mRNA_L-elsbetiae_contig6650.15380.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6650.15380.1
Unique NamemRNA_L-elsbetiae_contig6650.15380.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: D8LNK8_ECTSI (Acyl-CoA oxidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK8_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 2.750e-127
Identity = 199/259 (76.83%), Postives = 221/259 (85.33%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAVGADCLYMTRLLNGEG-GKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            VR VIAK+AG+SLAKAATIATRYSI+RRQGFREG K   EHQ+LDYTIQMHRLLPL+A+A+GFHFAG  L  RLR LEREHVHGLPPL GG        DTLKQFHA SS LK +C+G+TAAGIEDCRKACGGHG+LQSSGLPE LG+YLQSCTVEGENHMLTQQVVRVLLQEL+AAR+  AVG DC YM+RL+ GEG G+RRCPV SPKGFRDSVVLEAALEHRAFRLL RVE+RLR + E G  + +EAWN AL+EV
Sbjct:  270 VRVVIAKDAGRSLAKAATIATRYSIVRRQGFREGSK---EHQVLDYTIQMHRLLPLIASAYGFHFAGVDLNLRLRRLEREHVHGLPPLAGGKGAG----DTLKQFHATSSCLKGLCSGLTAAGIEDCRKACGGHGYLQSSGLPELLGNYLQSCTVEGENHMLTQQVVRVLLQELAAARQSGAVGNDCAYMSRLVRGEGKGRRRCPVRSPKGFRDSVVLEAALEHRAFRLLVRVEARLRSEREAGS-SPAEAWNLALIEV 520          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A6H5K710_9PHAE (ACOX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K710_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 9.270e-106
Identity = 163/220 (74.09%), Postives = 184/220 (83.64%), Query Frame = 1
Query:  118 EHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAVGADCLYMTRLLNGEG-GKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            +  +LDYTIQMHRLLPL+A+A+GFHFAG  L  RLR LEREHVHGLPPL G         DTLKQFHA SS LK +C+G+TAAGIEDCRKACGGHG+LQSSGLPE LG+YLQSCTVEGENHMLTQQVVRVLLQEL+AAR+  AVG DC+YM+RL+ GEG G+RRCPV SPKGFRDSVVLEAALEHRAFRLL RVE RLR + E G  + +EAWN AL+E+
Sbjct:    5 DRSVLDYTIQMHRLLPLIASAYGFHFAGVDLKLRLRRLEREHVHGLPPLAGEKGAG----DTLKQFHATSSCLKGLCSGLTAAGIEDCRKACGGHGYLQSSGLPELLGTYLQSCTVEGENHMLTQQVVRVLLQELAAARQSGAVGNDCVYMSRLVRGEGKGRRRCPVRSPKGFRDSVVLEAALEHRAFRLLVRVEGRLRMEREAGS-SPAEAWNLALIEI 219          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A835YNL1_9STRA (Acyl-coenzyme A oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNL1_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.970e-61
Identity = 134/270 (49.63%), Postives = 166/270 (61.48%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFR-EGGKGP----------GEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAVGADCLYMTRLLNGEGGKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLR-RDAEEGGRTSSEAWNRALVEV 774
