mRNA_L-elsbetiae_contig6661.15390.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6661.15390.1
Unique NamemRNA_L-elsbetiae_contig6661.15390.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6661.15390.1 vs. uniprot
Match: D7FWP7_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP7_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.930e-5
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:    5 NPEGSRAFELKLTLVGRVRTIVPYTSSNGTSSTTHKAVDSDDFLSEQISLGSFNGRVEAGTHTYPFSLSLPEDLLPS 235
            N + S A ELKL LVG V+T V Y++  G    T  A +  + LS  + LGSF G+  +G H + FS++LP  L PS
Sbjct:   33 NNKESSADELKLRLVGHVKTAVDYSTDKGEE--TKMAREDKEILSYDVQLGSFGGKAASGVHNFLFSVTLPAGLPPS 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6661.15390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWP7_ECTSI4.930e-542.86Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6661contigL-elsbetiae_contig6661:849..4798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2393
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6661.15390.1prot_L-elsbetiae_contig6661.15390.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6661 1414..3354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.3036852-UTR-L-elsbetiae_contig6661:848..10891622816737.3036852-UTR-L-elsbetiae_contig6661:848..1089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 849..1089 +
1691683776.1378193-UTR-L-elsbetiae_contig6661:848..10891691683776.1378193-UTR-L-elsbetiae_contig6661:848..1089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 849..1089 +
1622816737.3190594-UTR-L-elsbetiae_contig6661:1248..14131622816737.3190594-UTR-L-elsbetiae_contig6661:1248..1413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 1249..1413 +
1691683776.1509624-UTR-L-elsbetiae_contig6661:1248..14131691683776.1509624-UTR-L-elsbetiae_contig6661:1248..1413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 1249..1413 +
1622816737.3557081-UTR-L-elsbetiae_contig6661:3354..47981622816737.3557081-UTR-L-elsbetiae_contig6661:3354..4798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 3355..4798 +
1691683776.1899807-UTR-L-elsbetiae_contig6661:3354..47981691683776.1899807-UTR-L-elsbetiae_contig6661:3354..4798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6661 3355..4798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.3298762-CDS-L-elsbetiae_contig6661:1413..14421622816737.3298762-CDS-L-elsbetiae_contig6661:1413..1442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6661 1414..1442 +
