mRNA_L-elsbetiae_contig657.15271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig657.15271.1
Unique NamemRNA_L-elsbetiae_contig657.15271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 2.580e-155
Identity = 260/323 (80.50%), Postives = 282/323 (87.31%), Query Frame = 2 
Query:   50 MMARSVMLS-AWASGMCSVGQAFVTPNVAVIPGGSFLSHAAA-APRSRPAPPAS-------ESRRDAPLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELKEGKVYYSTDSDAMITKGLAGLL-AMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASP---TAAPVEEEAEEGGTMAARINDKLQGLEPLKLSIVDESGGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEVGM 979
            M+AR+ +LS A ++ +CSVG++FVTPNVAV+PGG+F SH AA A RSR   PA+         R DAPLMSTSTDLK+LGLTPELERLTKVFRSCPTDKMRQMQLLHL QMG+KMD ALQTEENKVLGCLSTVYVAAE+K+G +YYSTDSDAMITKG A LL AMGLSGN PEAIQTVKPEFIQVAGLQASL AGRNNGFINMLRTMKGKALALGGESAIRAA+EQA+P   TAAP  EEAEE GTMA+R+ +KLQ LEPLKL I DESGGEESKF+I IVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEE GM
Sbjct:    1 MVARAAILSVALSTSVCSVGESFVTPNVAVVPGGAFSSHRAAQAARSRR--PAAXXXXXXRSGRDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAP--EEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.690e-69
Identity = 142/270 (52.59%), Postives = 173/270 (64.07%), Query Frame = 2 
Query:  200 ASESRRDAPL-MSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELKEGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEEEAE---------EGGTMAARINDKLQGLEPLKLSIVDESGGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEVGM 979
            AS  RR APL MST+  ++ELGLT ELERL K FRS P DKMR  QLL +A  G ++ +  +T +NKV GCLSTV+V A++K+GKVY+  DSDA +TKGL  +L  GLSGN    IQ+VKPEFIQVAGLQ SLT GRNNGFINML TMK KAL                        ++E          G  M   I  KLQ L P++L + DES  +E KF I +VS +FEGL L+KRH+ V+  +ADEMK VHAV L TKTP E+G+
Sbjct:   50 ASARRRAAPLLMSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQGKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGKPMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 185 bits (470), Expect = 6.730e-50
Identity = 117/266 (43.98%), Postives = 156/266 (58.65%), Query Frame = 2 
Query:  245 DLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELKEGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALA----LGGES------AIRAAVEQASPTAAPVEEEAEEGGTMAARINDKLQGLEPLKLSIVDES------------GGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKI-VHAVTLDTKTPEEV 973
            D K+LGLTPEL RL K F + P  K+R  QLL+LAQ  E +    +T ENKV GCLSTV+V  +    K+++  DSDA +TKGL  LL  GL+G   E I+ + PEF+ VAGL  SLT GRNNGF+NML+TMK KA      L G S      + R    QASP+ A         G + + I +KLQ L+P +L + D+S               E+ F + +VS +F GL+L+KRH+ VY L+  E+K  +HA+ +  KTP EV
Sbjct:   64 DEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETA-----SGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSEV 324