            VRA I + AG  LAKA TIA RYS LRRQGF  + G             GE Q+LDYT+QMHRLLPLVA A+ FH AG+++  RL  LE      +   PG           L +FHA+SS LKS+C+ VTA GIEDCRK CGGHG+L +SGLPE LG+YLQ+CTVEGENHMLTQQ V+ LL+ ++A   G   G DC +++R    E    RC   + +      VL AA EHRA RL+  V + +R R A +  R +  AWN ALVE+
Sbjct:  281 VRAYIVEQAGYCLAKATTIAVRYSALRRQGFAPQAGXXXXXXXXXXXXSGELQVLDYTVQMHRLLPLVATAYAFHSAGRAMQQRLARLE-----AMLDTPGVGA-------ALAEFHASSSGLKSLCSAVTADGIEDCRKCCGGHGYLAASGLPELLGTYLQNCTVEGENHMLTQQTVKHLLKAMAAGGGG---GEDCGHLSRWRPDE----RCCAATQEAMATMPVLMAAFEHRAARLVAGVGALMRARMAADAARDA--AWNGALVEM 529          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A7S4IAK9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IAK9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.700e-53
Identity = 120/266 (45.11%), Postives = 157/266 (59.02%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLL-------QELSAARKGRAVGADCLYMTRLLNGEGGKRR-CPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            VRA I  +AGK LAKA T++ RYS +R+QGF E G+   E QILDY  Q HRLLPL+A +F F + G++L+ RLR +E   V G      G+       D     HA+SS+LKS+ T + A GIEDCRKACGGHGFL  SGL E + +YLQ+ TVEG+NHML QQV++VLL       Q+   ARK  A       +  +     GK++ CP +     R   VL +A  HR+ RLL  V S ++ D    G++  EAWN A V +
Sbjct:  118 VRAFIVNDAGKQLAKACTVSIRYSAVRKQGFDESGQR--ETQILDYRQQQHRLLPLLATSFCFFYTGRTLLQRLRDIEERLVTGK-----GAVTKIDVSD----LHASSSALKSLTTMIAADGIEDCRKACGGHGFLHCSGLTELVTTYLQNPTVEGDNHMLPQQVIKVLLKLVMAVQQDAGKARKVYASSTSSYLIPEIAAIAAGKKKTCPASDEGAMRHIDVLLSAYRHRSARLLFDVASAIQ-DGVASGKSMQEAWNDAQVRM 371          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A7S2UKD5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKD5_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.870e-51
Identity = 117/270 (43.33%), Postives = 152/270 (56.30%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAVG------ADCLYMTRLLNGEGGKRR------CPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            VRA I   AGK+LA A T++ RYS +RRQGFR       E QI+DY  Q HRL PL+AA++ F F G+ ++ +L+ LE   + G      G+       D     HA+SS+LKS  T VTA GIEDCRKACGGHGFLQSSGLPE   +YLQS TVEG+NHML QQVV+VLL+ +   +             D  Y+   L      R+      C  TS    R   +L   L+HR+ RLL  V  +L      G  ++ +AWN AL+++
Sbjct:  134 VRAHIVNEAGKNLALACTMSIRYSAVRRQGFRNDSDKQ-EIQIIDYRQQQHRLFPLLAASYCFFFTGRKILAQLKALEERMLSG-----SGTVTKAQVAD----IHASSSALKSFTTTVTADGIEDCRKACGGHGFLQSSGLPELSLTYLQSPTVEGDNHMLPQQVVKVLLKLVQMVQSNNEAALAEYDMCDSKYLIEPLRAMLSHRKHQNKPSCSATSRVEMRQLPILLKTLQHRSARLLLEVAQQLESSVRAGA-SAEQAWNDALIQM 392          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A448YU70_9STRA (Acyl-coenzyme A oxidase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU70_9STRA)

