mRNA_L-elsbetiae_contig6634.15360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6634.15360.1
Unique NamemRNA_L-elsbetiae_contig6634.15360.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: D8LIY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY2_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.450e-69
Identity = 128/182 (70.33%), Postives = 136/182 (74.73%), Query Frame = 1 
Query:    1 VTAACSLTAY-SFGPLLPQRSIQRMSSADTATGTTPPIPTPPCRRETGLGLHVQAAEPTTRLQALRKMAGTISLLPAAGAVTVGAGGGLSFPAEARAAKGAAAGEAGKKEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYTVTQNK 543
            V  AC L AY S GPL P R     S A   TGTT    +    RE G  +       TTRLQ L+KM   ISLLPAAGAV VGAGGGL+FP EARAAKG+A  +A +KEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPE+DREECLQ CQDECC SYEQCTYTVTQNK
Sbjct:   19 VQEACELFAYTSVGPLKPPRKTPHGSVAGVRTGTT----SLGSSREDGPEIMSVVEPMTTRLQVLQKMGAAISLLPAAGAVAVGAGGGLAFPEEARAAKGSA--DATQKEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMSYEQCTYTVTQNK 194
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A835YXU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.840e-28
Identity = 63/102 (61.76%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:  238 VTVGAGGGLSFPAEARAAKGAAAGEAGKKEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYTVTQNK 543
            V   AG  L  PA A AA+ A     GK+ W+SGK   PK +DDK GT+K+SKYLRCLSNCLA CQKP+Y  E+DR+ECLQ CQD CC SY QCTY V QNK
Sbjct:   30 VAAAAGIALGEPALAAAAETAE----GKRLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK 126
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A7S2UWJ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWJ7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.540e-23
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:  328 WISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYTV 531
            W+SGKG +PK S D  GT+K+  +LRCLSNCLA CQKPT G ++DR ECL+ C+DECC +YEQCTYT+
Sbjct:  142 WLSGKGDKPKDSKDTKGTKKDINFLRCLSNCLAVCQKPTSGVQRDRSECLEDCRDECCQTYEQCTYTI 209
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: W7U4A4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4A4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.970e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:  328 WISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYT 528
            WISGK  +P+GS D+TGT+++S YLRCLS+C  +C+KP  GP KD  ECL+ CQD CC +YEQCTYT
Sbjct:  165 WISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A7S2H145_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H145_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.210e-19
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:  328 WISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQK-PTYGPEKDREECLQTCQDECCTSYEQCTYTVTQN 540
            WISGK  +PK S DKTGT+K++K+LRCLSNC++DCQ+    G   DR+ C   CQD+CC +YEQCT T+  N
Sbjct:   71 WISGKSEKPKDSKDKTGTKKDTKFLRCLSNCVSDCQQLGATGKMTDRDTCYAQCQDDCCETYEQCTCTLNPN 142
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A0G4ECE9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECE9_VITBC)

HSP 1 Score: 86.3 bits (212), Expect = 1.020e-16
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  262 LSFPAEARAAKGAAAGEAGKKEWISGKGAQPKGSDDKT--GTRKESKYLRCLSNCLADCQKP-TYGPEKDREECLQTCQDECCTSYEQCTYTV 531
            L+    A AA+G   GE  K+ WISGK  +PK  D K   GT+++ K+L+CLS CL++C+KP +YG  K  +ECL+ C+DECC +YEQC+Y +
Sbjct:   65 LAVSISASAAEG---GEGEKRLWISGKSTEPK-KDPKAREGTKRDPKFLKCLSQCLSECKKPGSYGYSKSEDECLEDCRDECCFTYEQCSYAI 153
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A8J5X4I7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4I7_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 5.850e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:  325 EWISGK--GAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTY 525
            +WISG+  G +PK   D TGT+++ KYLRCL+NCL  C     G +KD+  CLQ CQDECC++Y QC+Y
Sbjct:   62 QWISGRNPGGKPK-DGDVTGTKRDPKYLRCLNNCLPSCIGGPSGVQKDKSTCLQECQDECCSTYAQCSY 129
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A8J2WIU1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIU1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.800e-13
