mRNA_L-elsbetiae_contig665.15378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig665.15378.1
Unique NamemRNA_L-elsbetiae_contig665.15378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig665.15378.1 vs. uniprot
Match: D7FNN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN6_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 2.040e-136
Identity = 243/356 (68.26%), Postives = 273/356 (76.69%), Query Frame = 1 
Query:    1 MHRCRDLGKFRRRWFPFPFLRPHA-PYSEYAPAAPSPSDLKKPLPDKFSVGKNLKLKAVLIQYEILAGSNGKQDRATSXXXXXXXXXXXXXXXXPNNEAIGFQPLTSSGEKLVDEITGLLG---GDSLQGMGRKLMADLKNKMGSVNPPSIPPSPPGAQQHQQ-PRDVQGSDPKAKYMERLRNKTGGGSTSGGLGAAA-SQPGGDADLFAARNLVSSTESAKLTSAWMLRQGAGDLLTYIAARSIRLGVIAGPRTTPREFESFVRQLRQQSIRVTAAIPPEVMELDGVEAGVVRAGIELGAGEGSGRAAEVLVVGSSEPLLSAATAVEMFTARFHPLNSRREGVIQTFTVRSIDEV 1050
            M RCR+LG   RRW      +     YSEYAPAAPSP+DLK PLP+KFSVGKNLKLKAVL QY++LAGSN ++   T+     XXXXXXXX   P + +  F PLT SGE LVDEITG+LG   GD LQ +GR L+ADLK+KMG+    S  P+PP  QQ +Q PR  Q SDPKAKYME+LR KTG GS S    A A SQPGGDADLFAARNLVSSTE+A L SAWMLRQGAGDLLTY+AARS+RLGVIAGP+T+PREFESFVRQLRQQSIRVT A+ PE +ELDGVEAGVVRA  ELG GEG    A+VL+VGSS PLLSAAT   MFTAR++P NSRREGVIQTF VR IDEV
Sbjct:    1 MRRCRELGHL-RRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSXXXXXXXXPGAPASPSTSFDPLTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASVTSSSAPTPPAKQQREQRPRVSQDSDPKAKYMEKLRKKTGAGSISASPAATAGSQPGGDADLFAARNLVSSTEAANLHSAWMLRQGAGDLLTYLAARSLRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEGRRGGADVLLVGSSNPLLSAATEANMFTARYYPPNSRREGVIQTFVVRDIDEV 355
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig665.15378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN6_ECTSI2.040e-13668.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig665contigL-elsbetiae_contig665:20524..22255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1050
Cds size1050
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig665.15378.1prot_L-elsbetiae_contig665.15378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig665 20524..22255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.3812683-CDS-L-elsbetiae_contig665:20523..206911622816736.3812683-CDS-L-elsbetiae_contig665:20523..20691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 20524..20691 +
1691683775.5459447-CDS-L-elsbetiae_contig665:20523..206911691683775.5459447-CDS-L-elsbetiae_contig665:20523..20691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 20524..20691 +
1622816736.3913007-CDS-L-elsbetiae_contig665:21120..214771622816736.3913007-CDS-L-elsbetiae_contig665:21120..21477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 21121..21477 +
1691683775.556861-CDS-L-elsbetiae_contig665:21120..214771691683775.556861-CDS-L-elsbetiae_contig665:21120..21477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 21121..21477 +