HSP 1 Score: 187 bits (475), Expect = 3.620e-51
Identity = 114/263 (43.35%), Postives = 150/263 (57.03%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAV-------GADCLYMTRLLNGEGGKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALV 768
            VR++I   A K L  A  I  RYS +R+QGF   GK   E+Q+LDYT Q HR+ PL+A ++   F+G+ L   L+ +E + +   P             + +   HA+SS+LKS  T +TA GIE+CRKACGGHGFLQSSGLPE   +YLQS TVEG+NHML QQVVRVLL+ + A +  + V         D +   R +   G K +C   + K   D   L  A  HRA RLL  V S++ +D  E G    +AWN ALV
Sbjct:  331 VRSIIVVGAAKCLGMACVINIRYSAVRKQGFAADGKT--ENQVLDYTQQQHRIFPLLAFSYCTFFSGRRLAKELKAMEDKLIASKP----------VRKEDVSDVHASSSALKSFTTMITADGIEECRKACGGHGFLQSSGLPELFTTYLQSPTVEGDNHMLPQQVVRVLLKVVQAVKTNKGVENFKNCNSYDLVPSLRAIL-SGRKEQCSAINAKDLCDLPKLLVAFRHRAARLLVVVASQMNKDIAENGTEPQQAWNNALV 580          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A7S3LH98_9STRA (Acyl-coenzyme A oxidase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH98_9STRA)

HSP 1 Score: 186 bits (472), Expect = 6.890e-51
Identity = 115/264 (43.56%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKGRAVGA--DC----LYMTRLLNGEGGKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            VRA I +NAG SL KA T+A RYS +RRQGF+E G+   E Q+LDY  Q HRL PL+A+++ F F G+ ++ RL+ +E   +   P               +   HA+SSSLKS  T V A GIEDCRKACGGHG+LQSSGLPE + +YL + TVEG+NHML QQVV+VLL+ + A   G  + +   C    L  + +    G K   P  + K   ++ VL  A  HRA RLL     ++++   +G ++  EAWN  LV++
Sbjct:  302 VRAYICENAGHSLGKACTVAIRYSAVRRQGFKEDGET--EVQVLDYKQQQHRLFPLLASSYCFFFTGKKILERLKDIELRFLTEKPVTKA----------EVTDIHASSSSLKSFTTTVAADGIEDCRKACGGHGYLQSSGLPELVTTYLMNPTVEGDNHMLPQQVVKVLLKLVQAVASGDDLTSYEKCDSFDLIASLMTIFSGKKEVFPARTSKEILNTDVLLRAFRHRAARLLAECAEQMQQYTMDG-KSPQEAWNDGLVQM 552          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A7S2E652_9STRA (Acyl-coenzyme A oxidase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E652_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.540e-49
Identity = 118/272 (43.38%), Postives = 154/272 (56.62%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFR-----EGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKG------RAVGADCLYM----TRLLNGEG-GKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALV 768
            VRA I   AG SLA A TI  RYS +RRQG+      E G+   E Q++DY  Q HRL PL+AA++ F F G+ L+ +L ++E+  V G      G        D     HA+SSSLKS  T V A GIEDCRKACGGHGFLQSSGLPE   SYLQ+ TVEG+N+ML QQV +VLL+ +   ++G      +    D  Y+    T ++   G    + P  S K  +D  VL  A  HR+ R+L    +++ +D    G+T   AWN ALV
