mRNA_L-elsbetiae_contig6662.15391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6662.15391.1
Unique NamemRNA_L-elsbetiae_contig6662.15391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6662.15391.1 vs. uniprot
Match: A0A6H5K4K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K0_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.020e-12
Identity = 119/327 (36.39%), Postives = 149/327 (45.57%), Query Frame = 2 
Query:    2 CVLAVFPADTPLPTPSRLAWLATCEPPFTPRLVSDSGDHSLTPXXXXXXXXXXXXXXXXXXXARPGGATSCRRPRPLAAREXXXXXXXXXXXXXXXXXXXXXXXXPPSLDP---LQVERRMRHDEQRQGRREQLR-HQQLQQAPGTPDGGSAPTQQS-EPRNISPR-------RTLPGRQPLPPSPCPSPMLGCSSSLGMLSQXXXXXXXQ-QIPLGQHSDNGESQPRAEGEAAAAEM-----LLSGASTDSKEGVRISDRMKGESVGGHGGGRAGAATFFEGGRGQSRDGVDKQGSYPRRRAAGKDRGDLATPSSTSTQQEASVGT 928
            CVLAVF ADT  P PSRL WL TC+PPFTP+ V DSG+     XXXXXXXXXXXXXXXX    + G     RRP+  AAR                          P L P   L  +R  R +E + G+ +Q R H  + +A G   G   P Q S   RN+S              +  LPPS  PSP LG SS  GM SQ       + QI LGQH D+ + + + +G+  AA         + A  +S    R  + + GE+   H  G +      E GR + R  VD     PR R    D    A P +  T Q + VGT
Sbjct:  249 CVLAVFAADTSPPAPSRLEWLTTCDPPFTPQAVPDSGNGRPXXXXXXXXXXXXXXXXXXAATRQRGEGFDRRRPQAPAARRSPVYDQQQMT---------------PRLSPPVRLSPQRLRRQEEDQHGQHQQTRRHLLVDKAKGEQQGRQKPPQPSPNSRNVSQEVGSQSSVLNQGSKDMLPPS--PSPSLGGSSPPGMFSQSQSPSPWEHQIALGQHRDDSKEKGQGQGDEGAATAGDTAPFRASAGNNSAAAARAGEDLTGETRDPHVRGPSRGGMSAEDGRMRGR--VDFP-DPPRERQRDGDSSRAAAPGA-GTDQASCVGT 554
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6662.15391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4K0_9PHAE5.020e-1236.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6662contigL-elsbetiae_contig6662:5592..7986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4539
Ec32 orthologEc-07_005850.1
Exons2
Model size2142
Cds size1380
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6662.15391.1prot_L-elsbetiae_contig6662.15391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6662 6137..7516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.389393-UTR-L-elsbetiae_contig6662:5591..56651622816737.389393-UTR-L-elsbetiae_contig6662:5591..5665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 5592..5665 +
1691683776.2040415-UTR-L-elsbetiae_contig6662:5591..56651691683776.2040415-UTR-L-elsbetiae_contig6662:5591..5665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 5592..5665 +
1622816737.4005737-UTR-L-elsbetiae_contig6662:5918..61361622816737.4005737-UTR-L-elsbetiae_contig6662:5918..6136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 5919..6136 +
