mRNA_L-elsbetiae_contig666.15389.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig666.15389.1
Unique NamemRNA_L-elsbetiae_contig666.15389.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A3L6V125_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V125_9STRA)

HSP 1 Score: 510 bits (1313), Expect = 7.380e-177
Identity = 236/249 (94.78%), Postives = 247/249 (99.20%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKL+VD+HVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKYRLMRQ+RMCKDLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKGIAK+VTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLP+PIENMILRYVK+KADWWTN+AHYNRERI+RGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  219 REILRLTKLLVDAHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYRLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPAWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGIAKTVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPSPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 467
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A1D6NUI8_MAIZE (Pre-mRNA-processing-splicing factor 8A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6NUI8_MAIZE)

HSP 1 Score: 498 bits (1281), Expect = 7.800e-176
Identity = 228/249 (91.57%), Postives = 244/249 (97.99%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKLVVD+++Q+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESHFDLELRAAVMHD+LD MPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTVC+KNLGRLTRLWLKAEQERQHNYLK
Sbjct:  136 REILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLK 384
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A7S0V611_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V611_9CRYP)

HSP 1 Score: 502 bits (1292), Expect = 5.710e-174
Identity = 233/249 (93.57%), Postives = 245/249 (98.39%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTK+VVDS+VQ+RLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKHLIYYRFNTGPVGKGPG GFWAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESH+DLELRAAVMHDILDMMPEGVK NKS+TILQHLSEAWRCWKANIPWKVPG+P PIENMILRYVKAKADWWTN+AHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:   51 REILRLTKIVVDSNVQFRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGVGFWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKQNKSKTILQHLSEAWRCWKANIPWKVPGMPIPIENMILRYVKAKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 299
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A7S0F341_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F341_9EUKA)

HSP 1 Score: 507 bits (1306), Expect = 3.690e-173
Identity = 238/249 (95.58%), Postives = 246/249 (98.80%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKLVVDSHVQYRLGNVDA+QLADGLQY FAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGR SKGIAK+VTKQRVESH+DLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPG+PAPIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTV KKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  564 REILRLTKLVVDSHVQYRLGNVDAYQLADGLQYIFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRSSKGIAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGMPAPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVTKKNLGRLTRLWLKAEQERQHNYLK 812
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A7L3HCZ3_9PASS (PRP8 factor (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L3HCZ3_9PASS)

HSP 1 Score: 504 bits (1298), Expect = 5.500e-173
Identity = 233/249 (93.57%), Postives = 244/249 (97.99%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            RE+LRLTKLVVDSHVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FF+RG+ PL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESHFDLELRAAVMHDILDMMPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVKAKADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLK
Sbjct:  385 REVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLK 633
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A3L6VBU4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VBU4_9STRA)

HSP 1 Score: 510 bits (1313), Expect = 2.450e-172
Identity = 236/249 (94.78%), Postives = 247/249 (99.20%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKL+VD+HVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKYRLMRQ+RMCKDLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKGIAK+VTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLP+PIENMILRYVK+KADWWTN+AHYNRERI+RGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  576 REILRLTKLLVDAHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYRLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPAWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGIAKTVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPSPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 824
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A1B6IB91_9HEMI (PROCN domain-containing protein (Fragment) n=7 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6IB91_9HEMI)

HSP 1 Score: 496 bits (1278), Expect = 4.510e-172
Identity = 227/249 (91.16%), Postives = 242/249 (97.19%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKL++DSHVQYRL NVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FF+RG+ PL+ERWLGNLL+RQFEGRHSKG+AK+VTKQRVESHFDLELRA+VMHDI+DMMPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVK KADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLK
Sbjct:  319 REILRLTKLIIDSHVQYRLNNVDAFQLADGLQYVFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLK 567
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A2R7WFD6_ONCFA (PROCN domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WFD6_ONCFA)

