTCTCGTGTTTTGCGCT
GGCCGTGTTTGTGCCTCTGGAAGTTGGGGAGGCTGATGGCCGTTTCATAT
GGGTTTGATGTTGGTTTTCTGCGTTTACGCTGACCTTGTTTGTGCCTCTG
GAAGTTGGGGGCTGATGGTCAAAACGCTGGGATTATATGGGTATTTTATA
CTTCTAGTATTTTATGTTTTGCGTTGACTTGTGTTGAGAATGGCTGAACC
TCACAGAGTAGGGGGGCCGACGGTCGAAACGCTTCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6667:20..1356+

>mRNA_L-elsbetiae_contig6667.15394.1 ID=mRNA_L-elsbetiae_contig6667.15394.1|Name=mRNA_L-elsbetiae_contig6667.15394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1974bp|location=Sequence derived from alignment at L-elsbetiae_contig6667:20..1356+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGACGGCATCTACAACATGGACAAGACCGGCGTATACACCCTTGA
CGGCAAGGTCCACTTCGCCAAGCTCCCCGCCGGCAACCACGTAGCAGGTA
TGCGCGCGGAACGGGGCCGTGAACCTCCGGCAGTGCTGGCGGCCTTGATG
CGCCCAGGAGTGCAGCGGAGCCCCAAGAGCGCGTCTACGATGGCGCCGCC
GCCTGGTTTTAGTGCTTTACCCGTGATGGGGGGGACGGCCGGGCACGTGG
CGCCACCGTTTGGAGCATCGTCATCTACGCCGGCAATTGCCGCCCCCGGT
GGCAGTGCTGTTCCCGCCGCGTCGGCGGGAGCAGCGGCCGGGGAACCCGT
GGAGTCGGCAGGAGTGGGAACGTCATCGGCGCCGGTGGCTGCAGTACCTA
GCGGTCGTGCTTCATCTGCCGTTTTGGCGGGTGATGCGGCTGGGTGGCCT
GCACCACGGGAGACAAGATCTACATCGGTGGCTGAGGTGGCTGGCGGTAG
TGCGACACCCGCTGCATTGGCGGGTGGAGCGGCCGGTCCATCGACGCTGC
CGGAGGGAGCGTCATCGGCGGCTGCGGTGCCTGGCGGTAGTGCTACATCC
GCTGAGTCGGCGGATGAAGGTCGGCGGATGGAGCGGCTGGGACATCAGCG
CTGCTGGAGGGAGCGCAGACTACTACGGTGCCCGGAAATCGTGTTCCCCC
CGCTACGTTGGAGGAAGAAGGGCAACCGGACGGGGGGGCGTTTGGAGATT
TTGCGGTGGAGACGGATGGAGCTGAAACGCCGGAGCTGGATGGAGCTGAC
GCGCCGAGAGAGACGGATAGAGCGGCGCACGGGGAGGTGGCAAAGTGTGC
TGGTGTTTCTGACATGTCCCCTGCATTCTGGGCATCCGCACACAACGACG
ACCATTCCGCCTGCCCATTGCCGCCGGACTAACGGTATTTCTATGCATGT
TTGTGTTTTTATTGGGTATTTTGTTTTTTTCTGGTAGATGCACGACGGCA
TCTACAACATGGACAAGACCGGCGTATACACCCTTGACGGCAAGGTCCAC
TTCGCCAAGCTCCCCGCCGGCAACCACGTAGCAGGTATGCGCGCGGAACG
GGGCCGTGAACCTCCGGCAGTGCTGGCGGCCTTGATGCGCCCAGGAGTGC
AGCGGAGCCCCAAGAGCGCGTCTACGATGGCGCCGCCGCCTGGTTTTAGT
GCTTTACCCGTGATGGGGGGGACGGCCGGGCACGTGGCGCCACCGTTTGG
AGCATCGTCATCTACGCCGGCAATTGCCGCCCCCGGTGGCAGTGCTGTTC
CCGCCGCGTCGGCGGGAGCAGCGGCCGGGGAACCCGTGGAGTCGGCAGGA
GTGGGAACGTCATCGGCGCCGGTGGCTGCAGTACCTAGCGGTCGTGCTTC
ATCTGCCGTTTTGGCGGGTGATGCGGCTGGGTGGCCTGCACCACGGGAGA
CAAGATCTACATCGGTGGCTGAGGTGGCTGGCGGTAGTGCGACACCCGCT
GCATTGGCGGGTGGAGCGGCCGGTCCATCGACGCTGCCGGAGGGAGCGTC
ATCGGCGGCTGCGGTGCCTGGCGGTAGTGCTACATCCGCTGAGTCGGCGG
ATGAAGGTCGGCGGATGGAGCGGCTGGGACATCAGCGCTGCTGGAGGGAG
CGCAGACTACTACGGTGCCCGGAAATCGTGTTCCCCCCGCTACGTTGGAG
GAAGAAGGGCAACCGGACGGGGGGGCGTTTGGAGATTTTGCGGTGGAGAC
GGATGGAGCTGAAACGCCGGAGCTGGATGGAGCTGACGCGCCGAGAGAGA
CGGATAGAGCGGCGCACGGGGAGGTGGCAAAGTGTGCTGGTGTTTCTGAC
ATGTCCCCTGCATTCTGGGCATCCGCACACAACGACGACCATTCCGCCTG
CCCATTGCCGCCGGACTAACGGTATTTCTATGCATGTTTGTGTTTTTATT
GGGTATTTTGTTTTTTTCTGGTAG
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