1691683776.2210052-UTR-L-elsbetiae_contig6662:5918..61361691683776.2210052-UTR-L-elsbetiae_contig6662:5918..6136Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 5919..6136 +
1622816737.426139-UTR-L-elsbetiae_contig6662:7516..79861622816737.426139-UTR-L-elsbetiae_contig6662:7516..7986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 7517..7986 +
1691683776.2397976-UTR-L-elsbetiae_contig6662:7516..79861691683776.2397976-UTR-L-elsbetiae_contig6662:7516..7986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6662 7517..7986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.4151053-CDS-L-elsbetiae_contig6662:6136..75161622816737.4151053-CDS-L-elsbetiae_contig6662:6136..7516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6662 6137..7516 +
1691683776.2298243-CDS-L-elsbetiae_contig6662:6136..75161691683776.2298243-CDS-L-elsbetiae_contig6662:6136..7516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6662 6137..7516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6662.15391.1

>prot_L-elsbetiae_contig6662.15391.1 ID=prot_L-elsbetiae_contig6662.15391.1|Name=mRNA_L-elsbetiae_contig6662.15391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=460bp
MPPISPPAPPSLDPLQVERRMRHDEQRQGRREQLRHQQLQQAPGTPDGGS
APTQQSEPRNISPRRTLPGRQPLPPSPCPSPMLGCSSSLGMLSQSQSQQQ
HQQIPLGQHSDNGESQPRAEGEAAAAEMLLSGASTDSKEGVRISDRMKGE
SVGGHGGGRAGAATFFEGGRGQSRDGVDKQGSYPRRRAAGKDRGDLATPS
STSTQQEASVGTLYAGNYEGRGCSKDKMVSGGGGTEETEVPAALLGDKYS
TNKIALPGRGGDAAGSDSSRRVALSPGGGAGGPAHSRSTTQPTPSRDSEQ
PIPTAPDEKRTAIGVGGARLDGSGAPATVSSSIWADLDGLASGDDSTSDD
TDRNDLATASGSSTMPSLLQGRALSNIATVVSTAAGKTDRGAAAVAGATV
SNGLERGDMQVMSGGVSPAAGGAGRGTIASGTAGFSLLAGAGGNLRDDDL
LDAALEDSE*
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mRNA from alignment at L-elsbetiae_contig6662:5592..7986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6662.15391.1 ID=mRNA_L-elsbetiae_contig6662.15391.1|Name=mRNA_L-elsbetiae_contig6662.15391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2395bp|location=Sequence derived from alignment at L-elsbetiae_contig6662:5592..7986+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCGTTCTTGCCGTATTTCCGGCGGACACTCCGCTGCCGACCCCGTCGC
GCCTGGCATGGCTAGCAACATGTGGTGAGTTCGACACCTGATTTGGTCTT
AACATTTCAACTACGCTGCACTCGTGTGCGTTGAGCTCTGCATGTCGCTC
TCGGCTCGTCCGCGATTGGAAGCGGTGTGCTGATAACTTCCGCCGGTTAT
ATGTTAACCATTAGTTTAAAGCACGCATATTGGCCGCCTTTACGGAAAGG
GTGACCGCATACAGCTATGCCATTCTTCCCACACGAAACAATTGTGCCCT
TTGTTGATGTTTGCTCTCTTTGAGCAGAGCCGCCGTTCACGCCTCGATTG
GTGTCCGATTCCGGCGACCACAGCTTGACCCCGCCGCCACCGTCGCGGAG
AACGCCCCCGCCGCCCACCACGCCGGCAGCATCAAGCGCGGCAAGGCCGG
GCGGTGCGACCAGCTGCCGAAGACCGCGCCCGCTGGCCGCCCGCGAAGAC