Sbjct:  324 VRAYIVDRAGLSLAMACTITIRYSAVRRQGYDGDHTPEDGEKQKELQVIDYRQQQHRLFPLLAASYCFFFTGKLLLHKLEMMEQALVSGK-----GDITKTEVADV----HASSSSLKSFTTTVAADGIEDCRKACGGHGFLQSSGLPELFTSYLQNPTVEGDNYMLPQQVTKVLLKIVQTVQEGDEDEIAKYNKCDSAYLIAPLTAMIKARGKSTEQFPAKSEKDIQDFDVLLHAFRHRSARMLLEAAAQINKDVS-SGKTFQTAWNDALV 585          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: B7FXZ0_PHATC (Acyl-coenzyme A oxidase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXZ0_PHATC)

HSP 1 Score: 181 bits (459), Expect = 4.900e-49
Identity = 119/264 (45.08%), Postives = 153/264 (57.95%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARK----GRAVGADCLYMTRLL--NGEGGKRRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALVEV 774
            VRA I   AGK+LA A TI TRYS LRRQG+   G+   E QILDY  Q HR+ PL+AA++ F F G+ +M +L+ +E + V                   +   HA+SS+LKS  T V A GIEDCRKACGGHGFLQ SGLPE + +YLQS TVEG+N ML QQVV+VLL+ +   +        V  D   +   L  N +G K  C + S     +   L AAL HR+ RLL  V S+++      G++  EAWN ALVE+
Sbjct:  302 VRAHICNEAGKNLAVACTIVTRYSALRRQGYASDGES--ELQILDYKQQQHRVFPLIAASYCFFFTGKRVMEQLKDIEDKLVSN----------KSISKAAVTDIHASSSALKSFTTTVAADGIEDCRKACGGHGFLQCSGLPELITTYLQSPTVEGDNQMLPQQVVKVLLKLVQTVQDDGDLSDYVSCDSYGLISSLQSNLKGVKEDCRIVSEIDVMNLDALLAALCHRSARLLVGVASQIQGSIS-SGKSYQEAWNDALVEM 552          
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Match: A0A6U0E7H6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0E7H6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.800e-48
Identity = 116/273 (42.49%), Postives = 157/273 (57.51%), Query Frame = 1
Query:    1 VRAVIAKNAGKSLAKAATIATRYSILRRQGF------REGGKGPGEHQILDYTIQMHRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSXXXXXXXDTLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYLQSCTVEGENHMLTQQVVRVLLQELSAARKG------RAVGADCLYMTR----LLNGEGGKR-RCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEAWNRALV 768
            VR+ I   AG +LA A T++ RYS +R+QGF       + GK   E QI+DY  Q HRL PL+AA++ F F G+ L+ +L+I+E+  V G   +           + +   HA+SSSLKS  T +TA GIE+CRKACGGHGFLQSSGLPE   +YLQ+ TVEG+N+ML QQV++VLL+ + A + G      +    D  Y+      +  GE  K  +    + K   D  VL  A  HR+ R+L  V  +L +D    GRT   AWN ALV
Sbjct:   99 VRSFIVDAAGMNLAMACTVSIRYSAVRKQGFDADDNTNKDGK-QREVQIIDYRQQQHRLFPLLAASYCFFFTGKRLLHQLQIMEQSLVSGQGDIT---------KEEVADVHASSSSLKSFTTMITADGIEECRKACGGHGFLQSSGLPELATTYLQNPTVEGDNYMLPQQVIKVLLKLVQAVQSGDEEEISKYQKCDSSYLISPLQTIFTGENTKPDQFLAKTEKDVEDLNVLLHAFSHRSARMLVEVAKQLNKDLT-SGRTMQTAWNDALV 360          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6650.15380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNK8_ECTSI2.750e-12776.83Acyl-CoA oxidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
