mRNA_L-elsbetiae_contig6543.15243.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6543.15243.1 vs. uniprot
Match: D7G2X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X1_ECTSI) HSP 1 Score: 941 bits (2431), Expect = 2.820e-303 Identity = 508/799 (63.58%), Postives = 584/799 (73.09%), Query Frame = 1 Query: 283 MDVWALALGVDIDHSKAADRARRKVELEEAGCNVQPGGWTPSVPPTTAPNQSSLGTQRRKRGRDALEGLARSRRSPVVPEVTALDGFLSDLQQRLKSVEGGAVRSRRTAVPTPASSRAAAMAGDGGQHSGAGVVSSASLADVYGIPQRFVANAEEARRRWDGHNANLEQRDEEFLERYKRSALMSGVQVSIAKAWRGFVYRRKFLAWKGRRQWSTKRHLLAWCLAHRAERFYSGNLKRSIFAHWSEIVEEDRNARVMGELSFQAAVSSTRLSRQAVVQFFQDLTPSPDDLSPAVLRNKASVKRRILKILFQSWRDAANWKQKAAAQAAFKMCKAVRLHTASAMLWAPEIVSLLFKVWSRMTIYKKAVREEREPPTFLPEDGYTSLPEWDAWVSNKGRHLEMKRKVMHIGGQ---------------------------------------------------IFIRNKFRRWVWFAKWSLSQEDRVLEASQQHYDAMEMSKTFVAWAGVCRDRGSMLRRITRCWQGWSSFTRRKKKTSTLKKKTVEHVRLLRTGSVMHDITAYARDGKVLSAFTVSKLLLADKCFGGLALSYVTTGRVTQFFALLAWQAWKKYTSKRRRWKWLLYEHTKIEASHSKQAVFKAWSYATGRRHRPDAASLTLSASLPFSTWDRFVRNYVDQGVVPAEQLHKDMIDHSVMQQHTARWLFGQTGAG----DANFNA--PGPGAGEGSPGRPS-GRMELPQSRGSGSGALGKLTFPGAPGGKGPAATDWRALTPALFAAVDECDTAAVLDVRKR 2505 MDVWA ALGVDID SK+A+RARR+VELEEAG PG WT VP TT NQS L +RR R RDA G A RSPVVPEV AL+GFL+DLQ RL S+EGGAVR+ T V T +S AA AG GG + G SA LAD+YGIPQ F+ NAE+AR+ WD H+ANLE RDEEFL+RYKR A MSGVQVSIAK WRGFV+RRKF+AW+GRRQWS K HL AW + RA R YS NL RS+F+HW+E+VEE+RNARV+G+LSFQAAVSSTRLSRQAVVQ+FQD + DDLSPAV RNKASVKRRIL+ILFQ WRD AN K+KA AQA FKMCKAVRLHTAS MLWAPEI SLLF VWSRM +KKA+REE EPPTF PEDG+ LPEWD WVS +GRHL ++ +V G Q IF RNKFRRWVWF KWSLSQE R +EASQ H+D +++K F AWA VCRDRGSMLRR TRCWQGW FT +K + LKKKTVEH+RLLRTGSVM D+TAYARDGK+LS+FTVSKLLL K FG +AL YV TG++TQ F+LLAWQAWK+YT +RRRWKWLLYEHTK EA H++Q+VF+AWSYATGRR+RPDAASLTLSA+LPFSTWDR ++NYVDQGV+P EQLHKD++DHSVMQQ+TA WL GQ A D++ A G G E P R RMELP+S G G G+L+ G +GPAA DWR L PALF AVD+CD A V+D+ R Sbjct: 1 MDVWAQALGVDIDSSKSAERARRRVELEEAGLRTVPGAWTLPVPRTT--NQSLL-PRRRPRDRDAPGGAAGRARSPVVPEVDALEGFLTDLQGRLTSLEGGAVRNSSTVVSTRSS---AARAGHGGDVT-LGATPSAGLADIYGIPQAFIDNAEQARQHWDVHDANLEMRDEEFLQRYKRRARMSGVQVSIAKTWRGFVFRRKFMAWRGRRQWSIKLHLRAWRVTVRAHRLYSENLMRSVFSHWNELVEEERNARVVGQLSFQAAVSSTRLSRQAVVQYFQDTSTPSDDLSPAVRRNKASVKRRILQILFQGWRDTANHKRKAEAQAGFKMCKAVRLHTASNMLWAPEIASLLFHVWSRMVKFKKALREEMEPPTFPPEDGFKPLPEWDTWVSTRGRHLALELQVKKTGSQYCLLASDSVACLGWPIATGYPGFVRLHRGQWRRADSRPNDVAAAFAGLMAQIFTRNKFRRWVWFTKWSLSQEQREIEASQ-HHDVHKVTKVFAAWASVCRDRGSMLRRTTRCWQGWKRFTSSRKISKMLKKKTVEHIRLLRTGSVMSDVTAYARDGKILSSFTVSKLLLTTKFFGAMALGYVATGQITQLFSLLAWQAWKQYTVRRRRWKWLLYEHTKAEAFHARQSVFRAWSYATGRRYRPDAASLTLSAALPFSTWDRLLKNYVDQGVIPMEQLHKDLVDHSVMQQNTAWWLLGQDSAERPIRDSSSAAVLSGLGTSEEDPSRGGESRMELPKSGAGGGGVRGRLSRHGV--SEGPAAVDWRTLAPALFVAVDDCDEAEVMDLLHR 789
BLAST of mRNA_L-elsbetiae_contig6543.15243.1 vs. uniprot
