mRNA_L-elsbetiae_contig6653.15383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6653.15383.1
Unique NamemRNA_L-elsbetiae_contig6653.15383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6653.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6653contigL-elsbetiae_contig6653:181..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.6808898-CDS-L-elsbetiae_contig6653:180..5011622816736.6808898-CDS-L-elsbetiae_contig6653:180..501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6653 181..501 +
1691683775.7693105-CDS-L-elsbetiae_contig6653:180..5011691683775.7693105-CDS-L-elsbetiae_contig6653:180..501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6653 181..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6653.15383.1prot_L-elsbetiae_contig6653.15383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6653 181..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6653.15383.1

>prot_L-elsbetiae_contig6653.15383.1 ID=prot_L-elsbetiae_contig6653.15383.1|Name=mRNA_L-elsbetiae_contig6653.15383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
PCKACRPTSSVILQPDGQKVPPLSWHWSVEICDYRGAQKLRWFAHGSLLV
ASHSSYREEREREREPTRERAGSETEGNKIAARLIPDHSLSSQSRSRRNT
SLPPFVP
back to top

mRNA from alignment at L-elsbetiae_contig6653:181..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6653.15383.1 ID=mRNA_L-elsbetiae_contig6653.15383.1|Name=mRNA_L-elsbetiae_contig6653.15383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=322bp|location=Sequence derived from alignment at L-elsbetiae_contig6653:181..502+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTGCAAGGCTTGTCGGCCGACAAGCTCTGTCATCTTGCAACCTGACGG
CCAAAAAGTGCCCCCTCTATCGTGGCATTGGTCAGTAGAGATATGTGACT
ATAGAGGTGCCCAAAAGTTACGGTGGTTTGCGCACGGCAGCTTGCTTGTG
GCATCGCACAGTTCGTACAGGGAAGAGAGAGAGAGAGAAAGAGAGCCGAC
GAGAGAGAGGGCCGGTTCAGAGACAGAGGGCAACAAAATTGCGGCACGAC
TTATCCCAGACCACAGCCTCTCATCGCAGTCTCGATCAAGACGCAACACA
AGCCTCCCGCCTTTTGTTCCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6653:181..502+

>mRNA_L-elsbetiae_contig6653.15383.1 ID=mRNA_L-elsbetiae_contig6653.15383.1|Name=mRNA_L-elsbetiae_contig6653.15383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6653:181..502+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTGCAAGGCTTGTCGGCCGACAAGCTCTGTCATCTTGCAACCTGACGG
CCAAAAAGTGCCCCCTCTATCGTGGCATTGGTCAGTAGAGATATGTGACT
ATAGAGGTGCCCAAAAGTTACGGTGGTTTGCGCACGGCAGCTTGCTTGTG
GCATCGCACAGTTCGTACAGGGAAGAGAGAGAGAGAGAAAGAGAGCCGAC
GAGAGAGAGGGCCGGTTCAGAGACAGAGGGCAACAAAATTGCGGCACGAC
TTATCCCAGACCACAGCCTCTCATCGCAGTCTCGATCAAGACGCAACACA
AGCCTCCCGCCTTTTGTTCCGCCCTGCAAGGCTTGTCGGCCGACAAGCTC
TGTCATCTTGCAACCTGACGGCCAAAAAGTGCCCCCTCTATCGTGGCATT
GGTCAGTAGAGATATGTGACTATAGAGGTGCCCAAAAGTTACGGTGGTTT
GCGCACGGCAGCTTGCTTGTGGCATCGCACAGTTCGTACAGGGAAGAGAG
AGAGAGAGAAAGAGAGCCGACGAGAGAGAGGGCCGGTTCAGAGACAGAGG
GCAACAAAATTGCGGCACGACTTATCCCAGACCACAGCCTCTCATCGCAG
TCTCGATCAAGACGCAACACAAGCCTCCCGCCTTTTGTTCCG
back to top