mRNA_L-elsbetiae_contig6526.15221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.630e-49 Identity = 131/303 (43.23%), Postives = 142/303 (46.86%), Query Frame = 1 Query: 7 DGGD-ACCAGGVAALGRVCSPTVGAPCSMVSDSAXXXXXXXXXXXXXXXXXXXXXXAETCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 DGG ACC GGV A GR CS T APC V C G I GI + D VCC SCGSC GTGC GG G+CC G+ A C +TG APC+ G T C G+ GI D CC SCG+CGG GCS RDGG ACC GGV A GR CS T APCM + XXXXXXXX +C G I GI + D VCC SCGSCGGTGC GG G+CC G R A CSVTG APC Sbjct: 76 DGGSGACCGGGVRASGRYCSVTGEAPCMTVP---------------------------MCDGGIVGIQASD--VCCSASCGSCAGTGCSGRDGGSGACC---GGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGS----GACCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXXTVEVP-----------MCDGGIVGIQTSD--VCCSTSCGSCGGTGCSGRDGGSGACCGGGVR---ASGRYCSVTGEAPC 326
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 182 bits (461), Expect = 6.150e-49 Identity = 140/303 (46.20%), Postives = 152/303 (50.17%), Query Frame = 1 Query: 7 DGG-DACCAGGVAALGRVCSPTVGAPCSMVSDSAXXXXXXXXXXXXXXXXXXXXXXAETCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 DGG ++CC GGV A GR CS T APC XXXXXXXXX C GDI GI S D VCC SCGSCGG+GC GG SCC G R A C +TG APC+ G T C + GI D CC SCGTCGG GC+GRDGG ++CC GGV A GR CS T APCM + A XXXXXXXX C G I GI + D VCC SCGSCGG+GC GG SCC G R A CSVTG APC Sbjct: 94 DGGSESCCGGGVRASGRYCSITGEAPCMT--------GPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSD--VCCSASCGSCGGSGCTERDGGSESCCGGGVR---ASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGS----ESCCGGGVRASGRYCSITGEAPCMTGAAPTPAXXXXXXXXXTVEVPK-----------CDGGIVGIQASD--VCCSLSCGSCGGSGCTGRDGGSESCCGGGVR---ASGRDCSVTGEAPC 363
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.860e-48 Identity = 134/310 (43.23%), Postives = 152/310 (49.03%), Query Frame = 1 Query: 7 DGG-DACCAGGVAALGRVCSPTVGAPC-------SMVSDSAXXXXXXXXXXXXXXXXXXXXXXAETCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 DGG DACC GGV A GR+CS T APC S XXXXXX C G I GI + + VCC SCGSCGG GC GG +CC G+ A C +TG APCI G T C G+ GI + CC SCG+CGG+GCSGRDGG DACC GGV A GR+C+ T APC+ + XXXXXXXX +C G I GI + D VCC SCGSC G+GC GGP +CC G R A CSVTG APC Sbjct: 169 DGGSDACCGGGVTASGRLCSVTGEAPCITGPAPTPAPSPPXTVEGPAPTLEPXXXXXXPPAGEVPMCDGGIVGIQAKE--VCCSASCGSCGGVGCSGRDGGSDACC---GGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGS----DACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEAP-----------MCDGGIIGIQTSD--VCCSASCGSCXGSGCSGRDGGPDACCGGGVR---ASGRFCSVTGEAPC 453
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.530e-47 Identity = 144/303 (47.52%), Postives = 159/303 (52.48%), Query Frame = 1 Query: 7 DGG-DACCAGGVAALGRVCSPTVGAPCSMVSDSAXXXXXXXXXXXXXXXXXXXXXXAETCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 DGG ++CC GGV A GR CS T APC M S + XXXXXXXXXXXXX C G I GI + D VCC SCGSCGG+GC GG SCC G R A C +TG APC+ G T C G+ GI D CC SCG+CGG GC+GRDGG ++CC GGV A GR CS T APCM + XXXXXXXX +C G I GI S D VCC SCGSCGG+GC GG SCC G RG CSVTG APC Sbjct: 107 DGGSESCCGGGVRASGRYCSVTGEAPC-MTSPAPTXXXXXXXXXXXXXEIPM-------CDGGIVGIQTSD--VCCSASCGSCGGSGCTGRDGGSESCCGGGVR---ASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGS----ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVP-----------MCDGGIVGIQSSD--VCCSASCGSCGGSGCSGRDGGSESCCGGGVRGS---GRYCSVTGEAPC 376
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 165 bits (418), Expect = 6.050e-46 Identity = 103/246 (41.87%), Postives = 115/246 (46.75%), Query Frame = 1 Query: 175 ETCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 ETC G I GI D + C SCGSCGGTGC GG +CC G R A C +TG APC+ G T C G+ GI D CC SCG+CGG GC+ RDGG +ACC GGV A GR CS T APCM ++ +C G I GI D VCC SCGSCGGTGC GG +CC G R A CSVTG APC Sbjct: 62 ETCDGGIVGIQQSD--ISCSSSCGSCGGTGCTSRDGGSEACCGGGVR---ASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGS----EACCGGGVRASGRYCSVTGEAPCMTNE----------------------------VPMCDGGIVGIQQSD--VCCSLSCGSCGGTGCTSRDGGSEACCGGGVR---ASGRDCSVTGEAPC 265
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.210e-45 Identity = 117/247 (47.37%), Postives = 126/247 (51.01%), Query Frame = 1 Query: 178 TCPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-------------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 TC G I GI S D VCC SCGSCGGTGC GG +CC G R + C +TG APCI G T C G+ GI D CC SCG+CGG GC+GRDGG EDACC GGV A GR CS T APCM + XXXXXXXX +C G I GI S D VCC SCGSCGGTGC GG +CC G R A CSVTG APC Sbjct: 52 TCDGGIVGIQSSD--VCCSLSCGSCGGTGCTGRDGGADACCGGGVR---SSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGG----EDACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVP-----------MCDGGIVGIQSSD--VCCSLSCGSCGGTGCTVRDGGADACCGGGVR---ASGRDCSVTGEAPC 273