1622816736.4007258-CDS-L-elsbetiae_contig665:21730..222551622816736.4007258-CDS-L-elsbetiae_contig665:21730..22255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 21731..22255 +
1691683775.5688298-CDS-L-elsbetiae_contig665:21730..222551691683775.5688298-CDS-L-elsbetiae_contig665:21730..22255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig665 21731..22255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig665.15378.1

>prot_L-elsbetiae_contig665.15378.1 ID=prot_L-elsbetiae_contig665.15378.1|Name=mRNA_L-elsbetiae_contig665.15378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=350bp
MHRCRDLGKFRRRWFPFPFLRPHAPYSEYAPAAPSPSDLKKPLPDKFSVG
KNLKLKAVLIQYEILAGSNGKQDRATSSSSTSSSTAAAPSSSSPNNEAIG
FQPLTSSGEKLVDEITGLLGGDSLQGMGRKLMADLKNKMGSVNPPSIPPS
PPGAQQHQQPRDVQGSDPKAKYMERLRNKTGGGSTSGGLGAAASQPGGDA
DLFAARNLVSSTESAKLTSAWMLRQGAGDLLTYIAARSIRLGVIAGPRTT
PREFESFVRQLRQQSIRVTAAIPPEVMELDGVEAGVVRAGIELGAGEGSG
RAAEVLVVGSSEPLLSAATAVEMFTARFHPLNSRREGVIQTFTVRSIDEV
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mRNA from alignment at L-elsbetiae_contig665:20524..22255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig665.15378.1 ID=mRNA_L-elsbetiae_contig665.15378.1|Name=mRNA_L-elsbetiae_contig665.15378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1732bp|location=Sequence derived from alignment at L-elsbetiae_contig665:20524..22255+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCGGTGTCGTGATCTTGGCAAGTTTAGGCGGAGATGGTTTCCTTT
TCCTTTCCTCCGACCACACGCACCCTACTCCGAGTATGCACCTGCAGCGC
CTTCTCCCAGCGATCTGAAAAAGCCACTACCGGATAAGTTCTCCGTGGGG
AAAAACCTTAAGCTGAAGGTATGAACCAGTTTTGCGTGGAACTTGCGCAG
CTGTGGTGTTGTGGTGGTACTCTGTGAGGTATGAATGTATGTAGTCTAGA
TAAATGGCCTTGCGGCGTGTACAACTTGCAAATAGCATTGCCTCATGGAG
CCGTTCATCTGGTGCATAATAGGCAGCCTTTAAAGCTGGTTTTCATTTCA
CGATCTCATAATTCGTTAGGGTACAGCAGTATGCAACAAGAATGTTTGCC
TGCCTGATAATGCGGAACGTGGATGCCAAATGACGGATCGGAATGTGAAT
CTAAACGGTGAAACACGCCGATCAGCCCCCTTTTTCATGCGACAGCGCAA
TCCAACATATGTAGGCGAGAGACAGCAAACCTCACAACTCCACCCACCCT
CCACTCCGCTCCCGATTCCAACCGGCCTTTTGGGTCTTTTTTTTAAGGCA
GTCCTGATCCAATACGAAATCTTGGCGGGGTCCAATGGAAAGCAAGATCG
TGCCACGAGTTCGTCCAGCACCAGCAGTAGCACAGCTGCAGCTCCCTCCT
CCTCTTCCCCAAATAATGAAGCGATTGGTTTTCAACCGCTGACTTCATCC
GGAGAGAAGCTCGTCGATGAAATCACGGGCCTGCTTGGAGGGGACAGCTT
GCAGGGCATGGGGAGGAAACTGATGGCCGACCTGAAGAATAAAATGGGTT
CAGTCAACCCACCCTCCATACCACCTTCGCCCCCTGGAGCACAGCAACAT
CAGCAACCAAGGGATGTCCAGGGCTCAGACCCCAAAGCAAAGTACATGGA
AAGGGTAAGAGTTTGCGACCTTCACGCAGGGTTGCTCTATGTCCTTGATT
TTCCCTCATGAACTGCCCTCCTCCTGGTCTACCATCCTGACTTTTTTTTT
CTCGCTCGCCATCGCCACTTTCGGCGTGGACGCACTGTCTGCTGTCAAGG
GAATGAATGCGTTTCCAAACACTGCGCCGTCCTGCCCGTCTGGTTGCTCC
CTTCCTCCGCCTATCATTACCCCGATCATTCCTCTATCTTGGCCTGGTCA
ATTTTAGCTGCGAAATAAAACGGGGGGAGGGAGCACGTCTGGCGGCCTTG
GTGCGGCTGCGTCTCAGCCCGGAGGCGACGCCGACCTCTTCGCGGCAAGG
AATCTCGTGTCCTCCACGGAATCTGCAAAGCTGACGTCGGCGTGGATGCT
CCGGCAGGGTGCGGGAGATCTGCTCACCTACATTGCTGCTCGGAGTATAC