HSP 1 Score: 487 bits (1254), Expect = 5.890e-172
Identity = 224/249 (89.96%), Postives = 239/249 (95.98%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKL++DSHVQYRL NVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCG WAPGWRVW+FF+RG+ PL+ERWLGNLL+RQFEGRHSKG+AK+VTKQRVESHFDLELRA+VMHDI+DMMPEG+K NK+RTILQHLSEAWR WKAN PWKVPGLP PIENMILRYVK KADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLK
Sbjct:  113 REILRLTKLIIDSHVQYRLNNVDAFQLADGLQYVFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGIWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRNWKANTPWKVPGLPIPIENMILRYVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLK 361
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BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A151H3C0_TOXGO (Pre-mRNA processing splicing factor PRP8 (Fragment) n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A151H3C0_TOXGO)

HSP 1 Score: 497 bits (1279), Expect = 1.220e-171
Identity = 233/249 (93.57%), Postives = 242/249 (97.19%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKLVVDSHVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKYRLMRQ+RMCKDLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRGV+PL+ERWLGNLLARQFEGR SKG+AK+VTKQRVESHFDLELRAAVMHDILD MPEGVKANK+RTILQHLSEAWRCWKANIPWKVPGLPAP+ENMILRYVK KADWWTN A+YNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQH YLK
Sbjct:  205 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPVWRVWLFFLRGVLPLLERWLGNLLARQFEGRVSKGVAKTVTKQRVESHFDLELRAAVMHDILDTMPEGVKANKARTILQHLSEAWRCWKANIPWKVPGLPAPVENMILRYVKMKADWWTNAAYYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHAYLK 453
[Close]
BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Match: A0A7S0JFI6_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0JFI6_9EUKA)

HSP 1 Score: 506 bits (1302), Expect = 1.830e-171
Identity = 237/249 (95.18%), Postives = 245/249 (98.39%), Query Frame = 1 
Query:    1 REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 747
            REILRLTKLVVDSHVQYRLGNVDA+QLADGLQY FAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGR SKGIAK+VTKQRVESH+DLELRAAVMHDILDMMPEGVK NKSRTILQHLSEAWRCWKANIPWKVPG+PAPIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTV KKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  689 REILRLTKLVVDSHVQYRLGNVDAYQLADGLQYIFAHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRSSKGIAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKTNKSRTILQHLSEAWRCWKANIPWKVPGMPAPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVTKKNLGRLTRLWLKAEQERQHNYLK 937
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig666.15389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V125_9STRA7.380e-17794.78PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A1D6NUI8_MAIZE7.800e-17691.57Pre-mRNA-processing-splicing factor 8A n=2 Tax=Zea... [more]
A0A7S0V611_9CRYP5.710e-17493.57Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0F341_9EUKA3.690e-17395.58Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7L3HCZ3_9PASS5.500e-17393.57PRP8 factor (Fragment) n=4 Tax=Neognathae TaxID=88... [more]
A0A3L6VBU4_9STRA2.450e-17294.78Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1B6IB91_9HEMI4.510e-17291.16PROCN domain-containing protein (Fragment) n=7 Tax... [more]
A0A2R7WFD6_ONCFA5.890e-17289.96PROCN domain-containing protein n=1 Tax=Oncopeltus... [more]
A0A151H3C0_TOXGO1.220e-17193.57Pre-mRNA processing splicing factor PRP8 (Fragment... [more]
A0A7S0JFI6_9EUKA1.830e-17195.18Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig666contigL-elsbetiae_contig666:31739..34855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score514.2
Seed ortholog evalue3.3e-143
Seed eggNOG ortholog65071.PYU1_T005528
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGs1MCGD@121069,COG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons5
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig666.15389.1prot_L-elsbetiae_contig666.15389.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig666 31739..34855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.2285237-CDS-L-elsbetiae_contig666:31738..319151622816737.2285237-CDS-L-elsbetiae_contig666:31738..31915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 31739..31915 +
1691683776.080082-CDS-L-elsbetiae_contig666:31738..319151691683776.080082-CDS-L-elsbetiae_contig666:31738..31915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 31739..31915 +
1622816737.2398791-CDS-L-elsbetiae_contig666:32714..328841622816737.2398791-CDS-L-elsbetiae_contig666:32714..32884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 32715..32884 +
1691683776.0917706-CDS-L-elsbetiae_contig666:32714..328841691683776.0917706-CDS-L-elsbetiae_contig666:32714..32884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 32715..32884 +
1622816737.2526357-CDS-L-elsbetiae_contig666:33541..336861622816737.2526357-CDS-L-elsbetiae_contig666:33541..33686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 33542..33686 +
1691683776.1014013-CDS-L-elsbetiae_contig666:33541..336861691683776.1014013-CDS-L-elsbetiae_contig666:33541..33686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 33542..33686 +
1622816737.2654386-CDS-L-elsbetiae_contig666:33992..340971622816737.2654386-CDS-L-elsbetiae_contig666:33992..34097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 33993..34097 +
1691683776.110888-CDS-L-elsbetiae_contig666:33992..340971691683776.110888-CDS-L-elsbetiae_contig666:33992..34097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 33993..34097 +
1622816737.2752116-CDS-L-elsbetiae_contig666:34705..348551622816737.2752116-CDS-L-elsbetiae_contig666:34705..34855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 34706..34855 +
1691683776.1222076-CDS-L-elsbetiae_contig666:34705..348551691683776.1222076-CDS-L-elsbetiae_contig666:34705..34855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 34706..34855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig666.15389.1