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  322 KEWISGKGAQ-PKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYTV 531
            K ++SGK    P+   D  GT+K+  YL+CL+ C A C+K   G +  R ECL  C+DECC +YEQCTYT+
Sbjct:   45 KTYVSGKNPDGPREKGDTKGTKKDGSYLQCLAGCAARCEKAKSGRQLTRGECLNLCRDECCVTYEQCTYTI 115
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A7S0PYZ7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYZ7_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 4.280e-13
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  328 WISGKGAQP--KGSDDKT-GTRKESKYLRCLSNCLADCQ-KPTYGPEKDREECLQTCQDECCTSYEQCTYTVTQ 537
            W+SGK + P  K S DK  GT+K+ KYL CL++C+  CQ  PT G +K+R +C + CQDECC +Y+QCTY + Q
Sbjct:   81 WLSGK-SDPIRKTSKDKPDGTKKDPKYLSCLNDCVPRCQGPPTSGNQKERADCFEECQDECCATYQQCTYKIRQ 153
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BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Match: A0A7S0JB69_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JB69_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 9.840e-12
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  328 WISGKGAQP--KGSDDKT-GTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQCTYTVTQ 537
            W+SGK + P  K S DK  GT+++ K+L CL++C+  CQ P    +KDR +C + CQDECC +Y+QCTY + Q
Sbjct:   80 WLSGK-SDPIRKTSKDKPDGTKRDPKFLSCLNDCVPRCQGPPGMNQKDRADCFEECQDECCFTYQQCTYKIRQ 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6634.15360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LIY2_ECTSI1.450e-6970.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXU0_9STRA2.840e-2861.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UWJ7_9STRA6.540e-2364.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U4A4_9STRA2.970e-2262.69Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2H145_9STRA8.210e-1956.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4ECE9_VITBC1.020e-1648.39Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A8J5X4I7_DIALT5.850e-1553.62Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J2WIU1_9STRA1.800e-1347.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0PYZ7_9EUKA4.280e-1351.35Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0JB69_9EUKA9.840e-1247.95Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6634contigL-elsbetiae_contig6634:9155..10667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue3e-52
Seed eggNOG ortholog2880.D8LIY2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8UA@1,2SF9D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1067
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6634.15360.1prot_L-elsbetiae_contig6634.15360.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6634 9224..10146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.6850522-UTR-L-elsbetiae_contig6634:9154..92231622816734.6850522-UTR-L-elsbetiae_contig6634:9154..9223Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6634 9155..9223 +
1691683774.2905362-UTR-L-elsbetiae_contig6634:9154..92231691683774.2905362-UTR-L-elsbetiae_contig6634:9154..9223Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6634 9155..9223 +
1622816734.7312803-UTR-L-elsbetiae_contig6634:10146..106671622816734.7312803-UTR-L-elsbetiae_contig6634:10146..10667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6634 10147..10667 +
1691683774.3291771-UTR-L-elsbetiae_contig6634:10146..106671691683774.3291771-UTR-L-elsbetiae_contig6634:10146..10667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6634 10147..10667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816734.6952367-CDS-L-elsbetiae_contig6634:9223..94661622816734.6952367-CDS-L-elsbetiae_contig6634:9223..9466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9224..9466 +
1691683774.3008742-CDS-L-elsbetiae_contig6634:9223..94661691683774.3008742-CDS-L-elsbetiae_contig6634:9223..9466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9224..9466 +
1622816734.7067113-CDS-L-elsbetiae_contig6634:9642..96961622816734.7067113-CDS-L-elsbetiae_contig6634:9642..9696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9643..9696 +
1691683774.310361-CDS-L-elsbetiae_contig6634:9642..96961691683774.310361-CDS-L-elsbetiae_contig6634:9642..9696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9643..9696 +