GACTCGGCGTGATAGCGGGGCCGCGAACGACCCCGAGAGAATTTGAGAGC
TTCGTCAGGCAGCTGCGGCAGCAATCCATTCGGGTGACAGCGGCCATCCC
TCCTGAGGTCATGGAGTTGGATGGTGTGGAGGCTGGTGTGGTGAGGGCAG
GGATAGAGCTGGGCGCGGGAGAAGGGAGTGGAAGAGCGGCAGAGGTGTTG
GTGGTGGGGTCGAGTGAGCCCCTCCTTTCTGCGGCAACGGCGGTAGAAAT
GTTCACCGCGAGGTTTCACCCTCTAAACAGCCGCCGGGAGGGCGTGATCC
AGACTTTTACCGTTCGAAGCATTGATGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig665:20524..22255+

>mRNA_L-elsbetiae_contig665.15378.1 ID=mRNA_L-elsbetiae_contig665.15378.1|Name=mRNA_L-elsbetiae_contig665.15378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig665:20524..22255+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCGGTGTCGTGATCTTGGCAAGTTTAGGCGGAGATGGTTTCCTTT
TCCTTTCCTCCGACCACACGCACCCTACTCCGAGTATGCACCTGCAGCGC
CTTCTCCCAGCGATCTGAAAAAGCCACTACCGGATAAGTTCTCCGTGGGG
AAAAACCTTAAGCTGAAGATGCACCGGTGTCGTGATCTTGGCAAGTTTAG
GCGGAGATGGTTTCCTTTTCCTTTCCTCCGACCACACGCACCCTACTCCG
AGTATGCACCTGCAGCGCCTTCTCCCAGCGATCTGAAAAAGCCACTACCG
GATAAGTTCTCCGTGGGGAAAAACCTTAAGCTGAAGGCAGTCCTGATCCA
ATACGAAATCTTGGCGGGGTCCAATGGAAAGCAAGATCGTGCCACGAGTT
CGTCCAGCACCAGCAGTAGCACAGCTGCAGCTCCCTCCTCCTCTTCCCCA
AATAATGAAGCGATTGGTTTTCAACCGCTGACTTCATCCGGAGAGAAGCT
CGTCGATGAAATCACGGGCCTGCTTGGAGGGGACAGCTTGCAGGGCATGG
GGAGGAAACTGATGGCCGACCTGAAGAATAAAATGGGTTCAGTCAACCCA
CCCTCCATACCACCTTCGCCCCCTGGAGCACAGCAACATCAGCAACCAAG
GGATGTCCAGGGCTCAGACCCCAAAGCAAAGTACATGGAAAGGGCAGTCC
TGATCCAATACGAAATCTTGGCGGGGTCCAATGGAAAGCAAGATCGTGCC
ACGAGTTCGTCCAGCACCAGCAGTAGCACAGCTGCAGCTCCCTCCTCCTC
TTCCCCAAATAATGAAGCGATTGGTTTTCAACCGCTGACTTCATCCGGAG
AGAAGCTCGTCGATGAAATCACGGGCCTGCTTGGAGGGGACAGCTTGCAG
GGCATGGGGAGGAAACTGATGGCCGACCTGAAGAATAAAATGGGTTCAGT
CAACCCACCCTCCATACCACCTTCGCCCCCTGGAGCACAGCAACATCAGC
AACCAAGGGATGTCCAGGGCTCAGACCCCAAAGCAAAGTACATGGAAAGG
CTGCGAAATAAAACGGGGGGAGGGAGCACGTCTGGCGGCCTTGGTGCGGC
TGCGTCTCAGCCCGGAGGCGACGCCGACCTCTTCGCGGCAAGGAATCTCG
TGTCCTCCACGGAATCTGCAAAGCTGACGTCGGCGTGGATGCTCCGGCAG
GGTGCGGGAGATCTGCTCACCTACATTGCTGCTCGGAGTATACGACTCGG
CGTGATAGCGGGGCCGCGAACGACCCCGAGAGAATTTGAGAGCTTCGTCA
GGCAGCTGCGGCAGCAATCCATTCGGGTGACAGCGGCCATCCCTCCTGAG
GTCATGGAGTTGGATGGTGTGGAGGCTGGTGTGGTGAGGGCAGGGATAGA
GCTGGGCGCGGGAGAAGGGAGTGGAAGAGCGGCAGAGGTGTTGGTGGTGG
GGTCGAGTGAGCCCCTCCTTTCTGCGGCAACGGCGGTAGAAATGTTCACC
GCGAGGTTTCACCCTCTAAACAGCCGCCGGGAGGGCGTGATCCAGACTTT
TACCGTTCGAAGCATTGATGAGGTACTGCGAAATAAAACGGGGGGAGGGA
GCACGTCTGGCGGCCTTGGTGCGGCTGCGTCTCAGCCCGGAGGCGACGCC
GACCTCTTCGCGGCAAGGAATCTCGTGTCCTCCACGGAATCTGCAAAGCT
GACGTCGGCGTGGATGCTCCGGCAGGGTGCGGGAGATCTGCTCACCTACA
TTGCTGCTCGGAGTATACGACTCGGCGTGATAGCGGGGCCGCGAACGACC
CCGAGAGAATTTGAGAGCTTCGTCAGGCAGCTGCGGCAGCAATCCATTCG
GGTGACAGCGGCCATCCCTCCTGAGGTCATGGAGTTGGATGGTGTGGAGG
CTGGTGTGGTGAGGGCAGGGATAGAGCTGGGCGCGGGAGAAGGGAGTGGA
AGAGCGGCAGAGGTGTTGGTGGTGGGGTCGAGTGAGCCCCTCCTTTCTGC
GGCAACGGCGGTAGAAATGTTCACCGCGAGGTTTCACCCTCTAAACAGCC
GCCGGGAGGGCGTGATCCAGACTTTTACCGTTCGAAGCATTGATGAGGTA
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