>prot_L-elsbetiae_contig666.15389.1 ID=prot_L-elsbetiae_contig666.15389.1|Name=mRNA_L-elsbetiae_contig666.15389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
REILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYR
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPL
IERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMM
PEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKA
DWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
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mRNA from alignment at L-elsbetiae_contig666:31739..34855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig666.15389.1 ID=mRNA_L-elsbetiae_contig666.15389.1|Name=mRNA_L-elsbetiae_contig666.15389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3117bp|location=Sequence derived from alignment at L-elsbetiae_contig666:31739..34855+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGATCCTGCGGCTGACGAAGCTGGTGGTGGACTCGCACGTGCAGTA
CCGCCTCGGCAACGTGGACGCCTTCCAGCTCGCCGACGGGCTGCAGTACG
CCTTCGCCCACGTGGGGCAGCTGACCGGCATGTACCGGTACAAGTACCGC
CTCATGCGCCAGATCCGCATGTGCAAGGTGCGGGAGTGATTGCTTTGCTT
GCGTGCGACCGTGCGATCGATCAGTTTGGGGGTACGGTACGGTATGGTAC
GGTAAGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCAC
GGCACGGCACGGCACGGCACGGCACGGTACGGTACGGTACGGTACGGTAC
GGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTGC
GGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGCCAGACGGCGGGA
AGTGCCACATCTGTCCGGGGTTGTACATAGCCAAGAGGTTAAGTAGGTAA
CCCCAGATCTTCATTTAAAGATTGGTATCTCGTGTGTTTCGTGTTGGTTC
CTTGTGTGTTGCATGTGTTTGTGCGCGTCTGGAGTGCGTCTCGGTCCTTG
GGAAGGGTTGCTAATGCCCTTGGGGAGGTTTGATGATTAAAGTATGAGAG
GAGTGTGTTGCTATTTGGTGCTGGGCCACAGCGGCGCTCGAACCCACTAG
CAGCAGTACCGCAACAAGTTTTTATTTTACGTTGATACGAGGACGCCTCT
GAAGATGGCAGCTACTACATGGGACAGCCCTCCCCCCCCCCCCCTCCTTT
TGCGCTCTCAACGAGTCATACCCTAGCAATCACCGACCCGCCCGAACCCT
TCAACAACCCCCTCCTCATCTCTGTGTGTGCACCCATCGTCTCCCTCTCC
GCCCTTCCTTCTCACGGACCTCTTGAACTTTGTCACGCGCACGCGCACAC
ACACACGCACACGCACACAACCGCAGGACTTGAAGCACCTGATCTACTAC
CGCTTCAACACGGGGCCGGTGGGCAAGGGTCCCGGTTGCGGCTTCTGGGC
GCCGGGGTGGCGGGTCTGGATCTTCTTCCTCCGCGGGGTGGTGCCGCTCA
TCGAGCGCTGGCTGGGCAACCTGCTGGCCAGGCAGTTCGAGGGCAGGTGA
