mRNA_L-elsbetiae_contig6344.15001.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6344.15001.1
Unique NamemRNA_L-elsbetiae_contig6344.15001.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 4.240e-81
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQET 381
            PAYHSKQ D NAQVCCGCA+LPLSTTVRGPAP AQPG+EDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQ+FAAPGQAGWHLGTLFPGGTS QET
Sbjct:    7 PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET 132
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.790e-65
Identity = 101/173 (58.38%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPG-QEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            PAYHSK    +    CGCA+LPL T +RGPAP    G QEDI++E L+YFRAN++FRN+ +E +ADRTLIYLTF+ QQCL+E+EK   K+ A+RAL  LA ++FAAPG+AGW LGT+FP      E E FK Y +QCREEL  R+ +RV+  DG++SK W  FSKR+FMGKEM
Sbjct:    2 PAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGDQEDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQAANRALNLLANKTFAAPGEAGWQLGTIFPAPRVRDEAEMFKAYFKQCREELGTRLIERVFA-DGTKSKWWQFFSKRRFMGKEM 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.160e-59
Identity = 90/172 (52.33%), Postives = 118/172 (68.60%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            P YHSK      Q  CGCA+LPL T VRGPAPP    ++D+++E + +FRANVLFRN++I+ SADRTLIYLT ++QQCLKE E+     E  +AL  LA++ FA PG   W +G+++P   S  E E  K Y +QCREEL +R    ++L DGS++K W  FSKRKFMGKE+
Sbjct:   12 PVYHSKFTGQEGQEMCGCALLPLKTRVRGPAPPMPEDEDDVIDETIKFFRANVLFRNFEIKNSADRTLIYLTLYLQQCLKECERAKTVGEGEKALQQLALRQFAIPGDTNWAMGSMYPAPKSTAEGEGCKAYFKQCREELGRRFSQVLFLPDGSKNKWWQAFSKRKFMGKEL 183
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A7S2FM28_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM28_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.400e-58
Identity = 83/172 (48.26%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            PAYHSK ND      CGC MLP+ TTVRG APP +   EDI++E L +FRAN+ FRN++++G ADRTL+YL+ ++ Q LKEL++   K +A++ L  L ++SF  PG+ GW LG +FP  TS  + + F+ Y +QC+ E+ +R+ + +YL DG+++K W +F+KRKFMGK +
Sbjct:   14 PAYHSKNNDYQGNEACGCLMLPIKTTVRGTAPPCEADDEDIIDETLKFFRANIFFRNFEVKGGADRTLLYLSLYVAQVLKELDRQNDKTQAAKDLHALEIKSFPVPGEQGWTLGGMFPNPTSPADADAFRAYFKQCKVEIGRRVLEILYLPDGTKNKWWNMFAKRKFMGKTL 185
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.650e-57
Identity = 91/172 (52.91%), Postives = 126/172 (73.26%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            PAYHSK  + +A   CGCA+LPL T+ RGPAP +  G+EDI++EALYYFRANVLFRNY+I+ +ADRTLIY+T ++   L+E ++     +ASR L   A+++FA PG+AGW LGTLFP      E+E FK Y +Q REE+++R+  ++Y + G ++K W +FSKRKFMG +M
Sbjct:   43 PAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGEEDILDEALYYFRANVLFRNYEIKSAADRTLIYMTLYVTMILRECDRIGSATDASRQLQLSAIRNFAVPGEAGWALGTLFPPPADRNESETFKAYFKQAREEMSERLIAKLYTDAG-KNKWWAMFSKRKFMGIDM 213
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A2D4BL79_PYTIN (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BL79_PYTIN)

HSP 1 Score: 186 bits (472), Expect = 2.300e-56
Identity = 90/172 (52.33%), Postives = 118/172 (68.60%), Query Frame = 1 
Query:    4 PAYHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            PAYHS  N+   Q  CGCA+LP+ T  RGPAPPA  GQ+DIV+E +  FRANVLF N++I+G+ADR L+Y T F+  CLK+L+K   K +A R L   A+ SFA PG +G+ LG L     +  E E  +GY++Q RE +A R+ + VY  DG+RSK WMLF+KRKFM KE+
Sbjct:    2 PAYHSSFNELPTQEACGCALLPIKTRARGPAPPAPEGQDDIVDEIIQLFRANVLFTNFEIKGNADRVLVYGTLFVHLCLKKLDKCASKTDAVRVLQQAAVDSFAIPGDSGFPLGGLVRAPANANEAETIRGYLKQLREAIAFRLPEEVYGADGTRSKWWMLFAKRKFMNKEL 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A7S4BNT7_CHRCT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNT7_CHRCT)