1691683776.1702864-CDS-L-elsbetiae_contig6661:1413..14421691683776.1702864-CDS-L-elsbetiae_contig6661:1413..1442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6661 1414..1442 +
1622816737.342311-CDS-L-elsbetiae_contig6661:2840..33541622816737.342311-CDS-L-elsbetiae_contig6661:2840..3354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6661 2841..3354 +
1691683776.1808922-CDS-L-elsbetiae_contig6661:2840..33541691683776.1808922-CDS-L-elsbetiae_contig6661:2840..3354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6661 2841..3354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6661.15390.1

>prot_L-elsbetiae_contig6661.15390.1 ID=prot_L-elsbetiae_contig6661.15390.1|Name=mRNA_L-elsbetiae_contig6661.15390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MRKYFRATGTMTMVFRVDRLEVRTVEAIELSTVLRNDSSVTATAIDIKMK
QLTKWKARGHKSSKKRILASIVVPGSELSGAEPRAAGSERGQSAASIAEA
AREDVQQRLVGGDGAPYTIYVPSSALLSMKIGKKIEVTHWLSVKLKTSGL
GSSPKLSIPVQVRPPETAAGSQAMVDLPDQ*
back to top

mRNA from alignment at L-elsbetiae_contig6661:849..4798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6661.15390.1 ID=mRNA_L-elsbetiae_contig6661.15390.1|Name=mRNA_L-elsbetiae_contig6661.15390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3950bp|location=Sequence derived from alignment at L-elsbetiae_contig6661:849..4798+ (Laminarionema elsbetiae ELsaHSoW15)
GACAAACCCCGAGGGATCTCGCGCGTTTGAGCTGAAGCTGACACTGGTCG
GCCGCGTCAGGACCATCGTCCCGTACACTTCGTCAAACGGAACATCCTCG
ACCACCCACAAAGCAGTCGATTCCGACGACTTCCTTTCGGAGCAAATATC
GCTGGGGTCGTTCAATGGGAGGGTGGAAGCGGGAACGCACACCTACCCCT
TTTCCCTCTCGCTTCCGGAGGATTTGCTGCCGTCTACGGAGGTACGTCGG
GTTGGTTTTTGAGTTGGATTACCACCTAATACGTTGTCGATCTCGTTGCT
GGTTGGCTTCCTGCGAGCTGCGAAAGTAGAGGTTGTTGCAAGCCAATGGC
ACACGACATGTGATAAATATTGCGTTCCATACTGGTCGGCGGTTTCCCAG
GAATCCGGCTACGGCAGCTGCTCGGTTCGATACAGCCTCAAGGCGCGGCT
GAACAATGGAGTATTTTTCAGTGACCCGAAGTCGAAGCTACGCCTCAGAG
TATTGGGCAGCCGGTGCGAGACTGTCGCCGCCACACCAACCGTGGTGGGC
CCAACATCGAAGGTTATGCGGAAGTACTTTCGGGCCACCGGAACGTGAGT
GGTATAGATAATCTGCACATGCCGGCGTACAGATACTGATGTCCTGTGAA
TACAATACTCACAGAATGTCGTCATACGGCGCACTACTAGAAAACAGAAA
ATAATATAGAACGGAAATTTTCAAAAAATATGTTTTCACTTTTTTAACAC
CACCATGTGCTTGCTGTTCAATCCGTAGCTAACCTCATACATACATACAT