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A8J5XHT0_DIALT (SufE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHT0_DIALT)

HSP 1 Score: 181 bits (459), Expect = 1.000e-48
Identity = 118/264 (44.70%), Postives = 156/264 (59.09%), Query Frame = 2 
Query:  227 LMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAEL-KEGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEEEAEEGGTMAAR--INDKLQGLEPLKLSIVDESG------------GEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMK-IVHAVTLDTKTPEE 970
            LMS S     LGLTPELE++ +VF+  P  K+R  QLL LAQ  + MDA L+  ENKV GCLSTV+V A     G ++Y+ DSDAM+TKGL  LL  GLSG+  + I  V P+FIQ AG+ ASLT GRNNG +NML  MK KA AL G  A+ +    A+P+A+P     E GG   A   I   L  L+P  + + D S               E+ F + +VS  F GL+L++RH+ +Y L+A+EM   VHA+ +  +T  E
Sbjct:   35 LMSAS-----LGLTPELEQVVEVFKMVPDQKLRYQQLLFLAQKAKPMDAVLKVPENKVPGCLSTVFVHATADSSGNIFYTGDSDAMLTKGLVVLLTDGLSGHTADEILAVDPKFIQEAGIAASLTPGRNNGLLNMLALMKQKAKALAGV-AVPSGPSAANPSASPPAPVVEGGGAPVADSIIGKVLAKLKPTTVRLRDNSAQHAGHAGREGLAASETHFALEVVSDVFSGLSLVQRHQLIYALLAEEMAGSVHALQITARTTAE 292
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A7S1T9Y1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9Y1_9RHOD)

HSP 1 Score: 181 bits (458), Expect = 1.560e-48
Identity = 121/255 (47.45%), Postives = 148/255 (58.04%), Query Frame = 2 
Query:  245 DLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELK-EGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEEE--AEEGGTMAARINDKLQGLEPLKLSIVDES-----------GGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKI-VHAVTLDTKTP 964
            +L  LGLTPELERLT+ F   P  KMR  QLL +AQ    MD +L T ENKV GCLSTVYV A    +G V+   DSDA +TKGL  LL  GL G   E I+ V PEFIQ +GL  SLT GRNNGF+NML  +K KA A      I + VE  S T  PV E     + G +  RI  KL  L+P +L I D+S              E+ F I I S +FE LT ++RHR +Y L+A E+   VHA+ +D +TP
Sbjct:   46 ELDALGLTPELERLTRQFSMVPDPKMRYQQLLFMAQELPSMDTSLMTSENKVPGCLSTVYVHASRNGDGTVHLVGDSDAQLTKGLIALLIQGLDGKTVEEIERVSPEFIQASGLAVSLTPGRNNGFLNMLAKIKAKARAC-----IDSPVEVLSATPDPVVERNIPPDAGPIYRRIAQKLSVLKPTELVISDKSKQHSGHPGNLQAKTETHFSIRIRSTAFEPLTPVQRHRVIYTLLAQELNDGVHALQIDAQTP 295
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.600e-45
Identity = 113/265 (42.64%), Postives = 155/265 (58.49%), Query Frame = 2 
Query:  227 LMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELKEGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALG--GESAIRA--AVEQASPTAAPVEEEAEEGGTMAARINDKLQGLEPLKLSIVDESG-----------GEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEVG 976
            + ST  D   LGLTP L  +++ F+    ++ R   LL LA   + M    +  ENKV GCLSTVYV A +++GKVY+  DSDA +TKGL  LL  G+SG   E IQ VKPEFI+ AG+ ASLT GRNNGF+NML  +K KA+     GE A +   AVE     A PV          ++ +   +  L+P +L + D+S            G ES F + IV+  FEGL+L++RH+ VY ++A EM+ +HA+++D KTP E G
