mRNA_L-elsbetiae_contig666.15386.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig666.15386.1
Unique NamemRNA_L-elsbetiae_contig666.15386.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 2.560e-97
Identity = 134/142 (94.37%), Postives = 140/142 (98.59%), Query Frame = 1
Query:    1 QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDMEWRRRNGIEQPIHNRRRTPPKEKW 426
            QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHG+RVLPYR HS+HDIKEKDDRWFSSGRWASAYYDASPAVAKKME+QLWAEDKVIRVSTRRP+TKMDRIASTHERSNPWDMEWR RNGIEQP+HNRRRTPPK+KW
Sbjct:    6 QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.130e-21
Identity = 44/118 (37.29%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 357
            + T + RT P  LT ++RR    +LE+GG+VR V NHG++ L YR  +R  +   ++R+ + GRW S Y+DA P    K++  L  +D  +R +T +P  KM+ I++ H+ +NPW+ +
Sbjct:    7 VFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.180e-17
Identity = 38/115 (33.04%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            ++T +   +   LTN  +  +++++E GG+VR+V NHGIR LP+R  +R+  KE  +R++  GR+ S +YDASP    ++E ++  +D+++R +  +   K+  I + +E+ NP+
Sbjct:    7 VLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKE-GNRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.110e-16
Identity = 38/105 (36.19%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   34 TDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            T LT + +  ++ ++E GG+VR+V NHGIR LP+R  +++  KE  +R++  GR+ S +YDASP V  K+E ++  +D+++R +  +   K+  I    E+ NP+
Sbjct:   17 TSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKE-GNRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.310e-16
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   40 LTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            LT++ +  +  ++E GG+VRSV NHGIR L +R  +RH  ++   R F  GR+ S YYD+SPA+ +++ + L  ++ V+R +  R   K+D I + +++ NP+
Sbjct:   19 LTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRD-GTRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A1E7FMF6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-15
Identity = 37/115 (32.17%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            +++ +  T+   LT + ++ +  ++E GG+VRS+ NHG+R  P+R  +++       R++  GR+ S YYD++P   K++E  L   D+V+RV+  +  +K+D I   HE+ NP+
Sbjct:    7 VLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A448Z259_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z259_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.940e-15
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   52 FRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
             +  +  ++E GG++RS+ NHG+R  P+R  +++       R++  GR+ S YYDA+PA  KK+E  L   D+V+RV+  +  +K+D I   H++ NP+
Sbjct:    1 MKEVSLKVVENGGIIRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISVYYDANPATLKKVENILNMNDQVLRVTHLKSRSKLDWINYRHDK-NPY 98          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.890e-15
Identity = 37/104 (35.58%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   37 DLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            +LTN+ +  +  ++E GG+VRSV NHGIR LP+R  +++  KE  +R++  GR+ S +YDASP   ++++  L  +++V+R +  +P  K+      +E+ NP+
Sbjct:   18 NLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKE-GNRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 4.530e-15
Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 348
            ++T +  T+   LT++ +  +  I+E GG+VRS+ NHGIR LP+R  S++  +E  +R++  GR+ S +YD++P  AK++E  L   ++++R +  R S + + +    E  NP+
Sbjct:   45 LMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADRE-GNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158          
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.260e-13
Identity = 34/118 (28.81%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSRHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 357
            ++T +   +  +LT + +  +  I+  GG+VRS+ NHG+R LP+R  +++  +E  +R++  GR+ S +YDASP + +++E  L  +++++R +  +   K   + +  E  NP+  E
Sbjct:    7 LMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADRE-GNRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig666.15386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LLJ6_ECTSI2.560e-9794.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0N7_9STRA1.130e-2137.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S8YXD6_9STRA2.180e-1733.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2IGM9_9STRA1.110e-1636.19Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YM88_9STRA6.310e-1636.89Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FMF6_9STRA1.590e-1532.17Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448Z259_9STRA1.940e-1535.35Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6T7JZ88_9STRA2.890e-1535.58Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