ACGACATTACCCTACTTGACAGGAAACATCATATTGTGATGCTTAGTCCA
CCTCGACTGATACATCTTCGATCACGGGCAAGTTCGAGGGTAACCCTAAT
GTTGATTGGCGTACGTTGTATCGCTGCAGCACCACACACAGTGCTTTCGG
ACAGCCGAATGCGATCGAGTCCGTACATCTACCAATCCCCAAACAATAAA
ACGCACAGCGTGCTTGCACTTACCATCAACGACCGTGCAACGCACCCATC
ACACTACTCCATAATCATGCCGTCGATTGTTGTGGTCATTTGCGCGGGGG
CTACATGTGCGACGGCGCCTTACTTTTTTAGTGTGGAATGTCATCCGTTC
CTCGCAGCTTCGGTGGCATCTAACATACGAAGTATTACGTAAAAACATAG
GAGTAAATTATAAGTATGAACTTTTGTGCGCGAGTACATCCGCGGTCCTG
CGTCCCTACTGCCTCGCAATCTTTCTTCCGTGATAACTGTATTTTCCTAT
GTAGATAGTTTGCATTCGATATCGACTCGGGCGCGACACCTTCGGACACG
CACGAAACTGCCCGCACCTTGCGTGCGCGCGACAAATTTCCTAGCATTTT
CTGCAAAACACGCGGCGCAACCGGATGTTACGTTCCACATATTTCCGATA
TTCGTGGCCGAAACACTCAATCTGTCGATCCGACTCTCGTCCGCCAACTT
TTGCTCTCTGCACCATTATCGGTCATCCGAGACCTCTTCACGTCGAACGG
TAACGAACGGCTTAACGGCGATTGCGCAGGCGGCGAGGAGGTAAAGGCAG
CTCTGATGCTCGCGAAATTTCCGAAAGAACAAGCAGGTCGCGCCGCTTCC
GTCGTTTCAATACTTGTCATTCGGGCCCCCGCGCCCGCTTTTGGCGGGGT
GGCCCTGTCTCTTCTCCTATGTAATTTGTTTCTATCGTGGCGGGCGTGGT
TTTTCCGACCAATGTACATATGTTCAGTCGCATCAGATCGCGAGGCCAGA
TCAGTTAGGGCCGTTGACATGATCCAGAAGGACTGCGTATCCCAAATGCA
AAAAAAAGTGTCCCCTTTCGCGTACAACAAGCGGAGATGGAACACAGCCT
GTGCGGTGAGAGGAATGTCGGATTTTTTATTGGTTCTTCTGCTATTTATC
GGCCCCCTCTCTCCTTCTCATCCCGCCCTGTTTGTTCCTCAGAATGACTA
TGGTCTTCCGCGTTGATCGACTGGAGGTACGGACGGTTGAGGCCATAGAG
CTCAGCACCGTGCTGCGAAACGACAGCTCGGTCACCGCGACCGCCATAGA
CATCAAGATGAAGCAGCTAACCAAGTGGAAGGCACGAGGCCACAAGAGCT
CGAAGAAGCGGATCCTCGCATCCATTGTAGTGCCTGGCTCCGAGCTCAGC
GGCGCCGAGCCGCGGGCTGCCGGGAGCGAGCGAGGGCAAAGCGCGGCCTC
CATTGCAGAAGCGGCCCGCGAAGACGTCCAGCAACGACTGGTCGGCGGAG
ATGGTGCTCCATACACGATCTACGTCCCCTCTAGCGCCCTGCTCTCCATG
AAGATTGGCAAGAAGATTGAAGTCACGCACTGGCTCAGCGTGAAGCTGAA
GACCTCGGGTTTGGGTTCATCTCCCAAGCTCTCAATCCCCGTGCAGGTAC
GGCCGCCGGAGACAGCAGCAGGTTCACAAGCTATGGTGGATCTGCCGGAC
CAGTAGTCTGCGGAGGGTGCCCCGTACGGCTGAAGTGGGGCCCAACGGGG
ACGACGCGCTCAACGCACAGTGCCCAAACAAGCGATGGTGACGGCAAAAA
AAAAGCCTTGCACGGTCGCAGGGAAACCTTTTGGAGCAGAAGCATCGTGT
TAGAGATCGTCTCTGTCTCCCACACTCCTACATATGACACGCTATGGAAG
CGTCCATGGGAACTTCCATAGCGTACTTCCACGAATGCTTGCTTGTACCT
TCCACGGAAGCTTCCACAGCTTCCGTGAAAGCATCCACCGCTTCCATGAG
AAGCTTCCATAGTGTGGCATGATAGTGTAGGTGATCCAGTCGTCCGCGTG
CTTGCTTCGGGCGCTCACGAGAAAATCGACGACACCAGAGATCCATGCGG
TACTGCAGCGCCTGTTGCCGAGCTTGGTGGCCTCTGGTTGTGCCGCGTCC
GGCCGAGACCGCCCCTCGGGTGAGAATGTGAAATGAGTGATCGAAGTAAA
TGCAGCCCTCTGTGGGGGGTTCGGCAGATTTTGCCGTTTTTGGTGTCAAC
