mRNA_L-elsbetiae_contig656.15260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig656.15260.1
Unique NamemRNA_L-elsbetiae_contig656.15260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig656.15260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig656contigL-elsbetiae_contig656:31745..34738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig656.15260.1prot_L-elsbetiae_contig656.15260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig656 31745..34736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816723.7933798-CDS-L-elsbetiae_contig656:31744..317811622816723.7933798-CDS-L-elsbetiae_contig656:31744..31781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 31745..31781 +
1691683766.372333-CDS-L-elsbetiae_contig656:31744..317811691683766.372333-CDS-L-elsbetiae_contig656:31744..31781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 31745..31781 +
1622816723.806297-CDS-L-elsbetiae_contig656:32905..331051622816723.806297-CDS-L-elsbetiae_contig656:32905..33105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 32906..33105 +
1691683766.3892117-CDS-L-elsbetiae_contig656:32905..331051691683766.3892117-CDS-L-elsbetiae_contig656:32905..33105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 32906..33105 +
1622816723.819902-CDS-L-elsbetiae_contig656:34601..347361622816723.819902-CDS-L-elsbetiae_contig656:34601..34736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 34602..34736 +
1691683766.403854-CDS-L-elsbetiae_contig656:34601..347361691683766.403854-CDS-L-elsbetiae_contig656:34601..34736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig656 34602..34736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig656.15260.1

>prot_L-elsbetiae_contig656.15260.1 ID=prot_L-elsbetiae_contig656.15260.1|Name=mRNA_L-elsbetiae_contig656.15260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
QGQDSLVSKPAGGTSVIYQPAAAVANTTTGSLRAVGEGGPHDPQEGGRRL
ETGLCVRVDDSAWSRPLNIAVQGAGGPFQVPGGRWPRLRRPAPVINAAEL
RKSIQRRGHRSPSPSSGIGSGTGS
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mRNA from alignment at L-elsbetiae_contig656:31745..34738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig656.15260.1 ID=mRNA_L-elsbetiae_contig656.15260.1|Name=mRNA_L-elsbetiae_contig656.15260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2994bp|location=Sequence derived from alignment at L-elsbetiae_contig656:31745..34738+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGCAGGACTCATTGGTCTCCAAGCCGGCAGGGGGTGAGCATATCTA
GCGCCCTCGTTTGCTTTGTTGTGGCTCTGAAGTCGTTTTATTCGATACTT
CTATATTTTTGAGCAATTAGTAGACGCTATTTAGATGAAAAGGTTTTACG
CCCTATATACAGATATACCTGTGAAAAAAGTGTTTTTTTGGCCGCCGCGG
GGAAGAGGTGGAAGTACCTATGTAAGTACCACGCACGCGTTGTGTTTGGA
AGTTTAAGGCGGTGAGACGTTGTGGCGATACGTATGTACGTGTGGGTGCA
TGATCGTTGGCCTGTGAGGCGTTGGTGCGATACGTATCATGTGTGTATGT
GTGTGTGTGTGTGTGTTGTTTCTCACATTAGCTCTCTAGTCCAAAACTTC
CTTGGGGGCCCGTGGTTACAAAACAGGGCACACTCGACGCCGCTGAAGAA
ATAAATAAAACAAACATAAGTATGGTACATACGCGCCCGGCGGTACTAAA
CTGAGCCCCGAGGGGATCTTGCGTCTCGCTGGCACAAATCATGTGTGTGT
GTGTGTGATTGTTGGCTTTTTGAGGTCGTCGTTTTTGCCTCGCGTTTGTT
GGACGGTCCCTTCTTATTGCGCCGTTCCTCGGAAGCCGTCGTGAAGCTAG
GTTTTACCGCCGTCCCGAGAGGAGGGCCGTGTCTTGTGCCAAGGGGGGGT
TTGTTAGGTCGCTCTCTTATCGAGTACGAGCGTGTGTATCACCGGTTAGT
GGCGCACATTCTCATGGTGTACAAGTGTGTGTACCTGGTGTGCGTGTCAC
CAGGCAGTAAAGAAAAAGACGTGGAATGCGGCGCACTGAAGTCATGCATC