K0TLA5_THAOC4.530e-1533.04Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2MAY0_9STRA2.260e-1328.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig666contigL-elsbetiae_contig666:5939..6698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.8
Seed ortholog evalue1.1e-74
Seed eggNOG ortholog2880.D8LLJ6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein S6
EggNOG OGs2E67R@1,2SCYQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTranslation elongation factor EF1B/ribosomal protein S6
Ec32 orthologEc-04_005610.1
Exons2
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.9067476-CDS-L-elsbetiae_contig666:5938..61841622816736.9067476-CDS-L-elsbetiae_contig666:5938..6184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 5939..6184 +
1691683775.9010856-CDS-L-elsbetiae_contig666:5938..61841691683775.9010856-CDS-L-elsbetiae_contig666:5938..6184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 5939..6184 +
1622816736.9229045-CDS-L-elsbetiae_contig666:6515..66981622816736.9229045-CDS-L-elsbetiae_contig666:6515..6698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 6516..6698 +
1691683775.9118083-CDS-L-elsbetiae_contig666:6515..66981691683775.9118083-CDS-L-elsbetiae_contig666:6515..6698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig666 6516..6698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig666.15386.1prot_L-elsbetiae_contig666.15386.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig666 5939..6698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig666.15386.1

>prot_L-elsbetiae_contig666.15386.1 ID=prot_L-elsbetiae_contig666.15386.1|Name=mRNA_L-elsbetiae_contig666.15386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGIRVLPYRIHSR
HDIKEKDDRWFSSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPS
TKMDRIASTHERSNPWDMEWRRRNGIEQPIHNRRRTPPKEKW*
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mRNA from alignment at L-elsbetiae_contig666:5939..6698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig666.15386.1 ID=mRNA_L-elsbetiae_contig666.15386.1|Name=mRNA_L-elsbetiae_contig666.15386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=760bp|location=Sequence derived from alignment at L-elsbetiae_contig666:5939..6698+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCGTTACGCTGCGGCCGAGGACGAACCCTACCGACCTCACCAACAT CTTCCGGCGGGCAGCCGCCGTCATCCTCGAGGAGGGCGGGGTCGTGAGAT CGGTGGCCAACCACGGGATCAGGGTGCTGCCGTACCGCATCCACAGCAGG CACGACATCAAGGAGAAGGACGACCGCTGGTTCTCTTCGGGCCGCTGGGC CAGCGCCTACTACGATGCCAGCCCCGCCGTGGCGAAGAAGATGGAGGTGG GTGGGTGGGTGGGTGGGTGGCGTGAAGTGGGGTCGGCGCCGGCTGTGGCG AGTGCAAGAGCGGGAGACATTCAGACGTTTTCGAGAAATGTGCACGGGCG AGACGCATGCGACCAGCCAGCCGTATAAATACATGAGTGGTGCGTAGTTT TTGTTTGCAATATAAAAGGAGTGGTAGACTATATGTTACCCCCATGCCCC CTCTCGTCCGCTCCCAATACCCGTGATTTCTACCACCACCCCACCACCGC ATTGTGCCTAAAAGCGGACGCCCTTTTGCTGTCGTTGGCACCTTTCTTGG CTATTTTCCCGATACTGGTCTTGATAGCAACAACTGTGGGCGGAGGACAA GGTCATCCGAGTCTCCACCAGGCGCCCGTCGACCAAGATGGACCGGATAG CATCCACCCACGAACGGTCAAACCCTTGGGATATGGAATGGCGGAGACGC AACGGAATCGAGCAGCCCATTCACAACCGACGCCGCACACCACCGAAGGA AAAGTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig666:5939..6698+

>mRNA_L-elsbetiae_contig666.15386.1 ID=mRNA_L-elsbetiae_contig666.15386.1|Name=mRNA_L-elsbetiae_contig666.15386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig666:5939..6698+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCGTTACGCTGCGGCCGAGGACGAACCCTACCGACCTCACCAACAT
CTTCCGGCGGGCAGCCGCCGTCATCCTCGAGGAGGGCGGGGTCGTGAGAT
CGGTGGCCAACCACGGGATCAGGGTGCTGCCGTACCGCATCCACAGCAGG
CACGACATCAAGGAGAAGGACGACCGCTGGTTCTCTTCGGGCCGCTGGGC
CAGCGCCTACTACGATGCCAGCCCCGCCGTGGCGAAGAAGATGGAGCAGA
TCGTTACGCTGCGGCCGAGGACGAACCCTACCGACCTCACCAACATCTTC
CGGCGGGCAGCCGCCGTCATCCTCGAGGAGGGCGGGGTCGTGAGATCGGT
GGCCAACCACGGGATCAGGGTGCTGCCGTACCGCATCCACAGCAGGCACG
ACATCAAGGAGAAGGACGACCGCTGGTTCTCTTCGGGCCGCTGGGCCAGC
GCCTACTACGATGCCAGCCCCGCCGTGGCGAAGAAGATGGAGCAACAACT
GTGGGCGGAGGACAAGGTCATCCGAGTCTCCACCAGGCGCCCGTCGACCA
AGATGGACCGGATAGCATCCACCCACGAACGGTCAAACCCTTGGGATATG
GAATGGCGGAGACGCAACGGAATCGAGCAGCCCATTCACAACCGACGCCG
CACACCACCGAAGGAAAAGTGGTAGCAACAACTGTGGGCGGAGGACAAGG
TCATCCGAGTCTCCACCAGGCGCCCGTCGACCAAGATGGACCGGATAGCA
TCCACCCACGAACGGTCAAACCCTTGGGATATGGAATGGCGGAGACGCAA
CGGAATCGAGCAGCCCATTCACAACCGACGCCGCACACCACCGAAGGAAA
AGTGGTAG
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