CTCGCTTTCCGCTTTGGGGCCGCATGCCACATCGGCACACATCGGCAGAG
GTTGCCTTTGAGGTACGTGTGGGCGCGGGGTCGTGGAAGGAGTTCATTTT
GGTTCCACTGATTTTGGTGTCTTCCTCACGTTTCGCTTTGGGCCGGCATG
CCACATCGGTAGAGGTTGCCTTTTTGAGGCACGTGTGGGCGCGGGGTCGT
GGAGAAGGAGTTCAAAGTGGGTCTGTGTGTCTTAATTTCTGAAATTTCCA
CCAATAGCGGAAGCGATTCGTCGAGGCTTTGATGAAGATAGCGAAAACCA
TTCCGAAGCTTAGGATGGATCACCACACCTTTCTTTCCGGGAGGCATGAA
GCTCATTGTGAGCGTTGAGGCTGTTCGAACCTGTAAAAGCCATCGTGCCC
ATTTTTTTTCCTGGATATGTCGGAGAAGAAGCAGTTCACAGCAGACCTAA
GCAGGTGGGAGTGGGGAGATATCGTTTCTCGGGTGAATGAACGGCATACT
TTGTTCCGCGCATCGGTCGTGTACGAAACGTTCACGTTTTATTTTCAAGA
TGCTTTTGGTGTCCACAGCTGCGACTGTATACTGGCCTGTGAAACGGACA
TTGCAGGTTCTTTTACATTGCTCGTTGGTTGGAGCGAAGCCGACACAGAT
GTAGTTTCGGCGTTTATTCGAAGCCAACCGTGACGTGGTCAGGGGTCTTA
ATGAACATCAGAGCTTGATCCCAGTAACGAGTTAGTCGGTGTGCACACCC
TTTGCTCGCAGGGCCCAAGCATCTCCGGAGAAAACTTGTCACGTACTCTG
AGGACGGTGAGATAACCAAAGCCTTAATTAACGCTCTCATTCCGGTTCTT
GACCCTTCAAACTCGATGACCAGGACGAAGTCTGCACCCGCAAGAAGGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6661:849..4798+

>mRNA_L-elsbetiae_contig6661.15390.1 ID=mRNA_L-elsbetiae_contig6661.15390.1|Name=mRNA_L-elsbetiae_contig6661.15390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig6661:849..4798+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAGTACTTTCGGGCCACCGGAACATGCGGAAGTACTTTCGGGCC
ACCGGAACAATGACTATGGTCTTCCGCGTTGATCGACTGGAGGTACGGAC
GGTTGAGGCCATAGAGCTCAGCACCGTGCTGCGAAACGACAGCTCGGTCA
CCGCGACCGCCATAGACATCAAGATGAAGCAGCTAACCAAGTGGAAGGCA
CGAGGCCACAAGAGCTCGAAGAAGCGGATCCTCGCATCCATTGTAGTGCC
TGGCTCCGAGCTCAGCGGCGCCGAGCCGCGGGCTGCCGGGAGCGAGCGAG
GGCAAAGCGCGGCCTCCATTGCAGAAGCGGCCCGCGAAGACGTCCAGCAA
CGACTGGTCGGCGGAGATGGTGCTCCATACACGATCTACGTCCCCTCTAG
CGCCCTGCTCTCCATGAAGATTGGCAAGAAGATTGAAGTCACGCACTGGC
TCAGCGTGAAGCTGAAGACCTCGGGTTTGGGTTCATCTCCCAAGCTCTCA
ATCCCCGTGCAGGTACGGCCGCCGGAGACAGCAGCAGGTTCACAAGCTAT
GGTGGATCTGCCGGACCAGTAGAATGACTATGGTCTTCCGCGTTGATCGA
CTGGAGGTACGGACGGTTGAGGCCATAGAGCTCAGCACCGTGCTGCGAAA
CGACAGCTCGGTCACCGCGACCGCCATAGACATCAAGATGAAGCAGCTAA
CCAAGTGGAAGGCACGAGGCCACAAGAGCTCGAAGAAGCGGATCCTCGCA
TCCATTGTAGTGCCTGGCTCCGAGCTCAGCGGCGCCGAGCCGCGGGCTGC
CGGGAGCGAGCGAGGGCAAAGCGCGGCCTCCATTGCAGAAGCGGCCCGCG
AAGACGTCCAGCAACGACTGGTCGGCGGAGATGGTGCTCCATACACGATC
TACGTCCCCTCTAGCGCCCTGCTCTCCATGAAGATTGGCAAGAAGATTGA
AGTCACGCACTGGCTCAGCGTGAAGCTGAAGACCTCGGGTTTGGGTTCAT
CTCCCAAGCTCTCAATCCCCGTGCAGGTACGGCCGCCGGAGACAGCAGCA
GGTTCACAAGCTATGGTGGATCTGCCGGACCAGTAG
back to top