Sbjct:   56 MSSTDIDESSLGLTPRLFEVSRAFQLMD-ERTRVQNLLALASSMKPMKDFRKLPENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPV---------YSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310
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BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A7S4I3L9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.650e-44
Identity = 128/309 (41.42%), Postives = 169/309 (54.69%), Query Frame = 2 
Query:  149 SFLSHAAAAPRSRPAP---PASESRRDAPLMSTS-----TDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELK------EGKVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAS------PTAAPVEEEAEEGGTMAARINDKLQG-LEPLKLSIVDES----------GGEES---KFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEV 973
            SF++ +AAA R R +P   P+S S   +  +S S     T    LGLTPEL R+T  F S P +KMR  QLL +A     +       ENKV GCLSTVYV A ++      E  V +  +SD ++TKGL  LL  GLSG   E +Q V PEFI  A +  SLT GRNNGF+NML  MK KA  +GG  A  A  +  S        AA +  E  EG  M   +  KL   L+P  + +VD S          G EES    F I IV+++F+GL+L+KRH+ VY L+ D M+ +HA+ +  +TP+EV
Sbjct:   38 SFVTSSAAAIRPRGSPFFLPSSSSSSLSKSLSLSATDEATTADPLGLTPELRRMTDAFASIPDEKMRYKQLLFMANQLPAISPDAMVPENKVPGCLSTVYVDAVMERDEERGEDVVKFLGESDGLLTKGLVALLVRGLSGCTAEEVQRVNPEFIHEAKISQSLTPGRNNGFLNMLAVMKKKAAEIGGPEAAAAGDDAGSVEEGEDEVAATLTFEEVEGKPMYNAMMAKLTTMLKPTSIELVDNSDQHAGHAGSKGWEESGESHFSINIVAEAFDGLSLVKRHQLVYMLLGDIMQKIHALQIVARTPDEV 346
[Close]
BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.700e-44
Identity = 105/268 (39.18%), Postives = 156/268 (58.21%), Query Frame = 2 
Query:  230 MSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYV---AAELKEGKVY--YSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEEEAEE--GGTMAARINDKLQGLEPLKLSIVDESGGE-------------ESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEV 973
            M+ +++++ LGLTPELE++TK F S P +K+R  QLL++A   + +D  L   ENKV GCLSTVYV   A + +EG+    +  DSD  +TKGL  LL  G+SG   E IQ V PEFI  A +  SLT GRNNGF+NML  MK KA +     A  +  E+A      V    +E  G  M   + + L  L+P+ L ++D+S                ES FV+ +V++ F+G+ L+KRH+ +Y ++ + M  +HA++++ K P +V
Sbjct:   50 MADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSY-SVGADNSGGEEADADTEGVISSFDEIAGKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQV 316
[Close]
BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 166 bits (419), Expect = 2.710e-43
Identity = 111/261 (42.53%), Postives = 143/261 (54.79%), Query Frame = 2 
Query:  236 TSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYV---AAELKEG--KVYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEEEAEEGGTMAARINDKLQGLEPLKLSIVD----------ESGGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEV 973
            T TD   + LTPEL ++   F S   DK+R  QLL++A     +D +    ENKV GCLSTVYV   A +  +G  ++ +  DSD ++TKGL  LL  GLSGN  E IQ V P FIQ  G+ ASLT GRNNGF+NML  MK KA  L          E A+ TA   +        M   I   LQ L+P+ L + D           S   E+ F + IV+ +FEGL L+KRH+ VY L+ D M  +HA+ +  KTPEEV
