mRNA_L-elsbetiae_contig6466.15142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6466.15142.1
Unique NamemRNA_L-elsbetiae_contig6466.15142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6466.15142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6466contigL-elsbetiae_contig6466:5024..5635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.467305-CDS-L-elsbetiae_contig6466:5023..54581622816713.467305-CDS-L-elsbetiae_contig6466:5023..5458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6466 5024..5458 +
1691683759.2757287-CDS-L-elsbetiae_contig6466:5023..54581691683759.2757287-CDS-L-elsbetiae_contig6466:5023..5458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6466 5024..5458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.480742-UTR-L-elsbetiae_contig6466:5458..56351622816713.480742-UTR-L-elsbetiae_contig6466:5458..5635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6466 5459..5635 +
1691683759.286916-UTR-L-elsbetiae_contig6466:5458..56351691683759.286916-UTR-L-elsbetiae_contig6466:5458..5635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6466 5459..5635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6466.15142.1prot_L-elsbetiae_contig6466.15142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6466 5024..5458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6466.15142.1

>prot_L-elsbetiae_contig6466.15142.1 ID=prot_L-elsbetiae_contig6466.15142.1|Name=mRNA_L-elsbetiae_contig6466.15142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
CFLHIKNRSDLSIQYLRTSVLIKHSTRSIPVVTGQRYRKQTRSFETTGKL
QQHYYNIHAYIRVQVFRTQHNTGPDANNTACTSLKSLNTHDPATHKLVRF
VRRLLDNSTRIRVCQKQPVAGTAIRHTKKRAVHALVIVSNRLDC*
back to top

mRNA from alignment at L-elsbetiae_contig6466:5024..5635+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6466.15142.1 ID=mRNA_L-elsbetiae_contig6466.15142.1|Name=mRNA_L-elsbetiae_contig6466.15142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6466:5024..5635+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTTCCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCCG
TACGTCCGTACTAATCAAACACTCGACGCGGTCGATTCCTGTGGTCACAG
GACAACGATACCGAAAACAAACAAGGTCTTTCGAAACAACTGGCAAATTG
CAACAACACTACTACAACATACATGCATACATACGTGTACAAGTCTTTCG
AACACAACACAATACTGGCCCAGATGCCAACAACACTGCGTGTACAAGTC
TTAAGTCTTTGAACACACACGACCCGGCAACACACAAGCTGGTACGCTTT
GTCCGTCGTCTTCTTGACAACAGCACCAGAATACGCGTGTGTCAAAAACA
ACCCGTTGCTGGCACAGCAATAAGGCACACCAAAAAAAGAGCCGTGCATG
CACTTGTCATTGTCAGCAATCGACTCGACTGCTGACCTGTGTGTCCCACG
GCAGTCTCATCGACACCTGAGTTTAAGTAATGTTCCACTCCGCTCATCCC
TCTCAAATCACGAGTCCAAAACCCAACTAAACACTAGCCGCCTCTCCCGG
CCATCCCAGGGGCCAGGGATGTCAACCTCCACCAGCCCCATCCGCGCACT
CCCTTCGCCTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6466:5024..5635+

>mRNA_L-elsbetiae_contig6466.15142.1 ID=mRNA_L-elsbetiae_contig6466.15142.1|Name=mRNA_L-elsbetiae_contig6466.15142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig6466:5024..5635+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTTCCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCCG
TACGTCCGTACTAATCAAACACTCGACGCGGTCGATTCCTGTGGTCACAG
GACAACGATACCGAAAACAAACAAGGTCTTTCGAAACAACTGGCAAATTG
CAACAACACTACTACAACATACATGCATACATACGTGTACAAGTCTTTCG
AACACAACACAATACTGGCCCAGATGCCAACAACACTGCGTGTACAAGTC
TTAAGTCTTTGAACACACACGACCCGGCAACACACAAGCTGGTACGCTTT
GTCCGTCGTCTTCTTGACAACAGCACCAGAATACGCGTGTGTCAAAAACA
ACCCGTTGCTGGCACAGCAATAAGGCACACCAAAAAAAGAGCCGTGCATG
CACTTGTCATTGTCAGCAATCGACTCGACTGCTGATGTTTCCTTCACATT
AAAAACCGTTCCGATCTCTCCATCCAGTACCTCCGTACGTCCGTACTAAT
CAAACACTCGACGCGGTCGATTCCTGTGGTCACAGGACAACGATACCGAA
AACAAACAAGGTCTTTCGAAACAACTGGCAAATTGCAACAACACTACTAC
AACATACATGCATACATACGTGTACAAGTCTTTCGAACACAACACAATAC
TGGCCCAGATGCCAACAACACTGCGTGTACAAGTCTTAAGTCTTTGAACA
CACACGACCCGGCAACACACAAGCTGGTACGCTTTGTCCGTCGTCTTCTT
GACAACAGCACCAGAATACGCGTGTGTCAAAAACAACCCGTTGCTGGCAC
AGCAATAAGGCACACCAAAAAAAGAGCCGTGCATGCACTTGTCATTGTCA
GCAATCGACTCGACTGCTGA
back to top