Match: A0A835YQM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM2_9STRA) HSP 1 Score: 164 bits (416), Expect = 8.960e-38 Identity = 144/574 (25.09%), Postives = 234/574 (40.77%), Query Frame = 1 Query: 871 GFVYRRKFLAWKGRRQWSTKRHLLAWCLAHRAERFYSGNLKRSIFAHWSEIVEEDRNARVMGELSFQAAVSSTRLSRQAVVQFFQDL--TPSPDDLSPAVLRNKASVKRRILKILFQSWR-------------------------------DAANWKQKAAAQAAFKMCKAVRLHTASAMLWAPEIVSLLFKVWSRMTIYKKAVREEREPPTFLPEDGYTS--LPEWDAWVSNK------------------GRHLEMKRKVMHIGGQIFIRNKFRRWVWFAKWSLSQEDRVLEASQQHYDAMEMS---------------------------KTFVAWAGVCRDRGSMLRRITRCWQGWSSFTRRKKKTSTLKKKTVEHVRLLRTGSV---MHDIT--AYARD----GKVLSAFTVSKLLLA----------------DKCFGGLALSYVTTGRVTQFFALLAWQAWKKYTSKRRRWKWLLYEHTKIEASHSKQAVFKAWSYATGRRH--------RPDAASLTLSASLPFSTWDRFVRNYVDQGVVPAEQLHKDMIDHSVMQQHTARWLFGQ 2253 G+V+R++FL W+ RR+ AW A A+R ++ + R ++ E +E+ + + + +A +L+ AV FF++L T + VL RRIL++L W+ A ++ AA ++ + ++ H + + W+ E++ + F +W RM + A+R RE P F G T + D W + GR L+ K + GGQIF+RNKFRRW + +W ++ R+ A + + W CR +G M R + RC+ W + ++++ K ++HVR LR+ MH + A+ARD ++L A + A CF Y T R+ F WQAW++ +RRRWKWL YE ++ H + V +AW +ATG+R A + L A++PF T D+ + GV+P +QL +DM VM Q T++WL GQ Sbjct: 45 GYVHRQRFLTWRARRRQRRALFFRAWRAAVLADRLHARFILRKYWSLLKEALEDRQRMEKVLRAAVEATAGRHKLTFAAVNLFFRELERTEAHGARKEQVLLTHVGTGRRILRVLVDGWKARVHAAVVXXXXXXXXXXXXXXXXXXXXXXXXXARQRRSTAAALVLRVTRELQ-HASRMVAWSLELLLVGFHMWRRMAAFTAALRLGRELPNF----GKTPPCAKKRDKWAATTVEAHXXXXXXXXXXXXXTGRRLQRKHAINVKGGQIFLRNKFRRWAVYVRWCRARGQRMSAAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVLKGWHNTCRTKGQMQRVVQRCFAAWRRWAPLHQRSAAAKAAVLDHVRALRSERALLAMHRLASDAHARDQAAAARILDAPIFHVVAQAAXXXXXXXXXXXXXXXXXCFA----MYSDTDRLCAF---TCWQAWRRTAVQRRRWKWLQYEQRRVAGMHLCRTVLRAWYFATGQRPFQVVNGTLTASAGTPALLAAIPFGTLDKLC-TVLGHGVLPTKQLKRDMSSGGVMAQETSKWLLGQ 605 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6543.15243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6543.15243.1 >prot_L-elsbetiae_contig6543.15243.1 ID=prot_L-elsbetiae_contig6543.15243.1|Name=mRNA_L-elsbetiae_contig6543.15243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=837bp MPTSADPRRTLLDPWVDLSRGNTSHRKKIRACSSDGNDKHYPTYTNRDAQback to top mRNA from alignment at L-elsbetiae_contig6543:329..9246- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6543.15243.1 ID=mRNA_L-elsbetiae_contig6543.15243.1|Name=mRNA_L-elsbetiae_contig6543.15243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8918bp|location=Sequence derived from alignment at L-elsbetiae_contig6543:329..9246- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6543:329..9246- >mRNA_L-elsbetiae_contig6543.15243.1 ID=mRNA_L-elsbetiae_contig6543.15243.1|Name=mRNA_L-elsbetiae_contig6543.15243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5022bp|location=Sequence derived from alignment at L-elsbetiae_contig6543:329..9246- (Laminarionema elsbetiae ELsaHSoW15)back to top |