1622816734.7191687-CDS-L-elsbetiae_contig6634:9966..101461622816734.7191687-CDS-L-elsbetiae_contig6634:9966..10146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9967..10146 +
1691683774.3195086-CDS-L-elsbetiae_contig6634:9966..101461691683774.3195086-CDS-L-elsbetiae_contig6634:9966..10146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6634 9967..10146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6634.15360.1

>prot_L-elsbetiae_contig6634.15360.1 ID=prot_L-elsbetiae_contig6634.15360.1|Name=mRNA_L-elsbetiae_contig6634.15360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MSSADTATGTTPPIPTPPCRRETGLGLHVQAAEPTTRLQALRKMAGTISL
LPAAGAVTVGAGGGLSFPAEARAAKGAAAGEAGKKEWISGKGAQPKGSDD
KTGTRKESKYLRCLSNCLADCQKPTYGPEKDREECLQTCQDECCTSYEQC
TYTVTQNK*
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mRNA from alignment at L-elsbetiae_contig6634:9155..10667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6634.15360.1 ID=mRNA_L-elsbetiae_contig6634.15360.1|Name=mRNA_L-elsbetiae_contig6634.15360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1513bp|location=Sequence derived from alignment at L-elsbetiae_contig6634:9155..10667+ (Laminarionema elsbetiae ELsaHSoW15)
GTTACCGCAGCATGTAGTTTGACTGCATACAGTTTCGGGCCGCTGCTGCC
GCAAAGGAGCATCCAGCGAATGTCGTCGGCGGATACGGCAACGGGAACAA
CACCACCAATACCAACACCACCTTGCCGCCGAGAAACCGGGTTAGGGTTG
CATGTACAAGCGGCGGAACCAACGACTCGGCTGCAGGCGCTCCGGAAGAT
GGCCGGGACCATTTCTTTGCTTCCGGCAGCGGGGGCGGTAACTGTTGGAG
CAGGAGGGGGGTTGAGTTTCCCGGCGGAAGCGCGAGCCGCAAAGGGGGCT
GCGGCGGGGGAGGTGAGAGAGACTCCGTTTCCTCGAGCCACACGACGACG
GCAAGTTTTCTTGACGCATCTCAAGAACGCATTCCTCCAACCGGGGGTGG
AACTATTGTGATTTTGCCTGCGATGCTTCAGCTGCATGTGTTGACGGCCA
ATTTTGCGCTCCATTTTTTGCCTCCGTTTTCCCGGCAGGCGGGCAAGAAG
GAATGGATTTCTGGGAAGGGAGCGCAGCCTAAAGGATCAGATGTGAGTGA
AGGCTCCGATGGCAGGCATACATTAACAAATTAACCAGCCGGTTGTCGTA
GCTTGGCATGAGAAAAGAGAAACTTGAGCAACCATGTGTCAAGAAGCGTG
AAATTTGCTTTGGGCATGCATGCGCAGTGGGAGGGGCGATAAACAACGAC
AGCAGCAAGACATATGTCTCCATCCTTTCATTGGGCCTCCTACTGTAGTC
TCCCAAATGGCACATCCGTAACGGCAATAATATTACCCCAAAATGATGCA
CGCACTTTCCAGGATAAAACGGGGACCCGGAAAGAATCCAAGTACCTGCG
GTGCCTCAGCAACTGCCTAGCGGATTGCCAGAAGCCGACGTACGGGCCAG
AGAAAGATCGAGAGGAGTGCCTGCAGACTTGTCAAGACGAGTGTTGTACA
TCTTACGAACAATGTACATACACAGTCACGCAAAATAAGTGATGGGTGAG
GACCGCTGCTAGCCGTATACGCACCCTGCTGGTGCGGCGCGAAACAAGCG
GCACGGTGTGTTGAGAGTGCCATGGAGTTTAGTTGGCACGTGTCACGGGA
TAGCTGGGAGGCGAAGGTCTAAACCGTTGGTGGCGTGTCTTATGGACGGG
TTCTTCAATACTCGTATGCGACGAATGATGTGCAAAGGAGCCCGTCTCTC
ACCAATGTTGCTCGCTCGGGGTTATAGAGAGGATAGCTATGGCCGATGTA
GAGGAGGGGGTAAACAGCAAAATTACATGAGAGTGCTTGAACGTCTGCGC
TCTAAGGTAGGCCAGGATCACGTGGCTAAGTAGCAAAGGCCAACCCCAGA
GAGGGCGAAGAGGCATGTTGTGTTTTGTGGCCGCACCCGGCAAAAACTGA
CGTGGTTTCCAGGTGGTCGGTCAAATGGCAGTTATATAGCGGCGCAACCG
CCTTTTTGCTCTGTTTTCGCTATTACACTACAATTAACTCTGGGACTAGG
CTCGTCACAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6634:9155..10667+

>mRNA_L-elsbetiae_contig6634.15360.1 ID=mRNA_L-elsbetiae_contig6634.15360.1|Name=mRNA_L-elsbetiae_contig6634.15360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig6634:9155..10667+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCGGCGGATACGGCAACGGGAACAACACCACCAATACCAACACC
ACCTTGCCGCCGAGAAACCGGGTTAGGGTTGCATGTACAAGCGGCGGAAC
CAACGACTCGGCTGCAGGCGCTCCGGAAGATGGCCGGGACCATTTCTTTG
CTTCCGGCAGCGGGGGCGGTAACTGTTGGAGCAGGAGGGGGGTTGAGTTT
CCCGGCGGAAGCGCGAGCCGCAAAGGGGGCTGCGGCGGGGGAGATGTCGT
CGGCGGATACGGCAACGGGAACAACACCACCAATACCAACACCACCTTGC
CGCCGAGAAACCGGGTTAGGGTTGCATGTACAAGCGGCGGAACCAACGAC
TCGGCTGCAGGCGCTCCGGAAGATGGCCGGGACCATTTCTTTGCTTCCGG
CAGCGGGGGCGGTAACTGTTGGAGCAGGAGGGGGGTTGAGTTTCCCGGCG
GAAGCGCGAGCCGCAAAGGGGGCTGCGGCGGGGGAGGCGGGCAAGAAGGA
ATGGATTTCTGGGAAGGGAGCGCAGCCTAAAGGATCAGATGCGGGCAAGA
AGGAATGGATTTCTGGGAAGGGAGCGCAGCCTAAAGGATCAGATGATAAA
ACGGGGACCCGGAAAGAATCCAAGTACCTGCGGTGCCTCAGCAACTGCCT
AGCGGATTGCCAGAAGCCGACGTACGGGCCAGAGAAAGATCGAGAGGAGT
GCCTGCAGACTTGTCAAGACGAGTGTTGTACATCTTACGAACAATGTACA
TACACAGTCACGCAAAATAAGTGAGATAAAACGGGGACCCGGAAAGAATC
CAAGTACCTGCGGTGCCTCAGCAACTGCCTAGCGGATTGCCAGAAGCCGA
CGTACGGGCCAGAGAAAGATCGAGAGGAGTGCCTGCAGACTTGTCAAGAC
GAGTGTTGTACATCTTACGAACAATGTACATACACAGTCACGCAAAATAA
GTGA
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