mRNA_L-elsbetiae_contig6640.15371.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6640.15371.1
Unique NamemRNA_L-elsbetiae_contig6640.15371.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A6H5KX02_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX02_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 4.970e-54
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            FLPDG VFDASNAPGRKPIAF+LG RQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNG+CLVKPGM+VRYDLQLKRVAPTP
Sbjct:  124 FLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPTP 211
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A6S9M8W0_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8W0_HETAK)

HSP 1 Score: 132 bits (332), Expect = 3.700e-37
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            +LPD  VFD+S+APGRKP+AFKLGARQVI GWEEVL  M+ GAEVQ VVPA +A+G KG+C+D+GECL+KP  ++++D++LKRVA  P
Sbjct:  102 YLPDNTVFDSSDAPGRKPLAFKLGARQVIPGWEEVLPYMSVGAEVQAVVPAKLAYGSKGVCLDSGECLIKPDTDLKFDIKLKRVAIPP 189
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7S2UZW0_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.450e-36
Identity = 56/88 (63.64%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            +L DG++FD+S  PGRKP+AFK G +QVI GWEEVL  M AG EV+MVVPA +A+G KGIC+++GECL++P  E++YDL LKRVAP P
Sbjct:  101 YLSDGRIFDSSTGPGRKPLAFKFGGKQVIPGWEEVLPYMKAGGEVKMVVPASLAYGSKGICVEDGECLIQPDEELKYDLTLKRVAPPP 188
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: W7U710_9STRA (Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U710_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.200e-29
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   19 LPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            L DG +FD  + PG+KP+AFK+GA+QVI G EE L  M AG E Q++VPAD+AFG+KG+C + GECLV P   V+Y++ LKRVA +P
Sbjct:  128 LSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSP 214
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7R9YBJ8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBJ8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.570e-27
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDN----GECLVKPGMEVRYDLQLKRVA 270
            +  DGKVFD+S   GRKP+AF++G  QVIKGWEEVL  +NAG+EVQM VP+ +AFG+KGIC++      ECLV PG  V+Y L ++++A
Sbjct:   95 YKADGKVFDSSTTQGRKPVAFRMGQGQVIKGWEEVLERVNAGSEVQMRVPSALAFGEKGICVETPQGKDECLVLPGETVKYQLFVRQIA 183
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A8J2WS77_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS77_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.060e-27
Identity = 45/85 (52.94%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVA 270
            FLP+G+VFD++   G KP++F+LG RQV+ G E+V+  M  G EVQ ++PA +A+GDKG+C D+GECL+KPG  ++Y ++L RVA
Sbjct:   97 FLPNGQVFDSTEKKGGKPLSFRLGERQVVPGIEQVVAQMKPGEEVQALLPASLAYGDKGVCTDDGECLIKPGTNLKYFIRLNRVA 181
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7S1TJB1_9RHOD (Peptidylprolyl isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJB1_9RHOD)

HSP 1 Score: 107 bits (266), Expect = 4.370e-27
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            +L +G+VFD S +PGRKP+AF LG R+VI  WEE L  M +G   +++VP  +A+GD+G+C+ +GECL+ P   + YDL+L R+AP P
Sbjct:  111 YLSNGQVFDNSKSPGRKPLAFPLGQRKVIPAWEEALSTMKSGGTRKIIVPPSLAYGDRGVCVPSGECLIPPNETLEYDLKLLRIAPPP 198
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BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7S0G2J4_9RHOD (Peptidylprolyl isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2J4_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 8.790e-27
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            +L +GKVFD S +PGRKP+AF+ G  QVI GWEE +  M  G   +++VPA +A+GD+G+C++   CL++PG  + YD+QL RVA +P
Sbjct:   21 YLANGKVFDNSESPGRKPLAFRFGQNQVIPGWEEGMAGMKPGGVRKLIVPAKLAYGDRGVCVEGQGCLIQPGETLSYDIQLLRVAISP 108
[Close]
BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7S3EMP8_9RHOD (Peptidylprolyl isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMP8_9RHOD)

HSP 1 Score: 102 bits (254), Expect = 1.570e-25
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            +L +GKVFD S +PGRKP+AF+ G  QVI GWEE +  M  G   ++VVP  +A+GD+G+C++   CL++PG  + YD+QL RVA +P
Sbjct:   88 YLSNGKVFDNSESPGRKPLAFRFGQNQVIPGWEEGIASMKPGGVRKLVVPPRLAYGDRGVCVEGQGCLIQPGETLSYDIQLLRVAISP 175
[Close]
BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Match: A0A7S2BVQ8_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVQ8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.860e-25
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   16 FLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP 279
            FLP+G+VFD++   G KP+AFKLG++QVI G E+V+  M  G EVQ ++P+ +A+G+KG+C D GECL+ P   ++Y ++LK VA  P
Sbjct:   68 FLPNGQVFDSTEKKGGKPLAFKLGSKQVIVGLEQVVSQMLPGEEVQALIPSALAYGEKGVCTDGGECLIDPNTNLKYYIKLKSVAAPP 155
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6640.15371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX02_9PHAE4.970e-5494.32Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6S9M8W0_HETAK3.700e-3765.91Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A7S2UZW0_9STRA1.450e-3663.64Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
W7U710_9STRA7.200e-2957.47Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae T... [more]
A0A7R9YBJ8_9STRA1.570e-2756.18Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyr... [more]
A0A8J2WS77_9STRA3.060e-2752.94Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A7S1TJB1_9RHOD4.370e-2750.00Peptidylprolyl isomerase n=1 Tax=Compsopogon caeru... [more]
A0A7S0G2J4_9RHOD8.790e-2750.00Peptidylprolyl isomerase n=1 Tax=Rhodosorus marinu... [more]
A0A7S3EMP8_9RHOD1.570e-2550.00Peptidylprolyl isomerase n=1 Tax=Rhodosorus marinu... [more]
A0A7S2BVQ8_9STRA1.860e-2550.00Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6640contigL-elsbetiae_contig6640:5352..6275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D7FQE6
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-01_006400.1
Exons2
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.7088695-CDS-L-elsbetiae_contig6640:5351..54981622816735.7088695-CDS-L-elsbetiae_contig6640:5351..5498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6640 5352..5498 -
1691683775.0539625-CDS-L-elsbetiae_contig6640:5351..54981691683775.0539625-CDS-L-elsbetiae_contig6640:5351..5498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6640 5352..5498 -
1622816735.719323-CDS-L-elsbetiae_contig6640:6140..62751622816735.719323-CDS-L-elsbetiae_contig6640:6140..6275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6640 6141..6275 -
1691683775.069501-CDS-L-elsbetiae_contig6640:6140..62751691683775.069501-CDS-L-elsbetiae_contig6640:6140..6275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6640 6141..6275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6640.15371.1prot_L-elsbetiae_contig6640.15371.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6640 5352..6275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6640.15371.1