Sbjct:   16 THTD-NPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQLEANYQATGPSESATTTAGDEK-------PMYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEEV 268
[Close]
BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Match: A0A7S2NSI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSI8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.180e-43
Identity = 108/266 (40.60%), Postives = 153/266 (57.52%), Query Frame = 2 
Query:  230 MSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGEKMDAALQTEENKVLGCLSTVYVAAELKEGK----VYYSTDSDAMITKGLAGLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQASPTAAPVEE--EAEEGGTMA-ARINDKLQGLEPLKLSIVDES-------GGE----ESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEV 973
            M TS+ L    LTPELE +T  F   P +K+R  QL+ LAQ    M   L+ + NKV GCLSTV+V A L +      V Y+ DSD ++TKGL  LL  GLSGN  E I  V P+F+  AG+ ASLT GRNNGF+NML TMK +A  +   +   A  E    ++A +    + +EG  M  A ++  +  L+P  +++VD S       G +    ES F + IV++ F+GL L+KRH+ +Y ++ + M  +HA+ +   TPEEV
Sbjct:   27 MVTSSALNAENLTPELEMMTAAFARMPDEKLRYKQLMFLAQKLAPMPDNLKIDANKVPGCLSTVHVHATLDDSVEPPVVNYTGDSDGILTKGLVALLVRGLSGNTAEVIDKVTPDFVNTAGISASLTPGRNNGFLNMLATMKKQANEVTAGATTTATNEXXEISSASIVTSFDEQEGRPMYNAMMSTLINFLKPTSINLVDNSHQHAGHAGSKGYDGESHFELEIVAECFDGLALVKRHQLIYTILGEIMPKIHALQIKANTPEEV 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig657.15271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE2.580e-15580.50SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA1.690e-6952.59Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
M2XAG5_GALSU6.730e-5043.98Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A8J5XHT0_DIALT1.000e-4844.70SufE domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S1T9Y1_9RHOD1.560e-4847.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A4D9DCV6_9STRA1.600e-4542.64SufE domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S4I3L9_9STRA1.650e-4441.42Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3Q629_9STRA2.700e-4439.18Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K9T0_FISSO2.710e-4342.53SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2NSI8_9STRA4.180e-4340.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig657contigL-elsbetiae_contig657:147..5786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score477.6
Seed ortholog evalue4.3e-132
Seed eggNOG ortholog2880.D7G7R0
Preferred namebola1
KEGG koko:K22066
Hectar predicted targeting categorychloroplast
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
Exons4
Model size1836
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig657.15271.1prot_L-elsbetiae_contig657.15271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig657 1001..5737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.168982-UTR-L-elsbetiae_contig657:146..10001622816725.168982-UTR-L-elsbetiae_contig657:146..1000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 147..1000 -
