mRNA_L-elsbetiae_contig6651.15382.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6651.15382.1
Unique NamemRNA_L-elsbetiae_contig6651.15382.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6651.15382.1 vs. uniprot
Match: A0A6H5KWG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.530e-31
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 2 
Query:  230 EERQHTIDLQRSSRGMSNSELRTILQHRDLRMERYLSVPDHHPRSSS--QEYGQTDREDSESEDTGERSDRSVSIDVRRTDAPHFAVGSASPEERERG-----LTGTPKRQGFTFSQSRR 568
            EERQHTIDLQRSSRG+SN++   ++Q R+LR++R LS+P+ HPRSSS  QEYG TD E  E +D GERSDRS SI+VRRTDA HFAV   +P++  RG       G P+RQGF F   RR
Sbjct:   69 EERQHTIDLQRSSRGLSNADEMALVQQRELRIQRNLSLPERHPRSSSSSQEYGVTDHE--EDDDDGERSDRSDSIEVRRTDAHHFAVCGINPDQAARGGGECTPQGMPRRQGFKFGNGRR 186
[Close]
BLAST of mRNA_L-elsbetiae_contig6651.15382.1 vs. uniprot
Match: D7FVV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.040e-29
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 2 
Query:  233 ERQHTIDLQRSSRGMSNSELRTILQHRDLRMERYLSVPDHHPRSSSQ--EYGQTDREDSESEDTGERSDRSVSIDVRRTDAPHFAVGSASPEERERG-----LTGTPKRQGFTFSQSRR 568
            ERQHTIDLQRSSRG+SN++   ++Q R+LRM+R LS+P+ HPRSSS   EYG TD E  E ED GERSDRS SI+VRRTD  HFAV   SP++   G       G P+RQGF F   RR
Sbjct:   80 ERQHTIDLQRSSRGLSNADEMALVQQRELRMQRNLSLPERHPRSSSSSVEYGVTDHE--EDEDDGERSDRSDSIEVRRTDTHHFAVCGISPDQTTTGGGECTPQGMPRRQGFKFGHGRR 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6651.15382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWG8_9PHAE2.530e-3159.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV3_ECTSI1.040e-2958.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6651contigL-elsbetiae_contig6651:570..2125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size598
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.63589-CDS-L-elsbetiae_contig6651:569..10191622816736.63589-CDS-L-elsbetiae_contig6651:569..1019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6651 570..1019 +
1691683775.74751-CDS-L-elsbetiae_contig6651:569..10191691683775.74751-CDS-L-elsbetiae_contig6651:569..1019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6651 570..1019 +
1622816736.6475117-CDS-L-elsbetiae_contig6651:1979..21231622816736.6475117-CDS-L-elsbetiae_contig6651:1979..2123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6651 1980..2123 +
1691683775.7575545-CDS-L-elsbetiae_contig6651:1979..21231691683775.7575545-CDS-L-elsbetiae_contig6651:1979..2123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6651 1980..2123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6651.15382.1prot_L-elsbetiae_contig6651.15382.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6651 570..2123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6651.15382.1

>prot_L-elsbetiae_contig6651.15382.1 ID=prot_L-elsbetiae_contig6651.15382.1|Name=mRNA_L-elsbetiae_contig6651.15382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
GTPLFWQKRSACCSATSTSSTSSRRSSCSRSGGATATAAAPAPAEPATLP
DRRGRGGRGGGGGGGGGRRRRCRRGKRGKAAHDRPAAVVARDVQLRAADH
PPAPRPAHGEVPVRARPPSALEQPGVRADGPRGLGVGGHGGKERPLSQHR
REKDRRPAFRGGKRQPRGARARADGHAQKTGIHVFPEPPAAIVTASMH
back to top