GAGGGGGGGGCACGGACGGAGGAACCAAGGAACGGAGGGGGGGGGGTAGA
GTCGATGACGGCGGCGCCGTCAGGGGAGGGAGGTTTTCACGTTAGCTGTA
GTAATCTCAGAAAATACCGACCCGTGGTGGTGGTCGCAAAAGTGCCAGAG
CCATCGGAAGATCCGAAAAACAGCAGGGGTAAAAAACCTGCTGTGTATTC
GTTCAGAGCAACACGCTTGAGGAAGGTAGGAAGGAGTCTTGGCTGGGAGA
CCGAGAATAGTCTCGAGGTTTTTTCTCTATTACAAGCAACGTTTGTCGTG
AGAGGTGGGCGTGTGTGGAGACAGCGAGACGGGGGAGACGTATTTCTGTA
TGTGCGGGGGGCGGGGGCGGGAGAGCGCCTTTGAGCTTGGGCATGCCCCC
CCCCCTCGCGCGCTTTCCCACTTTCCCTCGAGTGCACAATATACTCGTAA
CCCGGTTGCTCTCTCACTCTAATTCAGCCTGTATGTATCGGAAAAAAAAA
AAACGCACACACACAGGACTACATAATTGTTTTTCGTTTTGTTTTTCCCG
GTATTTTTGGTTCTGTGTCGTGCTCTGCTCCGGCCCTTTACTCACCTCAC
CGCCTCTCTGTAAACGGCCGATTTATTTTGTTCTTTTGCTCCTCCTCTCG
TAGACACTCCAAGGGTATCGCCAAGTCGGTGACGAAGCAGAGGGTGGAGT
CTCACTTCGACCTGGAGCTGAGGGCGGCGGTGATGCACGACATCCTGGAC
ATGATGCCCGAGGGTGTCAAGGCGAACAAGTCGAGGACCATCCTGCAGGT
GCAGCAGTGTACCCGCAAGCACACATGTACGGGTTGTCCTTGTCGTGTCT
GGACACGACAGCGAGCGAGCCCCCAGCCTTTGCTGCCGCGGGGTAGGCGA
GGCCAGGTCGTATAAATATGCGTCGAACGGATTGATAGATTTGACGGAAG
TGTGTGTGTGTGTGTGTGTATGTGTGTGTGTATGCATATCCTACGTATGT
ACTCTTTCTTATACATAAATACTCTCGTGTAAAAACCCTTCTGAGTTATA
TTTTTTTATGGTGATTGATTGCCCCGCCGAACGTCACCTTGAAATCGCCT
TCAGCACCTGAGCGAGGCGTGGCGCTGCTGGAAGGCCAACATCCCCTGGA
AGGTGCCGGGGCTGCCCGCTCCCATCGAGAACATGATCCTCCGCTACGTC
AAGGCCAAGGTATTGTGTGTACATCTGTACATACCATGCATGCTTTATAC
CACATTCAGGTGCGCCAACACGAAGTGGCTCCCACTGTCTGTGCCTCTGT
GCCTCTCTCTCTCTCTCTCGGTCTGTTTCTGTCTCTGTCTGTCTCTCTCT
CTCTCTCTCTCTCTGTCTGTCTCTCTGTCTCTCTGCCTCTGTCTCTGTCT
CTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTTTGTCTCTGTCT
CTCGCTGTCTCTATTGGCTCCCCCCTCCCTCCCTCTTTCTCTAGTCCCCC
CCCCCCCCCCATCTGAGTTTTATAGGTGTATTTATGCAGGAACAGGAAGA
GGCACAGTCACGGTTACCATTACAGGGGCTACTTAAGAAGCTGTCACCTG
TGCGCCGCTCGTTCGCAGGGAGGGGATACATTTTCGTGTTGTCCCGAACT
TTTTATAGCGGGCAAGTGTGCGCTCATGATCGGCACGTGTTGTACGTATA
CATTACGTGTTTTGTTTGTTTGTTTGTTTGTTTGTTGCTTGTGCGCTCAC
CGCTGGCTGCACTGGCTGCTTTACCGCGCGGCGACGTTTGGTACACGCCG
CCGCCTACACACCACAGGCGGACTGGTGGACCAACATCGCGCACTACAAC
CGCGAGCGCATCAGGCGCGGAGCGACCGTGGACAAGACCGTGTGCAAGAA
GAACCTCGGCAGGCTGACGCGCCTGTGGCTCAAGGCCGAGCAGGAGAGGC
AGCACAACTACCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig666:31739..34855+