1691683767.3811495-UTR-L-elsbetiae_contig657:146..10001691683767.3811495-UTR-L-elsbetiae_contig657:146..1000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 147..1000 -
1622816725.2352676-UTR-L-elsbetiae_contig657:5737..57861622816725.2352676-UTR-L-elsbetiae_contig657:5737..5786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 5738..5786 -
1691683767.4503372-UTR-L-elsbetiae_contig657:5737..57861691683767.4503372-UTR-L-elsbetiae_contig657:5737..5786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig657 5738..5786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.1810424-CDS-L-elsbetiae_contig657:1000..12111622816725.1810424-CDS-L-elsbetiae_contig657:1000..1211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 1001..1211 -
1691683767.393906-CDS-L-elsbetiae_contig657:1000..12111691683767.393906-CDS-L-elsbetiae_contig657:1000..1211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 1001..1211 -
1622816725.1925783-CDS-L-elsbetiae_contig657:2962..31301622816725.1925783-CDS-L-elsbetiae_contig657:2962..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 2963..3130 -
1691683767.4058845-CDS-L-elsbetiae_contig657:2962..31301691683767.4058845-CDS-L-elsbetiae_contig657:2962..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 2963..3130 -
1622816725.2054338-CDS-L-elsbetiae_contig657:4379..45771622816725.2054338-CDS-L-elsbetiae_contig657:4379..4577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 4380..4577 -
1691683767.4223402-CDS-L-elsbetiae_contig657:4379..45771691683767.4223402-CDS-L-elsbetiae_contig657:4379..4577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 4380..4577 -
1622816725.218334-CDS-L-elsbetiae_contig657:5381..57371622816725.218334-CDS-L-elsbetiae_contig657:5381..5737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 5382..5737 -
1691683767.43495-CDS-L-elsbetiae_contig657:5381..57371691683767.43495-CDS-L-elsbetiae_contig657:5381..5737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig657 5382..5737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig657.15271.1

>prot_L-elsbetiae_contig657.15271.1 ID=prot_L-elsbetiae_contig657.15271.1|Name=mRNA_L-elsbetiae_contig657.15271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MMARSVMLSAWASGMCSVGQAFVTPNVAVIPGGSFLSHAAAAPRSRPAPP
ASESRRDAPLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLA
QMGEKMDAALQTEENKVLGCLSTVYVAAELKEGKVYYSTDSDAMITKGLA
GLLAMGLSGNPPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGK
ALALGGESAIRAAVEQASPTAAPVEEEAEEGGTMAARINDKLQGLEPLKL
SIVDESGGEESKFVITIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTL
DTKTPEEVGM*
