mRNA_L-elsbetiae_contig6470.15149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6470.15149.1
Unique NamemRNA_L-elsbetiae_contig6470.15149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6470.15149.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.630e-5
Identity = 23/35 (65.71%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    8 CTKGPSFGVSGTKKREFCSKHAKDGMVNLKSNRKC 112
            CTK P++GV+G+KKREFCS+HA+DGMVN+ +N++C
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNV-NNKRC 42
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BLAST of mRNA_L-elsbetiae_contig6470.15149.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.630e-5
Identity = 23/35 (65.71%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    8 CTKGPSFGVSGTKKREFCSKHAKDGMVNLKSNRKC 112
            CTK P++GV+G+KKREFCS+HA+DGMVN+ +N++C
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNV-NNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6470.15149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI3.630e-565.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE4.630e-565.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6470contigL-elsbetiae_contig6470:1189..2869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1091
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6470.15149.1prot_L-elsbetiae_contig6470.15149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6470 1271..1999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.4320612-UTR-L-elsbetiae_contig6470:1188..12701622816714.4320612-UTR-L-elsbetiae_contig6470:1188..1270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 1189..1270 +
1691683760.001115-UTR-L-elsbetiae_contig6470:1188..12701691683760.001115-UTR-L-elsbetiae_contig6470:1188..1270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 1189..1270 +
1622816714.4612627-UTR-L-elsbetiae_contig6470:1999..20341622816714.4612627-UTR-L-elsbetiae_contig6470:1999..2034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 2000..2034 +
1691683760.020802-UTR-L-elsbetiae_contig6470:1999..20341691683760.020802-UTR-L-elsbetiae_contig6470:1999..2034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 2000..2034 +
1622816714.4746816-UTR-L-elsbetiae_contig6470:2624..28691622816714.4746816-UTR-L-elsbetiae_contig6470:2624..2869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 2625..2869 +
1691683760.0376604-UTR-L-elsbetiae_contig6470:2624..28691691683760.0376604-UTR-L-elsbetiae_contig6470:2624..2869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6470 2625..2869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.4456706-CDS-L-elsbetiae_contig6470:1270..19991622816714.4456706-CDS-L-elsbetiae_contig6470:1270..1999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6470 1271..1999 +
1691683760.012067-CDS-L-elsbetiae_contig6470:1270..19991691683760.012067-CDS-L-elsbetiae_contig6470:1270..1999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6470 1271..1999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6470.15149.1

>prot_L-elsbetiae_contig6470.15149.1 ID=prot_L-elsbetiae_contig6470.15149.1|Name=mRNA_L-elsbetiae_contig6470.15149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MVNLKSNRKCAHPGCSKGPSYGVAGTKKREFCSDHVEGGMVQMMNTSVVR
SGVDAGGGGSVAPLTRPSSLTNTGRGGAIGNSMSGGASNRKSRAIRPRAP
TSSPGVPRAAEELVGRSTVRPNSSVDHRSRTTAVVKVEGVELSSSIVAGD
GSVEEGAAAPRVGEGRNKRRRRAPTSVTPANSDAISLGKSSGSRTRGKRA
RHTEDNDVVVLEDNDQAAEAAAAAGETASRRPGASVAIKPEQ*
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mRNA from alignment at L-elsbetiae_contig6470:1189..2869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6470.15149.1 ID=mRNA_L-elsbetiae_contig6470.15149.1|Name=mRNA_L-elsbetiae_contig6470.15149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1681bp|location=Sequence derived from alignment at L-elsbetiae_contig6470:1189..2869+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGGGGTGCACCAAGGGCCCGTCGTTTGGCGTATCGGGAACCAAGAAGA