TCCCTCCACCAGGCATCCGCAGGAAAAAAATGCCAAGAAAAATAACTGGG
ATTGTCGAGAGGAACGACCATCATGACCACGATGAAAAAAAAAACGCAAA
TCAGTTCAATTTTCGGAAGTGAACCTCAGAACGTTCCACGTGTTTGCAAA
CCCGAGAGTACGCACGGTTGGTGGGTCCAGTGGTGGGGGGAGAGGAGAAA
CAACACCCAAATGGCTAAATATAGTAGAAAATTCCCTGAACTCGCTTGCT
CGACCAGGCCATAGATAGCTCCACTGACTTTTTTGGCGCGGGGGCTCCGT
GCGACCAACAGGCACGTCCGTCATCTACCAGCCGGCGGCCGCCGTGGCGA
ACACGACGACCGGGAGCTTGAGAGCCGTGGGAGAAGGGGGCCCGCACGAC
CCACAGGAGGGGGGACGGCGGCTGGAAACGGGGTTGTGCGTGAGGGTAGA
CGACTCGGCCTGGTCGCGCCCCCTGAACATAGCCGTGCAAGGGGCTGGGG
GGCCGTTTCAGGTACGCCGTGCTCATCCAAGCACCTTTACAGGTGCACCG
TATCATGCCAATTCAAAGTTCATTGGGAGGTACACAGCAGTAGTAGGGAA
CGTTTACACTCAGGGTACATCTGGACGTTGTAAGTTTGCACCCTCTCATA
TATTCATTATAATTCTTTAAAGTTTCACCACTCACTTTCATTTACTGCAC
CGCACCCTTATTCGTTAGAGTACCTTTAAAGGCACACCGTGTTCCTTAGA
GCACACCTTTACAAACAATGGTTGTTTTTTCGTCGGCCCACGAGAGTCGT
GATCTTGTTGCCTTTTATTCGGGGCCAGTGTTGTCGAGCTCCTCTCTGTT
TCAGTACAACATCTAACAGGTAAATCAGCCAGTGACCACGAGATCGACCG
CATGATGCTCTGGATTAGTATTTGCGTGGACAGAGGAGGGTACACACGGA
GCACAGATATCGGGTATACCTTATATTGACTAATCAGCCTGTGACCAAGG
GATCAACCGCGCCATGCCTTGGATTAGCATTTGCGTGGACAGAGGAGGGT
ACACACAGAGACCGGGAATACCTCATATAGGTAGATCAGTCTGTGACCTC
GGGATCGACCGCATGATACTTTGATGAGTATTTACGTGGACAGAGGAGGG
TACACGCTGAGCACAGAGATCGGGTATACCTTCTATAGGTCAGTCAGCCT
GTGACCACGGGATCGACCGCACTATGCGTTGGATAAGTAAGGGCATACCA
TGAAGGTAAATATGGTATGTAGCGAGATCGTGACGGTTTCAATGTGATAA
CATTATGTACCTTTTGTCGCGAGGTGGGGATGGACGTCTCCAACAAAAGG
CCGCTTCCATGGGTAGGGCGCTGAGTGTAGGATGCGGTACCCGGCGTGTG
CAAAAAAACGGCAGCGCTTGCCGGTACTGCCGCGCGTCTGCGCAACCCCA
TCGTCGCTTTGGGTCGTCATTTTCATCACCATCGCCATCAGCAGCAGCAG
CAGTAGCAGCGGGATCGACGGCCAAAAAACAACACTAGCTATGTAATCAG
CAAGCTGCTCACGGCAAGAACCCGACACGGAACCCCCCGGCATTGTAGGC
GGGTGTGGGGAGCCTCGACTCTCGATAGCTCTCTTCCCTCTACCTGGCGT
GGTACTTGTTTTTTCTAGCTTTATTTCATTTTATTTTCCCAGTGGTATGT
ACCTACGTTCTGTGTTTTTAGTAACAGCGAGACGCAAGACCCCTCCGGGA
GTCAGTTTAGTATCGCCTGGCTCGTATGTATCATAATTTCGGTGTACTTG
TCTCCAGCGGCGTCGAGTGTGCCCTGTGTTTGTGGCCACGGGCCCCATGG
ATGTTTTGGGCTAGAGAGCTAATGTGAGAAACAACAACAACAACAACAAC
AACAACAGACAACGACAGCAATAACAACAACAACAACTAACATCGGCTCT
CCCCTTCCACGCAAAACACTGAAAACCCTCTAATAAAACCCAACCTTTCT
GTTCCAGGTTCCCGGAGGCCGCTGGCCGAGGCTAAGACGACCGGCGCCCG
TCATTAACGCAGCCGAGCTTCGGAAGTCCATCCAGCGAAGGGGCCATCGC
AGCCCAAGCCCGAGTTCCGGAATCGGTTCCGGGACCGGTTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig656:31745..34738+

>mRNA_L-elsbetiae_contig656.15260.1 ID=mRNA_L-elsbetiae_contig656.15260.1|Name=mRNA_L-elsbetiae_contig656.15260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig656:31745..34738+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGCAGGACTCATTGGTCTCCAAGCCGGCAGGGGCAGGGGCAGGACT
CATTGGTCTCCAAGCCGGCAGGGGGCACGTCCGTCATCTACCAGCCGGCG
GCCGCCGTGGCGAACACGACGACCGGGAGCTTGAGAGCCGTGGGAGAAGG
GGGCCCGCACGACCCACAGGAGGGGGGACGGCGGCTGGAAACGGGGTTGT
GCGTGAGGGTAGACGACTCGGCCTGGTCGCGCCCCCTGAACATAGCCGTG
CAAGGGGCTGGGGGGCCGTTTCAGGCACGTCCGTCATCTACCAGCCGGCG
GCCGCCGTGGCGAACACGACGACCGGGAGCTTGAGAGCCGTGGGAGAAGG
GGGCCCGCACGACCCACAGGAGGGGGGACGGCGGCTGGAAACGGGGTTGT
GCGTGAGGGTAGACGACTCGGCCTGGTCGCGCCCCCTGAACATAGCCGTG
CAAGGGGCTGGGGGGCCGTTTCAGGTTCCCGGAGGCCGCTGGCCGAGGCT
AAGACGACCGGCGCCCGTCATTAACGCAGCCGAGCTTCGGAAGTCCATCC
AGCGAAGGGGCCATCGCAGCCCAAGCCCGAGTTCCGGAATCGGTTCCGGG
ACCGGTTCGGTTCCCGGAGGCCGCTGGCCGAGGCTAAGACGACCGGCGCC
CGTCATTAACGCAGCCGAGCTTCGGAAGTCCATCCAGCGAAGGGGCCATC
GCAGCCCAAGCCCGAGTTCCGGAATCGGTTCCGGGACCGGTTCG
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