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mRNA from alignment at L-elsbetiae_contig657:147..5786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig657.15271.1 ID=mRNA_L-elsbetiae_contig657.15271.1|Name=mRNA_L-elsbetiae_contig657.15271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5640bp|location=Sequence derived from alignment at L-elsbetiae_contig657:147..5786- (Laminarionema elsbetiae ELsaHSoW15)
ACTGCCTGTGCCCGCTTACCTCACACGACGCCAACAACCAACCATCACGA
TGATGGCACGATCAGTAATGTTATCAGCGTGGGCAAGCGGCATGTGTTCG
GTCGGCCAGGCATTTGTGACTCCCAATGTTGCAGTAATCCCAGGCGGGTC
GTTTTTGTCACACGCGGCAGCAGCCCCACGCTCGAGACCAGCACCTCCTG
CTTCGGAGTCAAGACGTGATGCCCCTCTCATGTCGACCTCGACTGACCTC
AAGGAGCTGGGGTTGACCCCGGAGCTGGAGCGATTGACGAAGGTTTTTAG
ATCATGCCCTACGGACAAGATGCGACAAATGCAGTTGTTGCACCTGGCCC
AAATGGGAGAGAAGATGGACGCGGCACTCCAGACCGAGGAGAACAAGGTG
TTGGGGTGAGCCTTTGCCGTCAGGAAAGGGAGAACATAGTGAGGACATCG
ATCGAAAGGGTTAAGGACGCCAGAGAACTGCGTACGTACGTGACGTAAAC
CCTGAAAATTCGCCGCAGGAGGCTCATGCACAGGAGGAGAAAGCAGTAAG
CGAGGCTCATTGTGTGCTGGTTCCCGGGAGCAGTAACTCCACGCGGATTT
GTGTACTACTTCGAACTTCGAAGTAGTCATTTAGTCAGCAGAGATGTTGG
ATTACGCACATTCACGAGACTCCCTCTCCCTCTAGGCGGCCGCTGGCTAA
TTTGCTGGTGTCCCTGAAATAATTCGATGGCATCCCACTTTGGCACAAGC
ACTGCAGTCTCTCTGGCGGTTTGTACGGAATCAGACGTCGGAGCTGTCCT
GCCCTGGGTAGGGAGCCTGAGTCCATCTAATGTACCTTCAAGGCTGCTGC
AGTTTGGTACGGAATCCGACGCCTGAGAGTCCTGCTTTGTAGGGAGCCTG
AGTGCGTCCAATGTTCCTTCAGGCTGCTGCTGCTGCTGCTGCTGCGGCTG
CGGCTGCTGCGGCTGCTGCTGCTGCTAGTACAAAGCAGATCTGCAGCTGC
TGAGTGAGACATGCCTCTGCTCTGCTATCCCACTGGAGGCTTGTCTCTGT
TGTACGAGCATGCTGTACCTGGTGTACACACAGGCTGTACCTGTTACACA
CAATAGGAGCAGTGTTCCATACTCTCCTCCGCTCCCCTGCTGCGTAGAAA
TATCGCGCAACGCTTTCTAGCGCCCGACTCGTCCGGACGTGTTTATTGGT
CCGTCCCAGGTGCCTGTCCACCGTGTACGTGGCGGCTGAGTTAAAGGAGG
GTAAGGTCTACTACTCGACGGACTCGGACGCGATGATCACGAAGGGCCTG
GCCGGTCTTCTCGCGATGGGGCTGTCAGGCAACCCTCCCGAAGCCATCCA
GACCGTGAAGCCGGAGTTTATTCAAGTGGCTGGTCTCCAAGCGAGCCTTA
CTGCCGGGTAAGGTCCGTTGCGTGTCCCATCCACCACAACACTGCTGCGA
ATCCTTCGCTCTTGTCCTAGTCCGGTGCTTTTATGTGTATGTACTCCGGA
GGTATATATACACTCGTGTGTGTGTTCCGGTGTGTACGTCGGTTTACAGC
AGTAGTGATGATCATACCTTTGTTTCCAGTTGCTGTGAAGGGGTGTGGTG
ATGGGTACGGAGAGTCGAACGCTGGTCCAGAATGTTTTTAATACACGCAA
ATGGCGCTCGAGTGACAACATGCGCAACAGGCACAGCATGGGAGTTCCGC
CTCGAAGAAGAGAAACGAAGGTGCAAGTTTGTTTTTTCGGCGAGCATGCT
TTTCCTGGTTTTTGTGTTTGTCTGCTACAAGACCCTCTTTCAGGCGTTGC
TCATGGACTCATGGATAAACACTCCACGGGCTCAAGAAGCAAGAGAGTGG
GCCAAGCGATCGATACCTGCATGCCTGTTCTGTGCCCGACTTGGAGCTTG
GAGCGTTTTCAACGATTTTGAAGTAGTTGAACACCGGGGAAGAACAAGAG
GCGGGCGCAATTTTTTTTTGTGCCGGCTCCGCGAGGGTTCTGTGTGTGTT
TGTCATCGCCAGAAAAATACACGAAAACAGCAAGATAGGATCACTCGTTG
ACTACTGTTCGAGTTGCGCAACACTATGAGAGTTGCCGAGGGAAGTGTCG
GCCGTCACACTCAAGAATCATAACCCGTTTACGTCGCCACGTGCGTGGCT
TGCAACCGAACAGCACACAGACCTGCGCTCCTAGAGACAGCGCTCGGACA
GCGAGAAGAACCATCGACCGTGCGTGATATGTATTTCAACCTTACAGAAA
AGGTGTCCTTGCTTTCAGCTGTCTCGAGGTGGCCGAGAAAGGCGAAGAGT
TATCGAGTGGTGGGCTGTGCGTTCGCGGCGCCGAAAAAGGAGCGCTGTTT