GCTGGGCAGCACTCGTCGCAAGGCCAGTCGCCGCAGCGGGAAACGATGCC
ACCGATTTCCCCTCCGGCGCCGCCATCATTGGATCCTCTGCAAGTTGAAC
GGCGGATGCGTCACGACGAGCAACGGCAGGGGCGGCGAGAGCAACTACGG
CACCAACAGCTGCAGCAGGCGCCAGGGACACCAGACGGCGGCAGCGCCCC
CACGCAGCAGAGTGAACCCCGAAACATATCGCCCCGTCGAACCCTCCCCG
GCCGGCAGCCGCTTCCTCCGTCCCCTTGCCCTTCTCCAATGCTGGGTTGC
TCGAGCTCTCTTGGGATGTTGTCTCAATCGCAGTCCCAGCAGCAACATCA
GCAGATCCCGCTTGGGCAGCACAGCGATAATGGGGAGAGCCAACCGAGAG
CAGAAGGGGAAGCGGCAGCGGCCGAAATGCTGCTGTCCGGGGCTTCAACT
GACAGCAAAGAAGGCGTCAGGATAAGTGACCGCATGAAAGGGGAGAGCGT
TGGTGGCCACGGTGGTGGTCGTGCGGGAGCTGCAACATTTTTTGAGGGTG
GGAGGGGGCAGTCGCGAGATGGAGTAGACAAGCAGGGCTCCTATCCAAGA
AGAAGGGCAGCTGGGAAAGATCGGGGTGATTTGGCCACTCCCAGTAGCAC
GAGCACCCAGCAGGAAGCATCGGTAGGAACGCTGTATGCTGGAAATTACG
AAGGCCGTGGTTGTAGTAAGGACAAGATGGTTAGCGGTGGCGGGGGAACA
GAAGAAACAGAGGTACCGGCGGCACTACTTGGTGACAAATATAGCACCAA
TAAAATTGCTCTGCCGGGACGAGGGGGAGATGCGGCAGGGTCAGATAGTT
CTAGACGGGTTGCTTTGTCTCCGGGTGGCGGGGCCGGGGGACCCGCGCAC
AGCAGGAGTACTACACAGCCTACCCCCAGCAGGGATTCTGAACAGCCTAT
CCCCACCGCGCCCGACGAAAAAAGAACGGCCATCGGCGTTGGAGGGGCAA
GGCTAGACGGAAGCGGAGCGCCTGCGACCGTTTCTTCTTCCATCTGGGCC
GACCTCGACGGCCTCGCTAGCGGTGATGACAGCACCAGCGATGACACTGA
TCGAAATGATCTGGCGACGGCGTCAGGAAGTTCAACGATGCCTTCGCTAC
TGCAGGGCCGTGCTTTGTCGAACATCGCTACTGTGGTTAGTACGGCCGCG
GGCAAGACCGACCGAGGCGCAGCAGCAGTCGCCGGCGCCACAGTAAGCAA
TGGACTGGAGCGTGGCGATATGCAAGTGATGTCTGGTGGAGTTTCGCCAG
CCGCAGGAGGAGCAGGGCGTGGGACCATCGCGTCGGGTACCGCAGGGTTT
TCGCTCTTAGCCGGGGCGGGAGGAAACCTTCGCGACGATGATCTGCTCGA
CGCCGCTTTAGAGGACAGCGAATGACTCGGCGAGCGTGAAAGAAAGGAAA
TCAGTCAGTCTGTTGCGTTTTCCCCCGACAGGTGTGCCGCTGTTGATGCT
AGCAGCCCCCCCCCGAGAATGGTTTACTCCCGTAAGCATGCCGTTTTGTT
TTTGCTTCCGGGTGTAGTCTTAGTTTTTGCCAGGTTTGCGGTCTAGTGGG
GATTTAATTTCGTGCTGCCCCTGATTGGATCGGTATTGCTTCGAAAATGC
ATTGTTTCGGAGAAGGAAGAAGCACGGGGGATGCCGGACTGAAATGTGTA
CAGTTGGAGTGGCGTGCGTGCTGTCAGTTCTCGAAATTGATGATACAATC
GCATCATCTGATTTGATATCAAGTATTTCGGCAAAATACCCCTCTTCGCC
ACGACTTTAGAGTAAATAGTAGGCGGACATACATGGTGGAACACTAGTGC
TGCGAGTGACTGCTTAATTGCGGGGTTTGTCCACGGCTTGAAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6662:5592..7986+

>mRNA_L-elsbetiae_contig6662.15391.1 ID=mRNA_L-elsbetiae_contig6662.15391.1|Name=mRNA_L-elsbetiae_contig6662.15391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2760bp|location=Sequence derived from alignment at L-elsbetiae_contig6662:5592..7986+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACCGATTTCCCCTCCGGCGCCGCCATCATTGGATCCTCTGCAAGT
TGAACGGCGGATGCGTCACGACGAGCAACGGCAGGGGCGGCGAGAGCAAC
TACGGCACCAACAGCTGCAGCAGGCGCCAGGGACACCAGACGGCGGCAGC
GCCCCCACGCAGCAGAGTGAACCCCGAAACATATCGCCCCGTCGAACCCT
CCCCGGCCGGCAGCCGCTTCCTCCGTCCCCTTGCCCTTCTCCAATGCTGG
GTTGCTCGAGCTCTCTTGGGATGTTGTCTCAATCGCAGTCCCAGCAGCAA