A0A6H5K710_9PHAE9.270e-10674.09ACOX domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YNL1_9STRA3.970e-6149.63Acyl-coenzyme A oxidase n=1 Tax=Tribonema minus Ta... [more]
A0A7S4IAK9_9STRA1.700e-5345.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UKD5_9STRA2.870e-5143.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448YU70_9STRA3.620e-5143.35Acyl-coenzyme A oxidase n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3LH98_9STRA6.890e-5143.56Acyl-coenzyme A oxidase n=1 Tax=Amphora coffeiform... [more]
A0A7S2E652_9STRA3.540e-4943.38Acyl-coenzyme A oxidase n=1 Tax=Ditylum brightwell... [more]
B7FXZ0_PHATC4.900e-4945.08Acyl-coenzyme A oxidase n=1 Tax=Phaeodactylum tric... [more]
A0A6U0E7H6_9STRA3.800e-4842.49Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6650contigL-elsbetiae_contig6650:1352..5287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue7.8e-103
Seed eggNOG ortholog2880.D8LNK8
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.acyl-CoA oxidase activity
EggNOG OGsCOG1960@1,KOG0136@2759
EC1.3.3.6
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size774
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6650.15380.1prot_L-elsbetiae_contig6650.15380.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6650 1352..5287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.4976575-CDS-L-elsbetiae_contig6650:1351..15231622816736.4976575-CDS-L-elsbetiae_contig6650:1351..1523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 1352..1523 -
1691683775.6325924-CDS-L-elsbetiae_contig6650:1351..15231691683775.6325924-CDS-L-elsbetiae_contig6650:1351..1523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 1352..1523 -
1622816736.509564-CDS-L-elsbetiae_contig6650:2255..23621622816736.509564-CDS-L-elsbetiae_contig6650:2255..2362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 2256..2362 -
1691683775.648338-CDS-L-elsbetiae_contig6650:2255..23621691683775.648338-CDS-L-elsbetiae_contig6650:2255..2362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 2256..2362 -
1622816736.521343-CDS-L-elsbetiae_contig6650:3232..34771622816736.521343-CDS-L-elsbetiae_contig6650:3232..3477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 3233..3477 -
1691683775.659242-CDS-L-elsbetiae_contig6650:3232..34771691683775.659242-CDS-L-elsbetiae_contig6650:3232..3477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 3233..3477 -