TTTTGCCGCTGGCCGGCGGATCGTTGAAAAACAAAACGCTGAGTTTGCAG
AGAAGAGGCTGAAAAACTGACGTTCGTAGCAGCAGCTGTTCAAGCGGAAG
GGGACAGAAAGCTCAAACCGCCAGGCGGCTCATAACGACCACAGTTCCCA
TATCTATTACTAGATGCACAGGGGGGCTGTCATCGCTGTCTCCGTACTGC
ATTGCGGGAAGTTTACTCGGGAATCTCTGCCACACTCTGCTATTCATGCG
TTAGACGGCTTGCTCACGGGTGCATCGACTCCTTGGTGTTATTTTGCTGC
ACCCAGGCGCAACAACGGGTTTATTAATATGCTGCGAACAATGAAGGGGA
AGGCGCTAGCCTTAGGCGGCGAGTCCGCCATCCGCGCCGCGGTGGAGCAA
GCATCGCCGACTGCAGCGCCGGTGGAGGAGGAAGCAGAGGAAGGCGGGAC
GATGGCGGCCCGGATAAACGACAAGTGAGTGCGGCGGAGTACGGCTGCTT
TGTGGTCGGGGGTTCCCGCACAGGACATCCTACTGCCTCTGCCGACCTAA
ACCAGTTTCCGAGCCACGTGCCATCGGGCTGTACTCTTGCATGCCTTCAG
CATACCTACATGTGCGGTCGATGAAGCATCGGAGGTTCGTTCTGCGCCCC
CCCCCCGGCCGCTGTCCTTCCTCTCTCGTTTGGCGCGAGCTTTGCAGTTA
GTCTGGCTGGCTTGTGGTGTGCGCCCACGGCGAATGGCATGTTGACCGCG
CCGAACAGGCTCGACTATCTATGATACACGATTGGTGACTAGAACCTGCC
GCTTCTTCCAGCCGGCGTCCATACACAAGCCCTGGTGTTTTGCTTTTACA
CCAGCGGAGTAATAAACCTAGGTTTCAGTTGGAGGTAGACGCGAAAAACC
TAGGCCTACGCTAGGTTTCCGGCCTATTGGTTCACCACGGCGCTCGGCCT
AACACGCACCTTAACCACCCTAACCCTAACCCACACCCACACACCAGGCT
AGGTTGGTGTGCCGGATTTAGGCCTAGGTGGTTGTACCGAGCTACTGGTG
TATATAAGACTTGACCCCAGGGCTGATGTATATACGTGCTGCGCCGCTTC
TTCCGCTCTTTCGCTGAGGCGGTTTAGTCACATTTTTTTTACAGATTTTG
TTCTATCTAATGCTGCAACAACGTCAGCAGCCTATGTGTGCACATACGTC
AAAACTGCTGCGAAGATCGGCGTTTGCGAGGGGAACTGTCGTGGACAAAC
TGCCGCAATCACGGCCGACTGCACGGAGAGTATATTTTTTTTGTGCTGTG
TGGGGATGGCAGGGTGGTGATAAAATCATGCGACATTTACGGGCTGTCGG
AAGAGCTACTACTACTGTACAGAGAGAAAGGAGAGTTGCACAGAGGTTTT
GTGTGAAGGTTAATGTACACACAAGGCGCTCGACTACTGTTGAAAGTCTC
CCGTGTTGGTTTTACCAAACCCAACTCCAGCAAAGCACGCATTCCCACGA
GTTAACCTAGTTATGTATGCTCCCCACACCATCTCTCGATGGCAAGACAA
AGGATGGACAACAGACCGCGTCCTGCGGGTGGGCGGGCCCCTAGACGTTT
TCAGGGTATGTATCCCCTTTTTGCACGACGCGAGTGCAAATAACGACGTG
CACGCCTCGTGTCTTGATTGGCCGAAGACCCGCCGCGCGGTTTTTGCAAG
AATGCCAACCGAACGCGCGGCGAAGCCGCGCAGAGGCGCGCCCCTTTGGC
ACCCGATATCACGCCAGAAATCAAGCGTTTGGGTTGGGGTTGGGGTTGGG
TCGGGAGCGGCATAAAACGCGCAAAGTGTTGCCATGAGGCGCGCAAAAGA
GGGGTTCGAAGCGTGCACGTCTTGTTTGCACTCGCATCGTGCAAATAGGG
GTTGCCCGTTTTCAGAGAGGCTCTGTCTTTGATTGCTGCATCTGGGCTGG
GGATGGGTTGTCGCTAGGAGATCCACTCGAAGACACTAACATCGCACCAC
CAACCCTGACCCAAGCCGTCATTGGTCATCCCATCCAACCTCACAGGCGG
ATCATCAGCGGGCACATACCTTATCGGCGGGCACACGCCCCCCCCCCCCC
CCCCGATTGAGTCGTCTGCTTACGGCGAACATAAGTTGCCCATGCGGGCG
GACCATCAAGTTTTTATTTCTCACCAACAACGCGCGCGTTCCCAACCCGG
CCGCTCGCCTCTCTGTGGCACGCAGGCTGCAAGGGCTCGAGCCCTTGAAG
CTGTCCATCGTGGACGAGTCGGGCGGCGAGGAGTCCAAGTTCGTGATTAC
CATCGTCAGCAAGTCCTTCGAGGGCCTGACGCTGCTGAAGCGGCACAGAT
CTGTGTACGGCCTCATGGCCGACGAGATGAAGATTGTGCATGCCGTTACC
CTGGACACCAAGACGCCGGAGGAAGTGGGCATGTAAACCGCGTTTTTTTG
GGACCAGAACACCCTCGGCGCAATTTTATTTTGTCGTCGACTTTTTTGGC
CGGACTAAATCCGTCAGCATATGTGTACGACGCATGGCGGCACATGCTCC
TCGTTTCTTGTTCTCATCGGGGGGTTCTGCGGAACGGGTGCAGGAATTTT
GAGGATTCTACGCTCGACAACCTCGACCTTTGTTTTGCGAATTCTGCCTG
CGGTAAGCACGGTCCGGTTGCCCAAGAGGGACTCTTCTGGTACAAGTGCG
GGCGGGCCGAGCGTGTTACTGGGTGCATTTAGGAACACCATGACGTCAAG