CATCAGCAGATCCCGCTTGGGCAGCACAGCGATAATGGGGAGAGCCAACC
GAGAGCAGAAGGGGAAGCGGCAGCGGCCGAAATGCTGCTGTCCGGGGCTT
CAACTGACAGCAAAGAAGGCGTCAGGATAAGTGACCGCATGAAAGGGGAG
AGCGTTGGTGGCCACGGTGGTGGTCGTGCGGGAGCTGCAACATTTTTTGA
GGGTGGGAGGGGGCAGTCGCGAGATGGAGTAGACAAGCAGGGCTCCTATC
CAAGAAGAAGGGCAGCTGGGAAAGATCGGGGTGATTTGGCCACTCCCAGT
AGCACGAGCACCCAGCAGGAAGCATCGGTAGGAACGCTGTATGCTGGAAA
TTACGAAGGCCGTGGTTGTAGTAAGGACAAGATGGTTAGCGGTGGCGGGG
GAACAGAAGAAACAGAGGTACCGGCGGCACTACTTGGTGACAAATATAGC
ACCAATAAAATTGCTCTGCCGGGACGAGGGGGAGATGCGGCAGGGTCAGA
TAGTTCTAGACGGGTTGCTTTGTCTCCGGGTGGCGGGGCCGGGGGACCCG
CGCACAGCAGGAGTACTACACAGCCTACCCCCAGCAGGGATTCTGAACAG
CCTATCCCCACCGCGCCCGACGAAAAAAGAACGGCCATCGGCGTTGGAGG
GGCAAGGCTAGACGGAAGCGGAGCGCCTGCGACCGTTTCTTCTTCCATCT
GGGCCGACCTCGACGGCCTCGCTAGCGGTGATGACAGCACCAGCGATGAC
ACTGATCGAAATGATCTGGCGACGGCGTCAGGAAGTTCAACGATGCCTTC
GCTACTGCAGGGCCGTGCTTTGTCGAACATCGCTACTGTGGTTAGTACGG
CCGCGGGCAAGACCGACCGAGGCGCAGCAGCAGTCGCCGGCGCCACAGTA
AGCAATGGACTGGAGCGTGGCGATATGCAAGTGATGTCTGGTGGAGTTTC
GCCAGCCGCAGGAGGAGCAGGGCGTGGGACCATCGCGTCGGGTACCGCAG
GGTTTTCGCTCTTAGCCGGGGCGGGAGGAAACCTTCGCGACGATGATCTG
CTCGACGCCGCTTTAGAGGACAGCGAATGAATGCCACCGATTTCCCCTCC
GGCGCCGCCATCATTGGATCCTCTGCAAGTTGAACGGCGGATGCGTCACG
ACGAGCAACGGCAGGGGCGGCGAGAGCAACTACGGCACCAACAGCTGCAG
CAGGCGCCAGGGACACCAGACGGCGGCAGCGCCCCCACGCAGCAGAGTGA
ACCCCGAAACATATCGCCCCGTCGAACCCTCCCCGGCCGGCAGCCGCTTC
CTCCGTCCCCTTGCCCTTCTCCAATGCTGGGTTGCTCGAGCTCTCTTGGG
ATGTTGTCTCAATCGCAGTCCCAGCAGCAACATCAGCAGATCCCGCTTGG
GCAGCACAGCGATAATGGGGAGAGCCAACCGAGAGCAGAAGGGGAAGCGG
CAGCGGCCGAAATGCTGCTGTCCGGGGCTTCAACTGACAGCAAAGAAGGC
GTCAGGATAAGTGACCGCATGAAAGGGGAGAGCGTTGGTGGCCACGGTGG
TGGTCGTGCGGGAGCTGCAACATTTTTTGAGGGTGGGAGGGGGCAGTCGC
GAGATGGAGTAGACAAGCAGGGCTCCTATCCAAGAAGAAGGGCAGCTGGG
AAAGATCGGGGTGATTTGGCCACTCCCAGTAGCACGAGCACCCAGCAGGA
AGCATCGGTAGGAACGCTGTATGCTGGAAATTACGAAGGCCGTGGTTGTA
GTAAGGACAAGATGGTTAGCGGTGGCGGGGGAACAGAAGAAACAGAGGTA
CCGGCGGCACTACTTGGTGACAAATATAGCACCAATAAAATTGCTCTGCC
GGGACGAGGGGGAGATGCGGCAGGGTCAGATAGTTCTAGACGGGTTGCTT
TGTCTCCGGGTGGCGGGGCCGGGGGACCCGCGCACAGCAGGAGTACTACA
CAGCCTACCCCCAGCAGGGATTCTGAACAGCCTATCCCCACCGCGCCCGA
CGAAAAAAGAACGGCCATCGGCGTTGGAGGGGCAAGGCTAGACGGAAGCG
GAGCGCCTGCGACCGTTTCTTCTTCCATCTGGGCCGACCTCGACGGCCTC
GCTAGCGGTGATGACAGCACCAGCGATGACACTGATCGAAATGATCTGGC
GACGGCGTCAGGAAGTTCAACGATGCCTTCGCTACTGCAGGGCCGTGCTT
TGTCGAACATCGCTACTGTGGTTAGTACGGCCGCGGGCAAGACCGACCGA
GGCGCAGCAGCAGTCGCCGGCGCCACAGTAAGCAATGGACTGGAGCGTGG
CGATATGCAAGTGATGTCTGGTGGAGTTTCGCCAGCCGCAGGAGGAGCAG
GGCGTGGGACCATCGCGTCGGGTACCGCAGGGTTTTCGCTCTTAGCCGGG
GCGGGAGGAAACCTTCGCGACGATGATCTGCTCGACGCCGCTTTAGAGGA
CAGCGAATGA
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