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 163 bits (413), Expect = 8.570e-43 Identity = 101/244 (41.39%), Postives = 113/244 (46.31%), Query Frame = 1 Query: 181 CPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 C G I GI D +CC SCGSCGGTGC GG +CC G R A C +TG APC+ G T C G+ GI D CC CG+CGG GC+ RDGG +ACC GGV A GR CS T APCM ++ +C G I GI D VCC SCGSCGGTGC GG +CC G R A CSVTG APC Sbjct: 25 CDGGIVGIQQSD--ICCSSSCGSCGGTGCTSRDGGSEACCGGGVR---ASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGS----EACCGGGVRASGRYCSVTGEAPCMTNE----------------------------VPMCDGGIVGIQQSD--VCCSLSCGSCGGTGCTSRDGGSEACCGGGVR---ASGRDCSVTGEAPC 226
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 152 bits (384), Expect = 8.120e-40 Identity = 108/246 (43.90%), Postives = 121/246 (49.19%), Query Frame = 1 Query: 181 CPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRT-----------------CTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKR--GILAVQESCSVTGSAPC 861 C G IAGI + D VCC SCGSCGG+GC GG +CC G R A C +T APC+ G T C + GI D CC SCG+CGG GCSGRDGG DACC GGV A GR CS T APCM + + XXXXXXX +C G I GI + D VCC SCGS C GGP +CC G R G+L CSVTG APC Sbjct: 180 CEGGIAGIQASD--VCCSVSCGSCGGSGCSGRDGGSDACCGGGVR---ASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGS----DACCGGGVRASGRFCSVTGEAPCMTGPAPTTEPTXXXXXXXTVEVP-----------MCDGGIVGIQASD--VCCSASCGSXXXXXCTGRDGGPDACCGGGVRASGLL-----CSVTGEAPC 398
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: H6WBB4_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB4_VAULI) HSP 1 Score: 96.3 bits (238), Expect = 4.310e-19 Identity = 85/230 (36.96%), Postives = 109/230 (47.39%), Query Frame = 1 Query: 202 IMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCDLTGSAPCIIGQGRTCTAGVP-------GILDDDA---CCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMVSDSAVSADXXXXXXXXXXXXXXXXXXXXXVFEICPGDIPGIMSGDGRVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQESCSVTGSAPC 861 I G CC +CG+CGG GC PGG CC + +SC ++ + PCI + P G + D + CCP+ CGTCGG+GC R GG CC G V + C + PC ++ XXXXXXXXXXXXXX +CP GI+ G VCC +CG+CGG GC PGG +CC V +SC+ T + PC Sbjct: 178 IPDSSGMKCCPATCGACGGFGCDKRPGGAMMCCTGN------ITKSCSMS-APPCIASDDKPYPPMPPSSGKCPDGSIPDASGMKCCPMKCGTCGGLGCDMRPGGAAS----CCTGSVT---KTCDKSP-PPC------IAMGKPDEKXXXXXXXXXXXXXXMPPHGMCPKG--GIIDASGSVCCPATCGACGGAGCDKRPGGDINCCTS------KVTQSCA-TKTFPC 377
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Match: A0A7R9YY20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY20_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.940e-18 Identity = 53/133 (39.85%), Postives = 67/133 (50.38%), Query Frame = 1 Query: 181 CPGDIAGIMSGDGKVCCDRSCGSCGGTGCFHFPGGPGSCCIEGKRGILAVQES-CDLTGSAPCIIGQGRTCTAGVPGILDDDACCPLSCGTCGGIGCSGRDGGKFDGEDACCAGGVAALGRVCSSTVGAPCMV 576 C I G+ S +VCC SCG CGG+GC+ FPGG +CC G +A + C CI+ + C GV + D CC SCGTCGG GC R GG +CC GV + G VCS C++ Sbjct: 253 CYNGIEGVSSSGVEVCCASSCGQCGGSGCWQFPGGSANCCT----GAIASSDIVCSEFTDVGCIMPATQWCEYGV---ISGDICCAGSCGTCGGTGCGSRPGGW----SSCCGSGVTSSGNVCSDYSDIACII 374 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6526.15221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6526.15221.1 >prot_L-elsbetiae_contig6526.15221.1 ID=prot_L-elsbetiae_contig6526.15221.1|Name=mRNA_L-elsbetiae_contig6526.15221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp KFDGGDACCAGGVAALGRVCSPTVGAPCSMVSDSADSSDSSDSSDSSGSSback to top mRNA from alignment at L-elsbetiae_contig6526:6367..8687- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6526.15221.1 ID=mRNA_L-elsbetiae_contig6526.15221.1|Name=mRNA_L-elsbetiae_contig6526.15221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2321bp|location=Sequence derived from alignment at L-elsbetiae_contig6526:6367..8687- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6526:6367..8687- >mRNA_L-elsbetiae_contig6526.15221.1 ID=mRNA_L-elsbetiae_contig6526.15221.1|Name=mRNA_L-elsbetiae_contig6526.15221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig6526:6367..8687- (Laminarionema elsbetiae ELsaHSoW15)back to top |