mRNA from alignment at L-elsbetiae_contig6651:570..2125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6651.15382.1 ID=mRNA_L-elsbetiae_contig6651.15382.1|Name=mRNA_L-elsbetiae_contig6651.15382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1556bp|location=Sequence derived from alignment at L-elsbetiae_contig6651:570..2125+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACGCCTCTTTTTTGGCAGAAAAGGTCCGCTTGCTGTTCAGCCACCAG
CACCAGCAGCACCAGCAGCAGGCGGTCGTCATGCTCCCGGTCGGGAGGAG
CAACGGCCACAGCAGCAGCACCAGCACCAGCAGAGCCAGCAACCTTGCCA
GATAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGACGGCGGCGGTGTCGACGGGGCAAGAGAGGAAAGGCAGCACACGATC
GACCTGCAGCGGTCGTCGCGAGGGATGTCCAACTCCGAGCTGCGGACCAT
CCTCCAGCACCGCGACCTGCGCATGGAGAGGTACCTGTCCGTGCCCGACC
ACCATCCGCGCTCGAGCAGCCAGGAGTACGGGCAGACGGACCGAGAGGAC
TCGGAGTCGGAGGACACGGGGGAAAGGAGCGACCGCTCAGTCAGCATCGA
GTGAGTGCCAGCAGTAGCCTCCGCGCAGGTGTTATGTACTGGAAGAAATC
ATGTGGGATAAAGTATGGAAGCGGCTAATGGGTGGTCGGTTTGGGGTTAG
TCAGGGTTAGGGTTTGGGTTTGGGTTACAGAACCCCTGTCTATTATTTCC
TACAATATAGATACAATAAACAGGAATTCTTCGTGAAGGCAGAGTTCTAG
TAGCCTTCGCAGGTTTTTACTGGAAGAAATCATATGGGATAAAGTATGGA
AATGGCAAATGGGGGGTCGGTTTGGGGTTAGGGTTAGGGTTACGGAGCCC
CTGTCTGTTATTCCCTGCTTGAATATGGAGAGGAATTCTTCGCAAGGCTG
GTCTCCGTGAGAGCAGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCACTAT
TTAGCTAATGTAGTAGAGGGGGGCAGCAACAGAGCCTCGAGGTGGTGGAC
GTGTGTGCCTGAAACAAATGGACAACGTGCCGTCGTTTGAAGAAGAGACA
AAACAAATTGAGATTTTGAAACGCCGCCGTGGAAAACCAAAGCAAATAAA
CACGCCCACACGAGGCTTTGCTCTTACAATATCAGCATTTCTTTACTTTG
GTTTTTATATATACTACTACTACTGTCACAACTCTCTTTGCAGTCCGTCG
ATACCATCTCAGTCAGATTCTACCTACTCACGTTTGGGGTTTGTTTTGAC
TTGACCGTATGCCACATACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCCCCTCTTTTTTTTTCTCTCCTTCCCCGGGCGGAGAGGACGGCCCCCC
CGCCCCCTGCGGGGGNNNNNNNNNNTCGTCGCCTCCCCTCTCCTCGCTAT
TCTCCCCCCCCCCTTTGGGGTTTGTTTTTGTTGTGTCCCCCTCCCCCACC
CCCCCCCCCCCCCCCCCCCCCTGCGATGCTACATCTGCTGTGTTCTTGCC
TGTATCACAGCGTGAGAAGGACCGACGCCCCGCATTTCGCGGTGGGAAGC
GCCAGCCCAGAGGAGCGAGAGCGAGGGCTGACGGGCACGCCCAAAAGACA
GGGATTCACGTTTTCCCAGAGCCGCCGGCGGCGATTGTGACTGCTTCCAT
GCATTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6651:570..2125+

>mRNA_L-elsbetiae_contig6651.15382.1 ID=mRNA_L-elsbetiae_contig6651.15382.1|Name=mRNA_L-elsbetiae_contig6651.15382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig6651:570..2125+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACGCCTCTTTTTTGGCAGAAAAGGTCCGCTTGCTGTTCAGCCACCAG
CACCAGCAGCACCAGCAGCAGGCGGTCGTCATGCTCCCGGTCGGGAGGAG
CAACGGCCACAGCAGCAGCACCAGCACCAGCAGAGCCAGCAACCTTGCCA
GATAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGACGGCGGCGGTGTCGACGGGGCAAGAGAGGAAAGGCAGCACACGATC
GACCTGCAGCGGTCGTCGCGAGGGATGTCCAACTCCGAGCTGCGGACCAT
CCTCCAGCACCGCGACCTGCGCATGGAGAGGTACCTGTCCGTGCCCGACC
ACCATCCGCGCTCGAGCAGCCAGGAGTACGGGCAGACGGACCGAGAGGAC
TCGGAGTCGGAGGACACGGGGGAAAGGAGCGACCGCTCAGTCAGCATCGA
GGTACGCCTCTTTTTTGGCAGAAAAGGTCCGCTTGCTGTTCAGCCACCAG
CACCAGCAGCACCAGCAGCAGGCGGTCGTCATGCTCCCGGTCGGGAGGAG
CAACGGCCACAGCAGCAGCACCAGCACCAGCAGAGCCAGCAACCTTGCCA
GATAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGACGGCGGCGGTGTCGACGGGGCAAGAGAGGAAAGGCAGCACACGATC
GACCTGCAGCGGTCGTCGCGAGGGATGTCCAACTCCGAGCTGCGGACCAT
CCTCCAGCACCGCGACCTGCGCATGGAGAGGTACCTGTCCGTGCCCGACC
ACCATCCGCGCTCGAGCAGCCAGGAGTACGGGCAGACGGACCGAGAGGAC
TCGGAGTCGGAGGACACGGGGGAAAGGAGCGACCGCTCAGTCAGCATCGA
CGTGAGAAGGACCGACGCCCCGCATTTCGCGGTGGGAAGCGCCAGCCCAG
AGGAGCGAGAGCGAGGGCTGACGGGCACGCCCAAAAGACAGGGATTCACG
TTTTCCCAGAGCCGCCGGCGGCGATTGTGACTGCTTCCATGCATCGTGAG
AAGGACCGACGCCCCGCATTTCGCGGTGGGAAGCGCCAGCCCAGAGGAGC
GAGAGCGAGGGCTGACGGGCACGCCCAAAAGACAGGGATTCACGTTTTCC
CAGAGCCGCCGGCGGCGATTGTGACTGCTTCCATGCAT
back to top