1622816736.5318308-CDS-L-elsbetiae_contig6650:4495..46191622816736.5318308-CDS-L-elsbetiae_contig6650:4495..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 4496..4619 -
1691683775.6739411-CDS-L-elsbetiae_contig6650:4495..46191691683775.6739411-CDS-L-elsbetiae_contig6650:4495..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 4496..4619 -
1622816736.5421226-CDS-L-elsbetiae_contig6650:5161..52871622816736.5421226-CDS-L-elsbetiae_contig6650:5161..5287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 5162..5287 -
1691683775.6835325-CDS-L-elsbetiae_contig6650:5161..52871691683775.6835325-CDS-L-elsbetiae_contig6650:5161..5287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6650 5162..5287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6650.15380.1

>prot_L-elsbetiae_contig6650.15380.1 ID=prot_L-elsbetiae_contig6650.15380.1|Name=mRNA_L-elsbetiae_contig6650.15380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
VRAVIAKNAGKSLAKAATIATRYSILRRQGFREGGKGPGEHQILDYTIQM
HRLLPLVAAAFGFHFAGQSLMGRLRILEREHVHGLPPLPGGSGGGGGGGD
TLKQFHAASSSLKSMCTGVTAAGIEDCRKACGGHGFLQSSGLPEFLGSYL
QSCTVEGENHMLTQQVVRVLLQELSAARKGRAVGADCLYMTRLLNGEGGK
RRCPVTSPKGFRDSVVLEAALEHRAFRLLRRVESRLRRDAEEGGRTSSEA
WNRALVEV
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mRNA from alignment at L-elsbetiae_contig6650:1352..5287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6650.15380.1 ID=mRNA_L-elsbetiae_contig6650.15380.1|Name=mRNA_L-elsbetiae_contig6650.15380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3936bp|location=Sequence derived from alignment at L-elsbetiae_contig6650:1352..5287- (Laminarionema elsbetiae ELsaHSoW15)
GTTCGGGCTGTGATCGCCAAGAACGCCGGAAAGAGTTTAGCGAAGGCCGC GACCATCGCCACTCGTTACTCCATCCTGAGAAGACAGGGGTTCCGTGAGG GGGGCAAGGGGCCCGGCGAACACCAGGTAGGGTGGAGCGGGTGGAGTTCG GGTTGGTTTCTGGTTCTCCCGCAGTAGCCTCCGCAGGTTTTACTGCAAGA AACCATATGGGATAAATAGAGCATCGAAACGGCTTTATGGTTTATGGGGG GTCGGTCTGGGGGTTAAGGTTAGGGTTAGGGTTAGGGTTACAGAACCCCT GTCTATTATTTCCTTGTATATAGGCTGGAATTCTTCGCGAAGATGGTCCC TCTCCCGTGTCTTGTTGTCGTTGTGAAGGGCCTCTCGCCTTCTGCGGCAC ATGCGTATGTTTTCGCTGGGTAGCGGGATGCACTCACCCACTCACCCACC CACCAATGAAGCAAGGCGTCATGCTGCTGCTGCCACGGGTCGGTTGCGTG TCGGTTCTGACTTGAGGCTTGCTTCGACCTGGCGGCCAGATCAGTTCATC GGCTGTCAAACCTGATTTAGTTGTGGTCCTTTTTGGCTCAAGATCTATTT ATTCCTCGTTTCTTTTCTGAAACGCGACGACGAAATCTCTCCCGAACAAC GCCGTCCGTTTGTCCCAGATCTTGGACTACACGATCCAGATGCACCGCCT CCTTCCCTTGGTGGCGGCCGCGTTCGGGTTTCATTTCGCCGGCCAGTCCT TGATGGGCCGCCTCCGGATACTGGAGAGAGAGCACGTTCACGGTGAGCTC GGGTTCGCGCGGGTACAAACATGTGTGACCCCGGTTGGGTCGTCTAGCTA GTCGTGGTGGAGTATGGGGGCGGCCAGTGGGGCAGACGACGAATATGCAA