>mRNA_L-elsbetiae_contig666.15389.1 ID=mRNA_L-elsbetiae_contig666.15389.1|Name=mRNA_L-elsbetiae_contig666.15389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig666:31739..34855+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGATCCTGCGGCTGACGAAGCTGGTGGTGGACTCGCACGTGCAGTA
CCGCCTCGGCAACGTGGACGCCTTCCAGCTCGCCGACGGGCTGCAGTACG
CCTTCGCCCACGTGGGGCAGCTGACCGGCATGTACCGGTACAAGTACCGC
CTCATGCGCCAGATCCGCATGTGCAAGAGGGAGATCCTGCGGCTGACGAA
GCTGGTGGTGGACTCGCACGTGCAGTACCGCCTCGGCAACGTGGACGCCT
TCCAGCTCGCCGACGGGCTGCAGTACGCCTTCGCCCACGTGGGGCAGCTG
ACCGGCATGTACCGGTACAAGTACCGCCTCATGCGCCAGATCCGCATGTG
CAAGGACTTGAAGCACCTGATCTACTACCGCTTCAACACGGGGCCGGTGG
GCAAGGGTCCCGGTTGCGGCTTCTGGGCGCCGGGGTGGCGGGTCTGGATC
TTCTTCCTCCGCGGGGTGGTGCCGCTCATCGAGCGCTGGCTGGGCAACCT
GCTGGCCAGGCAGTTCGAGGGCAGGACTTGAAGCACCTGATCTACTACCG
CTTCAACACGGGGCCGGTGGGCAAGGGTCCCGGTTGCGGCTTCTGGGCGC
CGGGGTGGCGGGTCTGGATCTTCTTCCTCCGCGGGGTGGTGCCGCTCATC
GAGCGCTGGCTGGGCAACCTGCTGGCCAGGCAGTTCGAGGGCAGACACTC
CAAGGGTATCGCCAAGTCGGTGACGAAGCAGAGGGTGGAGTCTCACTTCG
ACCTGGAGCTGAGGGCGGCGGTGATGCACGACATCCTGGACATGATGCCC
GAGGGTGTCAAGGCGAACAAGTCGAGGACCATCCTGCAGACACTCCAAGG
GTATCGCCAAGTCGGTGACGAAGCAGAGGGTGGAGTCTCACTTCGACCTG
GAGCTGAGGGCGGCGGTGATGCACGACATCCTGGACATGATGCCCGAGGG
TGTCAAGGCGAACAAGTCGAGGACCATCCTGCAGCACCTGAGCGAGGCGT
GGCGCTGCTGGAAGGCCAACATCCCCTGGAAGGTGCCGGGGCTGCCCGCT
CCCATCGAGAACATGATCCTCCGCTACGTCAAGGCCAAGCACCTGAGCGA
GGCGTGGCGCTGCTGGAAGGCCAACATCCCCTGGAAGGTGCCGGGGCTGC
CCGCTCCCATCGAGAACATGATCCTCCGCTACGTCAAGGCCAAGGCGGAC
TGGTGGACCAACATCGCGCACTACAACCGCGAGCGCATCAGGCGCGGAGC
GACCGTGGACAAGACCGTGTGCAAGAAGAACCTCGGCAGGCTGACGCGCC
TGTGGCTCAAGGCCGAGCAGGAGAGGCAGCACAACTACCTCAAGGCGGAC
TGGTGGACCAACATCGCGCACTACAACCGCGAGCGCATCAGGCGCGGAGC
GACCGTGGACAAGACCGTGTGCAAGAAGAACCTCGGCAGGCTGACGCGCC
TGTGGCTCAAGGCCGAGCAGGAGAGGCAGCACAACTACCTCAAG
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