mRNA_L-elsbetiae_contig6525.15219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6525.15219.1
Unique NamemRNA_L-elsbetiae_contig6525.15219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6525.15219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6525contigL-elsbetiae_contig6525:2794..5542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size609
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6525.15219.1prot_L-elsbetiae_contig6525.15219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6525 4690..5103 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.573912-UTR-L-elsbetiae_contig6525:2793..28621622816720.573912-UTR-L-elsbetiae_contig6525:2793..2862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 2794..2862 +
1691683764.2141593-UTR-L-elsbetiae_contig6525:2793..28621691683764.2141593-UTR-L-elsbetiae_contig6525:2793..2862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 2794..2862 +
1622816720.5842767-UTR-L-elsbetiae_contig6525:4635..46891622816720.5842767-UTR-L-elsbetiae_contig6525:4635..4689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 4636..4689 +
1691683764.2245514-UTR-L-elsbetiae_contig6525:4635..46891691683764.2245514-UTR-L-elsbetiae_contig6525:4635..4689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 4636..4689 +
1622816720.6094685-UTR-L-elsbetiae_contig6525:5103..51341622816720.6094685-UTR-L-elsbetiae_contig6525:5103..5134Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 5104..5134 +
1691683764.2427402-UTR-L-elsbetiae_contig6525:5103..51341691683764.2427402-UTR-L-elsbetiae_contig6525:5103..5134Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 5104..5134 +
1622816720.622611-UTR-L-elsbetiae_contig6525:5501..55421622816720.622611-UTR-L-elsbetiae_contig6525:5501..5542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 5502..5542 +
1691683764.2513871-UTR-L-elsbetiae_contig6525:5501..55421691683764.2513871-UTR-L-elsbetiae_contig6525:5501..5542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6525 5502..5542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.5976071-CDS-L-elsbetiae_contig6525:4689..51031622816720.5976071-CDS-L-elsbetiae_contig6525:4689..5103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 4690..5103 +
1691683764.2339044-CDS-L-elsbetiae_contig6525:4689..51031691683764.2339044-CDS-L-elsbetiae_contig6525:4689..5103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6525 4690..5103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6525.15219.1

>prot_L-elsbetiae_contig6525.15219.1 ID=prot_L-elsbetiae_contig6525.15219.1|Name=mRNA_L-elsbetiae_contig6525.15219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MIELCDAMKMYLRYRPVLGASREHSCTKAVSKLDEPPVMATTDAVMMTCK
AWIAAVASELKAATAVSFKTTGEERGRFASPTTPPDDSEGGGGTKGEPNS
KSSSSKRPRGRTMKKLKASLGTYFAGLGPDLGGDMWS*
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mRNA from alignment at L-elsbetiae_contig6525:2794..5542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6525.15219.1 ID=mRNA_L-elsbetiae_contig6525.15219.1|Name=mRNA_L-elsbetiae_contig6525.15219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2749bp|location=Sequence derived from alignment at L-elsbetiae_contig6525:2794..5542+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCCAATCTTTAGCCTCACCACCCTCAAGGCTGGCAAAGGCACTAATGT
GATCATCACCAACGATAAGGTGGGAATTAGTTTTTGAGGTGTCAGGGCGA
TGACTGCCGGGCTTTTCATCATCCCCAGAGCTGTGCCTGCTTGTGCTATG
GTTACTTTAGCCAGTGCGGGGATAGCTCTTCTTGTATTTGTTTTTGCGGT
ACAAGCTGGTTCATGCTGAATGCCCAGAATTTATTCCCAGGGATTTCCTC
ACGCCGTGTTTGCGAGTTAGACCACGAAATATTGCACACGTGTTCTGGAA
GGCATTATGTACCTAAAACTCCAAGAATGTTTTATTTTTATTTTTGGTTT
GTTGTCGAGATAGCCGGGATCTCCACACTCCACCACCCACCAAATAAAAA