GTAATGGGAGGAATAACAAAAAAACAAAAAAATGGAGCAGCAGTAAAGTA TTGTATGTACATAGTGCGCCGCAGTTTTTTTTTTTTTTTAATACGAATGT CAGCAGTCTACGCACGTCCAGTCTGTGAAAAAGTCGTTCCAGAGGGACTG CGTTGTAGGCATACCATGTAACATACTAACACCCCCCCTTTTCAAGCTGA CGCATCACAACCCTGCCGAGTCTACACCGGGATGTGCTTTGAAGGACCTT TTTCTGCAACAAAAATGCCAGCGGCCTCTTTGTACGTACGCCTAACCTGT GAGACCGCTGTTCCAGGGGGGCTGACTGCTGCTGTAGGCACCACACGAAA TACAATACCGTAGGTACCGTAGGTGGCAGAATATACCACACCCCCTGGAC CGAACTTCAGAGCTCCATTACTCCGTAACGAAGAAGGTGCCAGCACCAGA CGACACCTTTTCGGACGGCCCTCGACTAGATCTTTCCAACGCCACCCCCT TTCGGCACTGGCACCCTTCTTGGTGGCGAGGAGTCGAGCTTTCAAAATCT GTCCAAGGAGTGTGGTATCTTGTGTGTCACATATGGTAGCTCTCCCTCAA CGCCCCCCAACTACAGCAGTGGCACGTGTTTTATCTGTTTGCTGTTTGCC GACCGCTGTGTGTGGCCGATTGACAAAAAGGTTCTCAGGGTTAGGGTTGC TTCAGAAGCGGCTGCTGTTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCGG TTGAACATAAAAAAGCGTCTTTTGTCTTGAAAAAATAAAAATAAGAATGC ATACATACCTCACGCGAAAAGAAAGTGTCCGACCGTGTGTGTGGTTTTGT GCGCGTGTGTACGCACGTAAAAATAGATGCGTGAACCTGAACCCCCGCGC GCGCGCGCAGGCCTGCCGCCGCTGCCGGGGGGGAGCGGCGGCGGCGGCGG CGGCGGCGACACGCTCAAGCAGTTCCACGCGGCCAGCTCGTCCCTCAAGA GCATGTGCACCGGGGTCACAGCCGCCGGCATCGAGGACTGCCGCAAGGCC TGCGGCGGGCACGGGTTCCTGCAGTCGAGCGGCCTGCCCGAGTTCCTGGG TAGCTACCTGCAGTCGTGCACGGTGGAGGGGGAGAACCACATGCTGACTC AACAGGTATGTATGTGTGTATAATAAAGTACCTACCTACGGAGTCGTAGC GGTGGAGGGGGAGAACCCCATGCTGACTTAGCAGGTGTGTATGTATGTGT GCATAATAAAGTACCTACCTACGGAGTCGTAGCAGACAGGAGCACCGACG CGTTTTGTTGGTGGGTGTGCGTGCTGCTGTAGGCGGGGGTGTTTCGGTTG AACGAGAAGGCTGGTTGTGCCGCATCGGGGCGTGTGTACTTTGTGTGGTG GGTGTGTGGGTGTGTGGGTCTCTTGTGTGTCTCAGTTATGTGTATTTGTG TGTGTTCGCGCGACGGCGTTTTGCGCAAAAGCCTGGTTACCGTAGCTCGT GGTTGTAGTAAAGCGAGAGGGCAGTTTTGTTTTGGAGCATCACGGAATCG AGCGTTACGCTACGTACAGTACTGCCACCCGGCTCGCGTTTTTTCTCCAA TGAAACACCTCTGAATTTGCGGGCCCCCCGGCTACTACAAGCAATACAAA CGGCGTGATTTTTATTGTTTTAGCATTTTGTTTTTCCTCGTATTGTTCGT GTGAGCATAATCAACAAGCCCTCAGTGCTGTTTACGAGCGATGTGTGTGC CCTGCAAAGAATACAGGCAGACAGCGCTTTTGGGTTGAAAAACAGCTTTG ACCGTGGTTCGCCCCCGACGCACATGTTTCGTTCTCTCCNNNNNNNNNAC CGCTTTTTGGTTGAAAAACCCCTTTCCCCCGCGTTCCCCCCCCCCCCCCC CGTTTTCCTTTTCCCCCCCCCCCCCCCCCCCTGTGAATCGCCCCCCTGCT TCGTTTTTATTTTGTACTGCGTGTGGTTGATGCACGCGTGACGCGCACAT ACATGCATGATGTATGTGGACGCAGGTGGTACGCGTTTTGCTGCAGGAGC TGTCCGCCGCCCGGAAAGGCAGAGCCGTGGGAGCTGACTGCCTCTACATG ACGCGCCTCCTGAACGGTGAAGGCGGAAAGAGGTGATCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCTCTCTCTTTCTGCAGATA TCTCTGCTTCCTAAGATGAGTATGGTGCTGCGAAGGAGATGGAGACAACG CCAAGTGAAAACGAGAAGTGCACGCATATTACATACAAGCCCCGTAAATA CTCCATATTCGCGGCGAGTTTCTGTTTATATTTAGTCCACACGCATGCTC GTGTACCACAACTTCCCTCTCCCCCTTCCGTTTCTCCCCGGTACGCGGGC ATCATCAGCGATGCGCCAAAGAGCCCCGCGCCTATCGTTGGTCGGTTTTA