mRNA_L-elsbetiae_contig638.15046.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig638.15046.1
Unique NamemRNA_L-elsbetiae_contig638.15046.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig638.15046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig638contigL-elsbetiae_contig638:22558..23564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1007
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig638.15046.1prot_L-elsbetiae_contig638.15046.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig638 22612..23295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.963822-UTR-L-elsbetiae_contig638:22557..226111622816703.963822-UTR-L-elsbetiae_contig638:22557..22611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig638 22558..22611 +
1691683752.5515816-UTR-L-elsbetiae_contig638:22557..226111691683752.5515816-UTR-L-elsbetiae_contig638:22557..22611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig638 22558..22611 +
1622816703.9880736-UTR-L-elsbetiae_contig638:23295..235641622816703.9880736-UTR-L-elsbetiae_contig638:23295..23564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig638 23296..23564 +
1691683752.5812793-UTR-L-elsbetiae_contig638:23295..235641691683752.5812793-UTR-L-elsbetiae_contig638:23295..23564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig638 23296..23564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.9739375-CDS-L-elsbetiae_contig638:22611..232951622816703.9739375-CDS-L-elsbetiae_contig638:22611..23295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig638 22612..23295 +
1691683752.5625203-CDS-L-elsbetiae_contig638:22611..232951691683752.5625203-CDS-L-elsbetiae_contig638:22611..23295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig638 22612..23295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig638.15046.1

>prot_L-elsbetiae_contig638.15046.1 ID=prot_L-elsbetiae_contig638.15046.1|Name=mRNA_L-elsbetiae_contig638.15046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MYSEQPKKLGSPGIDTGCSCTQDTQIQENETPQPALLRQTADRPPNTPGF
ASYVRNLKHPRKLTLELGALSWVLSPVLTVFRHHTCYMHTKHSPPFVDTL
HNIKTLVLTLLSLAGLGAPIDRLIRSSPNLVRSYLAGPTLISLFFSLGYI
FSPNPRGKTKKKKTRTKHQKESAHRKSPLTPSRIQVNKKKRRNRQERQTR
HTHTRHKYMQEGGREREGMPKGGKRER*
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mRNA from alignment at L-elsbetiae_contig638:22558..23564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig638.15046.1 ID=mRNA_L-elsbetiae_contig638.15046.1|Name=mRNA_L-elsbetiae_contig638.15046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1007bp|location=Sequence derived from alignment at L-elsbetiae_contig638:22558..23564+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGAGACACCCAAATCAAGTCACGGCATGTTCTCCTGGTATTACTCCA