GAGAGTTTTGCAGCAAACATGCCAAGGACGGGATGGTCAACCTCAAAAGT
AACAGGAAGTGCGCACACCCGGGTTGCAGCAAGGGTCCGTCTTATGGCGT
GGCGGGAACCAAGAAGAGAGAGTTCTGCAGCGATCATGTCGAGGGAGGAA
TGGTGCAAATGATGAACACAAGTGTGGTTCGAAGTGGTGTAGATGCCGGC
GGCGGTGGTTCAGTGGCCCCACTGACCCGCCCTTCCTCCCTGACGAATAC
AGGAAGGGGGGGCGCGATAGGCAACAGCATGTCCGGAGGGGCCAGCAATA
GGAAAAGCCGGGCCATCCGGCCTCGGGCGCCCACGTCATCTCCAGGAGTC
CCAAGGGCGGCCGAAGAGCTGGTCGGCCGTTCCACGGTTCGACCAAACTC
GTCCGTAGACCATCGTAGTAGAACCACCGCTGTGGTAAAAGTAGAGGGAG
TGGAGCTTTCATCCAGCATTGTCGCCGGTGATGGCTCGGTCGAGGAGGGC
GCAGCTGCACCCCGTGTAGGCGAGGGCAGAAACAAGCGAAGACGCCGGGC
TCCGACGTCAGTCACTCCGGCGAACTCCGATGCTATCTCATTGGGCAAGA
GCAGCGGCAGTCGAACGCGCGGCAAGCGAGCTCGCCACACTGAAGATAAT
GATGTCGTTGTCCTGGAAGACAACGACCAAGCGGCGGAGGCAGCAGCAGC
AGCCGGCGAGACGGCCAGCAGGAGGCCAGGGGCAAGTGTGGCAATCAAGC
CTGAACAGTAGACGGCCAATGCCTCATGCGGGTGTCCAACCTACAGGTGG
GCAGCAGTGTGTAGCCGAGTGTGTACGCGGCGGGGTGTGTGAACTCTGGA
TCGTCAATGACCGTAGCCATCATGGGGTTCCGCAGTTTTTTGTCTGGCTG
TTGTGCCATCGGCAAGGAGTAGGATGTGGCAGTAGGGCACACCAGGTTGC
AGCAGTATTGTATGCGGCTGCTTCTGTTGCACGGTAGTTGTCATCTTAGT
CATGCCGGCCAACTTTCCGCTACCTCCTTGCTCGACTCTGATCCTGTTTG
ATAGGGGCGGTATTCGTGGTAATACTGGCTGGGTATTCGTGGTACTACTG
GCTACCGTCCAGGAGTCCCCATTGGGCCGGAAGGGCCCATCCATTTTTTC
GACGGCCATTTCTGTGCGTCGATATATAGACTATATTCCCCTGATATTTT
GACCGTGTTCGAGTGATGTGAGGGCATGGGGGATGCATCGCTGCTGGAAT
GGGTACTGGTGCAAAGTATCGAGACACGCGCTATCTATCTGCAAGGTGCG
TGCCCGACTGACCCACCCTATATTTGTGTTGTCGTGTTGCCTCGACGGCC
GCGCCTCTTTTCGCTCCCTTGCTCGACGTGCCGTAGATCGAGATGCTCTC
CAAGAAGATCCAGGCTGGCATCATACCTTGCGTGAACTACAGGCAGGGCG
GCGGTGGCAGCGGGAGTAGTGGCGGTAGGTCAGGGCCCGCGACAAACCGG
GACGTCGCCGCGCCAGCCGCGCCGCTTCTGCCGCAGCAGCTCCGGAAAAG
AGCCCGGCCGCGAAAACGATCGAGGCGGGTGGGTTCCGCTGGCAGCACCA
GCAGCAGAACCACTTGCCGCTGACGCCGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6470:1189..2869+

>mRNA_L-elsbetiae_contig6470.15149.1 ID=mRNA_L-elsbetiae_contig6470.15149.1|Name=mRNA_L-elsbetiae_contig6470.15149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig6470:1189..2869+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACCTCAAAAGTAACAGGAAGTGCGCACACCCGGGTTGCAGCAA
GGGTCCGTCTTATGGCGTGGCGGGAACCAAGAAGAGAGAGTTCTGCAGCG
ATCATGTCGAGGGAGGAATGGTGCAAATGATGAACACAAGTGTGGTTCGA
AGTGGTGTAGATGCCGGCGGCGGTGGTTCAGTGGCCCCACTGACCCGCCC
TTCCTCCCTGACGAATACAGGAAGGGGGGGCGCGATAGGCAACAGCATGT
CCGGAGGGGCCAGCAATAGGAAAAGCCGGGCCATCCGGCCTCGGGCGCCC
ACGTCATCTCCAGGAGTCCCAAGGGCGGCCGAAGAGCTGGTCGGCCGTTC
CACGGTTCGACCAAACTCGTCCGTAGACCATCGTAGTAGAACCACCGCTG
TGGTAAAAGTAGAGGGAGTGGAGCTTTCATCCAGCATTGTCGCCGGTGAT
GGCTCGGTCGAGGAGGGCGCAGCTGCACCCCGTGTAGGCGAGGGCAGAAA
CAAGCGAAGACGCCGGGCTCCGACGTCAGTCACTCCGGCGAACTCCGATG
CTATCTCATTGGGCAAGAGCAGCGGCAGTCGAACGCGCGGCAAGCGAGCT
CGCCACACTGAAGATAATGATGTCGTTGTCCTGGAAGACAACGACCAAGC
GGCGGAGGCAGCAGCAGCAGCCGGCGAGACGGCCAGCAGGAGGCCAGGGG
CAAGTGTGGCAATCAAGCCTGAACAGTAGATGGTCAACCTCAAAAGTAAC
AGGAAGTGCGCACACCCGGGTTGCAGCAAGGGTCCGTCTTATGGCGTGGC
GGGAACCAAGAAGAGAGAGTTCTGCAGCGATCATGTCGAGGGAGGAATGG
TGCAAATGATGAACACAAGTGTGGTTCGAAGTGGTGTAGATGCCGGCGGC
GGTGGTTCAGTGGCCCCACTGACCCGCCCTTCCTCCCTGACGAATACAGG
AAGGGGGGGCGCGATAGGCAACAGCATGTCCGGAGGGGCCAGCAATAGGA
AAAGCCGGGCCATCCGGCCTCGGGCGCCCACGTCATCTCCAGGAGTCCCA
AGGGCGGCCGAAGAGCTGGTCGGCCGTTCCACGGTTCGACCAAACTCGTC
CGTAGACCATCGTAGTAGAACCACCGCTGTGGTAAAAGTAGAGGGAGTGG
AGCTTTCATCCAGCATTGTCGCCGGTGATGGCTCGGTCGAGGAGGGCGCA
GCTGCACCCCGTGTAGGCGAGGGCAGAAACAAGCGAAGACGCCGGGCTCC
GACGTCAGTCACTCCGGCGAACTCCGATGCTATCTCATTGGGCAAGAGCA
GCGGCAGTCGAACGCGCGGCAAGCGAGCTCGCCACACTGAAGATAATGAT
GTCGTTGTCCTGGAAGACAACGACCAAGCGGCGGAGGCAGCAGCAGCAGC
CGGCGAGACGGCCAGCAGGAGGCCAGGGGCAAGTGTGGCAATCAAGCCTG
AACAGTAG
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