AAAATAAACAATGAATCAAAGATGGAATCTACCCCACACTAGAGCAAGGA CTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTCGCG AAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACATCTCCCC TGCAAAGATTTAAGATTTACCAACAATGATCGCCCACCCCCCCCAGCCCG CCGCGCGCTTCCTTTGCCCCTCTTACTGATGCGTTGGGGTGGTTCTCCCA ACAAATGCTCGTACCTCGGGAAGTGAAATACGGCAGTTGTGTCTTGCCCC CCCCCCCCACCTCCCCCCGTACGCTCCCTTGTGCCCCATCTTACCGGGGC GAATCATCAACACTATGTAACGCTCCTCTGTCGTGTGTGTGTGTGTTTTT TTCCGTTCGGCCAGGCGTTGTCCCGTGACATCCCCCAAGGGTTTTCGAGA CTCCGTGGTGCTGGAGGCAGCCCTGGAGCACCGCGCCTTCCGGCTGCTGA GGCGGGTGGAGAGCCGCCTGCGCAGGGACGCGGAGGAGGGGGGCAGAACC TCCTCGGAGGCTTGGAATCGCGCTCTGGTCGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6650:1352..5287-

>mRNA_L-elsbetiae_contig6650.15380.1 ID=mRNA_L-elsbetiae_contig6650.15380.1|Name=mRNA_L-elsbetiae_contig6650.15380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig6650:1352..5287- (Laminarionema elsbetiae ELsaHSoW15)
GTTCGGGCTGTGATCGCCAAGAACGCCGGAAAGAGTTTAGCGAAGGCCGC
GACCATCGCCACTCGTTACTCCATCCTGAGAAGACAGGGGTTCCGTGAGG
GGGGCAAGGGGCCCGGCGAACACCAGGTTCGGGCTGTGATCGCCAAGAAC
GCCGGAAAGAGTTTAGCGAAGGCCGCGACCATCGCCACTCGTTACTCCAT
CCTGAGAAGACAGGGGTTCCGTGAGGGGGGCAAGGGGCCCGGCGAACACC
AGATCTTGGACTACACGATCCAGATGCACCGCCTCCTTCCCTTGGTGGCG
GCCGCGTTCGGGTTTCATTTCGCCGGCCAGTCCTTGATGGGCCGCCTCCG
GATACTGGAGAGAGAGCACGTTCACGATCTTGGACTACACGATCCAGATG
CACCGCCTCCTTCCCTTGGTGGCGGCCGCGTTCGGGTTTCATTTCGCCGG
CCAGTCCTTGATGGGCCGCCTCCGGATACTGGAGAGAGAGCACGTTCACG
GCCTGCCGCCGCTGCCGGGGGGGAGCGGCGGCGGCGGCGGCGGCGGCGAC
ACGCTCAAGCAGTTCCACGCGGCCAGCTCGTCCCTCAAGAGCATGTGCAC
CGGGGTCACAGCCGCCGGCATCGAGGACTGCCGCAAGGCCTGCGGCGGGC
ACGGGTTCCTGCAGTCGAGCGGCCTGCCCGAGTTCCTGGGTAGCTACCTG
CAGTCGTGCACGGTGGAGGGGGAGAACCACATGCTGACTCAACAGGCCTG
CCGCCGCTGCCGGGGGGGAGCGGCGGCGGCGGCGGCGGCGGCGACACGCT
CAAGCAGTTCCACGCGGCCAGCTCGTCCCTCAAGAGCATGTGCACCGGGG
TCACAGCCGCCGGCATCGAGGACTGCCGCAAGGCCTGCGGCGGGCACGGG
TTCCTGCAGTCGAGCGGCCTGCCCGAGTTCCTGGGTAGCTACCTGCAGTC
GTGCACGGTGGAGGGGGAGAACCACATGCTGACTCAACAGGTGGTACGCG
TTTTGCTGCAGGAGCTGTCCGCCGCCCGGAAAGGCAGAGCCGTGGGAGCT
GACTGCCTCTACATGACGCGCCTCCTGAACGGTGAAGGCGGAAAGAGGTG
GTACGCGTTTTGCTGCAGGAGCTGTCCGCCGCCCGGAAAGGCAGAGCCGT
GGGAGCTGACTGCCTCTACATGACGCGCCTCCTGAACGGTGAAGGCGGAA
AGAGGCGTTGTCCCGTGACATCCCCCAAGGGTTTTCGAGACTCCGTGGTG
CTGGAGGCAGCCCTGGAGCACCGCGCCTTCCGGCTGCTGAGGCGGGTGGA
GAGCCGCCTGCGCAGGGACGCGGAGGAGGGGGGCAGAACCTCCTCGGAGG
CTTGGAATCGCGCTCTGGTCGAGGTGGCGTTGTCCCGTGACATCCCCCAA
GGGTTTTCGAGACTCCGTGGTGCTGGAGGCAGCCCTGGAGCACCGCGCCT
TCCGGCTGCTGAGGCGGGTGGAGAGCCGCCTGCGCAGGGACGCGGAGGAG
GGGGGCAGAACCTCCTCGGAGGCTTGGAATCGCGCTCTGGTCGAGGTG
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