GCTTATGTACTCCGAGCAACCAAAAAAGCTGGGTTCGCCTGGTATAGATA
CAGGATGCAGCTGTACACAGGACACGCAAATACAGGAAAACGAAACGCCA
CAACCCGCCCTCCTGCGGCAGACAGCAGACAGGCCACCTAATACACCAGG
ATTTGCGTCGTATGTACGCAACCTAAAACACCCAAGGAAGCTAACACTAG
AGCTCGGTGCTCTGTCCTGGGTTCTCTCTCCGGTGCTCACCGTGTTCCGC
CACCATACATGCTATATGCACACAAAACATTCGCCGCCGTTCGTCGACAC
ACTGCACAACATCAAAACCTTGGTTTTGACTCTTCTGTCGCTTGCCGGCC
TGGGAGCACCCATCGATCGGCTCATCCGTTCATCGCCTAACCTCGTACGT
AGCTATTTAGCTGGCCCCACGCTGATTTCCTTGTTTTTTTCTCTCGGGTA
CATATTTTCGCCCAACCCGAGGGGAAAAACGAAAAAAAAAAAGACGCGCA
CGAAACACCAAAAAGAAAGTGCGCACCGTAAAAGCCCTTTAACCCCCTCA
AGAATACAGGTAAACAAAAAAAAACGCCGCAACAGGCAAGAAAGACAGAC
AAGACACACACACACAAGACACAAATACATGCAAGAGGGAGGCCGCGAAA
GAGAGGGGATGCCAAAGGGGGGGAAGAGAGAGAGATAATTGTAGCTGGAG
CTGATTGCTCGCGCCGCCAAGTCACTGACTGGTGCCTGCCGTCAACAAGC
TCGCCCTGGAACCCTCCTCCCCCGTCTCGCCTTTGTCTCCCTTTCCTTCC
AAATCATATATACCGATCCCACACCCTGAGTTACAACCCCCGCACCCCCC
CATCCGTGTTTTTTGTTTTGTACAACCTCCCCGGGACGCACGCGCGCACG
CTCTATACACTGTCAGTTACCGCCGTCTTGCCGGTTCCGAACTTTCGCTC
CCGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig638:22558..23564+

>mRNA_L-elsbetiae_contig638.15046.1 ID=mRNA_L-elsbetiae_contig638.15046.1|Name=mRNA_L-elsbetiae_contig638.15046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig638:22558..23564+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTCCGAGCAACCAAAAAAGCTGGGTTCGCCTGGTATAGATACAGG
ATGCAGCTGTACACAGGACACGCAAATACAGGAAAACGAAACGCCACAAC
CCGCCCTCCTGCGGCAGACAGCAGACAGGCCACCTAATACACCAGGATTT
GCGTCGTATGTACGCAACCTAAAACACCCAAGGAAGCTAACACTAGAGCT
CGGTGCTCTGTCCTGGGTTCTCTCTCCGGTGCTCACCGTGTTCCGCCACC
ATACATGCTATATGCACACAAAACATTCGCCGCCGTTCGTCGACACACTG
CACAACATCAAAACCTTGGTTTTGACTCTTCTGTCGCTTGCCGGCCTGGG
AGCACCCATCGATCGGCTCATCCGTTCATCGCCTAACCTCGTACGTAGCT
ATTTAGCTGGCCCCACGCTGATTTCCTTGTTTTTTTCTCTCGGGTACATA
TTTTCGCCCAACCCGAGGGGAAAAACGAAAAAAAAAAAGACGCGCACGAA
ACACCAAAAAGAAAGTGCGCACCGTAAAAGCCCTTTAACCCCCTCAAGAA
TACAGGTAAACAAAAAAAAACGCCGCAACAGGCAAGAAAGACAGACAAGA
CACACACACACAAGACACAAATACATGCAAGAGGGAGGCCGCGAAAGAGA
GGGGATGCCAAAGGGGGGGAAGAGAGAGAGATAAATGTACTCCGAGCAAC
CAAAAAAGCTGGGTTCGCCTGGTATAGATACAGGATGCAGCTGTACACAG
GACACGCAAATACAGGAAAACGAAACGCCACAACCCGCCCTCCTGCGGCA
GACAGCAGACAGGCCACCTAATACACCAGGATTTGCGTCGTATGTACGCA
ACCTAAAACACCCAAGGAAGCTAACACTAGAGCTCGGTGCTCTGTCCTGG
GTTCTCTCTCCGGTGCTCACCGTGTTCCGCCACCATACATGCTATATGCA
CACAAAACATTCGCCGCCGTTCGTCGACACACTGCACAACATCAAAACCT
TGGTTTTGACTCTTCTGTCGCTTGCCGGCCTGGGAGCACCCATCGATCGG
CTCATCCGTTCATCGCCTAACCTCGTACGTAGCTATTTAGCTGGCCCCAC
GCTGATTTCCTTGTTTTTTTCTCTCGGGTACATATTTTCGCCCAACCCGA
GGGGAAAAACGAAAAAAAAAAAGACGCGCACGAAACACCAAAAAGAAAGT
GCGCACCGTAAAAGCCCTTTAACCCCCTCAAGAATACAGGTAAACAAAAA
AAAACGCCGCAACAGGCAAGAAAGACAGACAAGACACACACACACAAGAC
ACAAATACATGCAAGAGGGAGGCCGCGAAAGAGAGGGGATGCCAAAGGGG
GGGAAGAGAGAGAGATAA
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