mRNA_L-elsbetiae_contig6637.15364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6637.15364.1
Unique NamemRNA_L-elsbetiae_contig6637.15364.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6637.15364.1 vs. uniprot
Match: D8LE72_ECTSI (FHA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE72_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.320e-24
Identity = 66/113 (58.41%), Postives = 75/113 (66.37%), Query Frame = -2 
Query:   30 DEPVAQSLEALTRRAEVVAEDLGRTRAGLAELEAEXXXXXXXXXXXXXXXXXXXXXXXXXXPLDTFMTENRKKERQQALLRLTAQQEALLGEQGRLKVMVEAARPSLPSLKGS 368
            +E  AQSLEALTRR E V EDL RT+AGLAELEAE                          PLD FMTENR+KERQQA++RLTA++EAL  EQ  LKVMVEAARPS+P+LK S
Sbjct:  437 NEAAAQSLEALTRRGEAVVEDLERTQAGLAELEAEEAGEAALAEDGGVAAD----------PLDMFMTENRRKERQQAIVRLTAKREALREEQALLKVMVEAARPSMPTLKKS 539
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6637.15364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE72_ECTSI8.320e-2458.41FHA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6637contigL-elsbetiae_contig6637:7967..8340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.8804317-CDS-L-elsbetiae_contig6637:7966..83381622816734.8804317-CDS-L-elsbetiae_contig6637:7966..8338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6637 7967..8338 +
1691683774.4177108-CDS-L-elsbetiae_contig6637:7966..83381691683774.4177108-CDS-L-elsbetiae_contig6637:7966..8338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6637 7967..8338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6637.15364.1prot_L-elsbetiae_contig6637.15364.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6637 7967..8338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6637.15364.1

>prot_L-elsbetiae_contig6637.15364.1 ID=prot_L-elsbetiae_contig6637.15364.1|Name=mRNA_L-elsbetiae_contig6637.15364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
APEPAALAGTEPFNDGREGRAASTITLRRPCSPRSASCWAVSLNSACCLS
FLRFSVMNVSRGSAAAAAAALPPSPPSASAASPASSASSASSSASPARVL
PRSSATTSARLVSASRLCATGSSP
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mRNA from alignment at L-elsbetiae_contig6637:7967..8340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6637.15364.1 ID=mRNA_L-elsbetiae_contig6637.15364.1|Name=mRNA_L-elsbetiae_contig6637.15364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=374bp|location=Sequence derived from alignment at L-elsbetiae_contig6637:7967..8340+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGAGCCGGCGGCCTTGGCTGGAACAGAGCCTTTCAATGACGGCAG
GGAGGGCCGAGCGGCCTCGACCATAACTTTGAGGCGCCCCTGCTCTCCCA
GGAGCGCTTCTTGCTGGGCGGTCAGCCTCAACAGCGCCTGCTGCCTCTCC
TTCTTGCGGTTCTCGGTCATGAACGTGTCCAGGGGGTCCGCTGCCGCCGC
CGCCGCGGCGCTACCCCCCTCCCCGCCGTCCGCCAGCGCTGCCTCCCCCG
CTTCCTCGGCCTCCTCGGCCTCCAGCTCCGCCAGCCCGGCCCGCGTCCTC
CCCAGGTCCTCCGCAACCACTTCAGCCCGTCTCGTCAGCGCCTCTAGGCT
TTGCGCCACGGGCTCATCTCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6637:7967..8340+

>mRNA_L-elsbetiae_contig6637.15364.1 ID=mRNA_L-elsbetiae_contig6637.15364.1|Name=mRNA_L-elsbetiae_contig6637.15364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6637:7967..8340+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCGGAGCCGGCGGCCTTGGCTGGAACAGAGCCTTTCAATGACGGCAG
GGAGGGCCGAGCGGCCTCGACCATAACTTTGAGGCGCCCCTGCTCTCCCA
GGAGCGCTTCTTGCTGGGCGGTCAGCCTCAACAGCGCCTGCTGCCTCTCC
TTCTTGCGGTTCTCGGTCATGAACGTGTCCAGGGGGTCCGCTGCCGCCGC
CGCCGCGGCGCTACCCCCCTCCCCGCCGTCCGCCAGCGCTGCCTCCCCCG
CTTCCTCGGCCTCCTCGGCCTCCAGCTCCGCCAGCCCGGCCCGCGTCCTC
CCCAGGTCCTCCGCAACCACTTCAGCCCGTCTCGTCAGCGCCTCTAGGCT
TTGCGCCACGGGCTCATCTCCCGCACCGGAGCCGGCGGCCTTGGCTGGAA
CAGAGCCTTTCAATGACGGCAGGGAGGGCCGAGCGGCCTCGACCATAACT
TTGAGGCGCCCCTGCTCTCCCAGGAGCGCTTCTTGCTGGGCGGTCAGCCT
CAACAGCGCCTGCTGCCTCTCCTTCTTGCGGTTCTCGGTCATGAACGTGT
CCAGGGGGTCCGCTGCCGCCGCCGCCGCGGCGCTACCCCCCTCCCCGCCG
TCCGCCAGCGCTGCCTCCCCCGCTTCCTCGGCCTCCTCGGCCTCCAGCTC
CGCCAGCCCGGCCCGCGTCCTCCCCAGGTCCTCCGCAACCACTTCAGCCC
GTCTCGTCAGCGCCTCTAGGCTTTGCGCCACGGGCTCATCTCCC
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