CAGACGATAACTTTTCTTTTTTTTTAGGTATAAGTTATCCTGTGACCACG
GGAATTGACCGCATCACGTGTTGGATTGTACGGACATAGGCTGGGGGGAG
AGATCGGAACGGTTTTTAATGTGAAGAAACAACAACAAGACTTGATTTTT
TCCGGCAGAAATCTGGTGGGTGGATGGGTGGGTAGGTGTCCGTGGTTTTC
TGGAAGCCTTGCCTTTTACTTTTCTTTCGAGAGAGGATACTTTTGGTTTT
GGTTTTTGGTGCTGTGTTGTTGTGTTCGGCTAGTGATTTATTTATACGTT
GTATGCTTGAAAATGTACGACGTGAACGGCTGAGGCCTTGCCGTATTTTG
GCCGATATCCCACCTGGCAATGTTAGCGTGGTTTTTGTAGTCGCAACGTT
TCACCCCCGGGGGTCGCTTGGGGCGTTGCATGGAAGGACTACTGCGAACG
ATTGAGGTTAACCCTTTCGTGACGGGTGAATTTTTTGAATTTTTTGAATT
TTCAGCCGAAGATCATTTACACACGCACACCAGCATAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig657:147..5786-

>mRNA_L-elsbetiae_contig657.15271.1 ID=mRNA_L-elsbetiae_contig657.15271.1|Name=mRNA_L-elsbetiae_contig657.15271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig657:147..5786- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCACGATCAGTAATGTTATCAGCGTGGGCAAGCGGCATGTGTTC
GGTCGGCCAGGCATTTGTGACTCCCAATGTTGCAGTAATCCCAGGCGGGT
CGTTTTTGTCACACGCGGCAGCAGCCCCACGCTCGAGACCAGCACCTCCT
GCTTCGGAGTCAAGACGTGATGCCCCTCTCATGTCGACCTCGACTGACCT
CAAGGAGCTGGGGTTGACCCCGGAGCTGGAGCGATTGACGAAGGTTTTTA
GATCATGCCCTACGGACAAGATGCGACAAATGCAGTTGTTGCACCTGGCC
CAAATGGGAGAGAAGATGGACGCGGCACTCCAGACCGAGGAGAACAAGGT
GTTGGGATGATGGCACGATCAGTAATGTTATCAGCGTGGGCAAGCGGCAT
GTGTTCGGTCGGCCAGGCATTTGTGACTCCCAATGTTGCAGTAATCCCAG
GCGGGTCGTTTTTGTCACACGCGGCAGCAGCCCCACGCTCGAGACCAGCA
CCTCCTGCTTCGGAGTCAAGACGTGATGCCCCTCTCATGTCGACCTCGAC
TGACCTCAAGGAGCTGGGGTTGACCCCGGAGCTGGAGCGATTGACGAAGG
TTTTTAGATCATGCCCTACGGACAAGATGCGACAAATGCAGTTGTTGCAC
CTGGCCCAAATGGGAGAGAAGATGGACGCGGCACTCCAGACCGAGGAGAA
CAAGGTGTTGGGGTGCCTGTCCACCGTGTACGTGGCGGCTGAGTTAAAGG
AGGGTAAGGTCTACTACTCGACGGACTCGGACGCGATGATCACGAAGGGC
CTGGCCGGTCTTCTCGCGATGGGGCTGTCAGGCAACCCTCCCGAAGCCAT
CCAGACCGTGAAGCCGGAGTTTATTCAAGTGGCTGGTCTCCAAGCGAGCC
TTACTGCCGGGTGCCTGTCCACCGTGTACGTGGCGGCTGAGTTAAAGGAG
GGTAAGGTCTACTACTCGACGGACTCGGACGCGATGATCACGAAGGGCCT
GGCCGGTCTTCTCGCGATGGGGCTGTCAGGCAACCCTCCCGAAGCCATCC
AGACCGTGAAGCCGGAGTTTATTCAAGTGGCTGGTCTCCAAGCGAGCCTT
ACTGCCGGGCGCAACAACGGGTTTATTAATATGCTGCGAACAATGAAGGG
GAAGGCGCTAGCCTTAGGCGGCGAGTCCGCCATCCGCGCCGCGGTGGAGC
AAGCATCGCCGACTGCAGCGCCGGTGGAGGAGGAAGCAGAGGAAGGCGGG
ACGATGGCGGCCCGGATAAACGACAAGCGCAACAACGGGTTTATTAATAT
GCTGCGAACAATGAAGGGGAAGGCGCTAGCCTTAGGCGGCGAGTCCGCCA
TCCGCGCCGCGGTGGAGCAAGCATCGCCGACTGCAGCGCCGGTGGAGGAG
GAAGCAGAGGAAGGCGGGACGATGGCGGCCCGGATAAACGACAAGCTGCA
AGGGCTCGAGCCCTTGAAGCTGTCCATCGTGGACGAGTCGGGCGGCGAGG
AGTCCAAGTTCGTGATTACCATCGTCAGCAAGTCCTTCGAGGGCCTGACG
CTGCTGAAGCGGCACAGATCTGTGTACGGCCTCATGGCCGACGAGATGAA
GATTGTGCATGCCGTTACCCTGGACACCAAGACGCCGGAGGAAGTGGGCA
TGTAAGCTGCAAGGGCTCGAGCCCTTGAAGCTGTCCATCGTGGACGAGTC
GGGCGGCGAGGAGTCCAAGTTCGTGATTACCATCGTCAGCAAGTCCTTCG
AGGGCCTGACGCTGCTGAAGCGGCACAGATCTGTGTACGGCCTCATGGCC
GACGAGATGAAGATTGTGCATGCCGTTACCCTGGACACCAAGACGCCGGA
GGAAGTGGGCATGTAA
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