>prot_L-elsbetiae_contig6640.15371.1 ID=prot_L-elsbetiae_contig6640.15371.1|Name=mRNA_L-elsbetiae_contig6640.15371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MRASRFLPDGKVFDASNAPGRKPIAFKLGARQVIKGWEEVLRLMNAGAEV
QMVVPADMAFGDKGICIDNGECLVKPGMEVRYDLQLKRVAPTP*
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mRNA from alignment at L-elsbetiae_contig6640:5352..6275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6640.15371.1 ID=mRNA_L-elsbetiae_contig6640.15371.1|Name=mRNA_L-elsbetiae_contig6640.15371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig6640:5352..6275- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCGAGCAGGTTCTTGCCGGATGGGAAGGTGTTCGACGCGAGCAA
TGCGCCCGGTAGGAAGCCTATCGCCTTCAAGCTCGGTGCGCGGCAGGTCA
TCAAGGGATGGGAAGAAGTGCTGCGCCTGATGAACGTGAGAGAGGACGGA
AAGGAAAAACAAAATATGTGCCGTCTGAGTCGCTGGCAAAGGTTGAAGAC
TGCTACTGCAACCCTTGTCTGTGTGCATGTTTTTAGAAACCAAGGGCTAA
CCCTGCCAGGAAATTGCCAAGGCCACCGAAGATGTTTGAAGCATGCAGCA
TCTGACCTCTGGCCGCACGCACGCGTACGCGCATGCCTGCGGTTCTCTTT
TGCCGTTTGCTTTTTGCTTAACCTTGAGGACCTCGTTGGATGACGCTGCA
GTAATTAGCGTCACAAGCAAAGCTCTGTTGTCAGACTTCCGCATGAATGC
TTTTAGCAGTACTTGTAGGGTAGATAAGTTTCCTGCTTCAGGCGCTCCGC
GTTTCAGACGCGCTTTTCTGCAAAGCATGCCACGCCAAAGATGCCGACAA
CCGTTGGCGATTTCAACACACACGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACCCACCCTTTTG
TCACCACACACCCACACAAAAAACAACCCCCACCCCTTGTTGTTTTCCAA
ACCCCCCCCCCCCCCCCCCCCCCCCGCGAACACGCTCTGTGCATGCACTG
GCATATGTATGACCAAATGTGCCTCAGGCCGGCGCCGAGGTGCAGATGGT
GGTGCCTGCAGACATGGCCTTCGGCGACAAAGGAATTTGCATCGACAACG
GCGAGTGCCTCGTCAAGCCGGGCATGGAAGTACGTTACGACCTTCAGCTG
AAGCGTGTCGCGCCGACTCCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6640:5352..6275-

>mRNA_L-elsbetiae_contig6640.15371.1 ID=mRNA_L-elsbetiae_contig6640.15371.1|Name=mRNA_L-elsbetiae_contig6640.15371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig6640:5352..6275- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCGAGCAGGTTCTTGCCGGATGGGAAGGTGTTCGACGCGAGCAA
TGCGCCCGGTAGGAAGCCTATCGCCTTCAAGCTCGGTGCGCGGCAGGTCA
TCAAGGGATGGGAAGAAGTGCTGCGCCTGATGAACATGCGAGCGAGCAGG
TTCTTGCCGGATGGGAAGGTGTTCGACGCGAGCAATGCGCCCGGTAGGAA
GCCTATCGCCTTCAAGCTCGGTGCGCGGCAGGTCATCAAGGGATGGGAAG
AAGTGCTGCGCCTGATGAACGCCGGCGCCGAGGTGCAGATGGTGGTGCCT
GCAGACATGGCCTTCGGCGACAAAGGAATTTGCATCGACAACGGCGAGTG
CCTCGTCAAGCCGGGCATGGAAGTACGTTACGACCTTCAGCTGAAGCGTG
TCGCGCCGACTCCTTAAGCCGGCGCCGAGGTGCAGATGGTGGTGCCTGCA
GACATGGCCTTCGGCGACAAAGGAATTTGCATCGACAACGGCGAGTGCCT
CGTCAAGCCGGGCATGGAAGTACGTTACGACCTTCAGCTGAAGCGTGTCG
CGCCGACTCCTTAA
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