GCCCCCCCCCACTAACTAACATCAACAAAAAAAAACAAACAAACAAACAA
ACAACCANNNNNNNNNNTACACACGTGTTTTGGAAAGCATTATGTACCTA
AAACTCCAAGAATGTTTTTTTTTTTTTTTTGGTTTGTTGTCGAGATAGCC
GGGATCCCCCCCCCCCCCCCCGGTCAAATAGGTCGACCGCGACCAAAGGA
TATCTCGACAACAAAATCGAAAACAAAAAAAGTACATTCTTGGAGTTTTA
GATAATGCCTTCCAAAACACGTCTGCAAAAATTCGTGTTCTACATACATA
ACTCGAAAAAACGGCGTGAGGAAATGCCAAAACGTGCGCTCAAGTATAAA
AACGCCTGCCTGCCCCCCCTAATCACTTGATTAAAGTATACTTTGGAATT
TTTTCAAGTTTTTTTCACGGCAAACGACCGCCCCGCGTCAGTCTTTTGAA
GTATCCAACCAAACTTGGTACGAATGTTCCTTGAGGAATTGCGGAACGAA
TAGACTTTTGTCTTTGCGGAAGAGGTAGTATGCACCGGCTTCCGCGGGTC
CTGAGGCAACGACCCCCGAAAGCCGGTCAAATATGCACCAACCAATCGCA
ACACCTCGAAAGTATTTTTTTCGTGTTTGCATTGTCGAAATCTATCAACA
TGCCAAGTTTCAGAACGATTGTATTCTTTTTCGGGGGGATATAAAGGAAA
CCGTTGTCTCTGGCTCTCCGGTCATTAATCCTACATACATTGGCAGGAGA
TTTGGCGTCGTCGTTACCGAAATATTATGTTCATGGGCATAACTCGATGC
CAGGACACCTGTTTTCAAAACTGTTTTTTAGGTTCCCTAGAGGACACCAG
TTGCTGTGATTATAGAGAACCTGGAGATTGAATAACATATTTGGTTGAAA
ATTCGTATTTTTAATTCTAGAGAGTTTGGAGTCTCTGATTGGCCGAAACT
ACGTTTCCGCCCATAGCTTCGCACCCAAGCCTTAACCCCGAAAAATAAAA
ATGTCGCCCTGTTGTGTCGCTAGTAGGAAACACTACGATATCATTTCTAT
AAAAAATGAGCTTGTATTGGATTCGTTATTAGTCGGGGAATTAATTCTGG
GCATTCAGCATGAACCTGCTTTTAGGTGTAGGTCGTGTGGAACGGCGAGG
CCTTAGCCGCGGCTTCGCCGTGGCGGGAGAGGATGCCATGAAGGTGTGCT
TGCGTGTGTTCGGCAACACAAAACTGCCGAAACAGGGTACCACAGCGTAG
GCACCAGGTACCGGTACGTGTATTGCCGTGTGCGAGAGCGTGACCACGTT
CTTTGGCGATGGTTGTGTTTCGTGGGCGCCAGTGTTTCCTGGCAAGGACC
TCAAGTTCGTGTCCTGCACAATCGACCCCGCAACATCGATGATCGCGTGC
CCCCCCCCCCCCATCCCATCTCGTGCGCTTTGCTCTATGCAGCGGTCAGA
CGCCGTGACGGTGAAAGCCCCCACTGAGGCAGAGCGCAAGGCTTGGATGA
TCGAGCTTTGCGACGCAATGAAAATGTACCTACGATATCGCCCTGTACTT
GGGGCTAGCCGAGAGCACTCCTGTACGAAGGCTGTTTCCAAGCTCGACGA
ACCACCCGTGATGGCTACGACGGACGCAGTCATGATGACTTGCAAGGCCT
GGATAGCGGCAGTCGCGTCAGAGTTGAAGGCTGCAACAGCGGTATCCTTC
AAGACCACTGGTGAAGAACGGGGTCGTTTCGCCTCGCCGACGACTCCACC
CGACGATTCTGAGGGAGGCGGGGGCACCAAGGGCGAGCCAAACTCCAAGT
CTTCCAGCAGCAAGAGACCGCGGGGGAGGACAATGAAAAAGCTTAAGGCT
AGCCTGGGGACCTACTTCGCAGGTCTCGGACCTGATTTGGGTGGAGACAT
GTGGTCCTAAGGGTGATTGGGAAGCGGAGATCTGGGCCTAGGTGAGGAGG
TACAATGCATCACTTCTTACGACTGTTTCGGTGCGTTGCGTTTGCTTTGC
TTCTGTACATATATAGCTGCAGCCTTTTTACACGCCCGAGCAGCTACAAC
GGGCTGCTCATGTAGGTGATGTACTGTATGTAGACGTTATGACCCATCAA
CCCAGGTGTGTGTACTGTCCACAATCGTCTAGTACGTTACGTGTTGGGCT
GTACTTTTCCGTGCCAGTCAGTCTTGTCTCTGCTCGATAGGCTTTGAAAC
ACAGGTACCCACCCGAGTTCTGAAGGCGGATACATAAGACATAATTTACT
GACTCGTGCTGTCCCGCTGTTTTTTTCTGCACAACCCTTCTGTGTGACCA
CGGATCAGAACTCTGCATGATGCCCTTCGAGCACTGGATTTACGTGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6525:2794..5542+

>mRNA_L-elsbetiae_contig6525.15219.1 ID=mRNA_L-elsbetiae_contig6525.15219.1|Name=mRNA_L-elsbetiae_contig6525.15219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig6525:2794..5542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGAGCTTTGCGACGCAATGAAAATGTACCTACGATATCGCCCTGT
ACTTGGGGCTAGCCGAGAGCACTCCTGTACGAAGGCTGTTTCCAAGCTCG
ACGAACCACCCGTGATGGCTACGACGGACGCAGTCATGATGACTTGCAAG
GCCTGGATAGCGGCAGTCGCGTCAGAGTTGAAGGCTGCAACAGCGGTATC
CTTCAAGACCACTGGTGAAGAACGGGGTCGTTTCGCCTCGCCGACGACTC
CACCCGACGATTCTGAGGGAGGCGGGGGCACCAAGGGCGAGCCAAACTCC
AAGTCTTCCAGCAGCAAGAGACCGCGGGGGAGGACAATGAAAAAGCTTAA
GGCTAGCCTGGGGACCTACTTCGCAGGTCTCGGACCTGATTTGGGTGGAG
ACATGTGGTCCTAAATGATCGAGCTTTGCGACGCAATGAAAATGTACCTA
CGATATCGCCCTGTACTTGGGGCTAGCCGAGAGCACTCCTGTACGAAGGC
TGTTTCCAAGCTCGACGAACCACCCGTGATGGCTACGACGGACGCAGTCA
TGATGACTTGCAAGGCCTGGATAGCGGCAGTCGCGTCAGAGTTGAAGGCT
GCAACAGCGGTATCCTTCAAGACCACTGGTGAAGAACGGGGTCGTTTCGC
CTCGCCGACGACTCCACCCGACGATTCTGAGGGAGGCGGGGGCACCAAGG
GCGAGCCAAACTCCAAGTCTTCCAGCAGCAAGAGACCGCGGGGGAGGACA
ATGAAAAAGCTTAAGGCTAGCCTGGGGACCTACTTCGCAGGTCTCGGACC
TGATTTGGGTGGAGACATGTGGTCCTAA
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