HSP 1 Score: 185 bits (469), Expect = 5.950e-56
Identity = 84/170 (49.41%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:   10 YHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            YHS  N  +A+  CG A+LP+ T VRGPAP A    +D+++E L++F+ANVLFR+++++G+ADR LIYLT +I QCLK+LE  P +  A +ALT++A +SF  PG AG+ LGT FP   + QE +  + Y++Q REE  +R+ D+VY EDG  SK W++F+KR+FM K +
Sbjct:    3 YHSSLNGVDAEAACGLAILPIKTAVRGPAPAAPAESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKALTSMAHESFLIPGDAGFALGTFFPSPQTSQEADLTRAYLKQLREETGRRLLDKVYGEDGQPSKFWLVFAKRRFMNKSV 172
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA)

HSP 1 Score: 181 bits (458), Expect = 3.220e-54
Identity = 83/171 (48.54%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:   10 YHSKQND-ANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            YHS  ND A+A+V CGC++LP+ TT RGPAP A  G++DI++E + +F+ANVLF++++++G ADR LIYLT +I QCLK+LE  P K EA + LT +A ++FA PG   + LG+ FP   S QE +  + YM+Q REE+ +R+  +VY +    SK W++F+KR+FM K++
Sbjct:    7 YHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGEDDIIDETIGFFKANVLFKHFEVKGPADRVLIYLTLYITQCLKKLEGAPSKMEALKTLTAMAHETFALPGDPAFPLGSFFPKPASSQEADLARAYMKQLREEMGRRLLTKVYGDSSEPSKFWLVFAKRRFMNKQL 177
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU)

HSP 1 Score: 179 bits (454), Expect = 1.140e-53
Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = 1 
Query:   10 YHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKEM 519
            YHS  N    +V CGCA+LPL T++RGPA  A  G+EDIV+E L YF+ANVLF++++++G+ADRTLIYLT +  QCLK LE  P + +  +ALT LA ++F+APG+  + L + FP G S  E +  + Y++Q REEL +R+  +VY ++G  SK W+ FSKRKFM K +
Sbjct:    4 YHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGEEDIVDETLGYFKANVLFKHFEVKGAADRTLIYLTLYTTQCLKRLETCPTQTDGVKALTALAHEAFSAPGEPRFALASFFPAGASPAELDLCRAYLKQAREELGRRLALKVYGDNGPPSKLWIAFSKRKFMNKAL 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Match: A0A0M0JZA5_9EUKA (Actin-related protein 2 3 complex subunit 3 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZA5_9EUKA)

HSP 1 Score: 189 bits (481), Expect = 1.450e-53
Identity = 89/169 (52.66%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:   10 YHSKQNDANAQVCCGCAMLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPGGTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMGKE 516
            YHS +ND  AQ  CGC++LP+ TT RGPAP A  G EDI++EAL +F+ANVLF++++++G  DR +IYLT +I QCL+ LEK P  +E  +ALT +A +SF  PG AG+ LG+ +P   S QE E  + Y RQ REE  +R+  +VY EDGS SK W++F+K+KFM KE
Sbjct:    3 YHSAKNDEEAQQACGCSILPIVTTTRGPAPLAPEGTEDIIDEALGFFKANVLFKHFEVKGGGDRVMIYLTLYITQCLQRLEKCPSPQEGIKALTAMAGESFKIPGDAGFALGSFYPTPASAQEAELCRSYFRQVREETGRRLITKVYGEDGSPSKFWLVFAKKKFMNKE 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6344.15001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G978_ECTSI4.240e-8194.44Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A835YQX6_9STRA1.790e-6558.38Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2RMH4_9STRA2.160e-5952.33Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S2FM28_9STRA3.400e-5848.26Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S1U2P7_9STRA2.650e-5752.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4BL79_PYTIN2.300e-5652.33Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]
A0A7S4BNT7_CHRCT5.950e-5649.41Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7S0Q1V8_9EUKA3.220e-5448.54Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
R1DRS6_EMIHU1.140e-5350.00Actin-related protein 2/3 complex subunit 3 n=3 Ta... [more]
A0A0M0JZA5_9EUKA1.450e-5352.66Actin-related protein 2 3 complex subunit 3 (Fragm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6344contigL-elsbetiae_contig6344:5684..10942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue4.2e-51
Seed eggNOG ortholog2880.D7G978
Preferred nameARPC3
KEGG rclassRC00002,RC00017
KEGG koko:K05756,ko:K07541,ko:K09680
KEGG ReactionR02971,R03018,R04391,R05919
KEGG Pathwayko00563,ko00770,ko01100,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00563,map00770,map01100,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005885,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0061850,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3155@1,KOG3155@2759
EC2.7.1.33
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit 3
Ec32 orthologEc-13_002920.1
Exons4
Model size690
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6344.15001.1prot_L-elsbetiae_contig6344.15001.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6344 5849..10882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.5569367-UTR-L-elsbetiae_contig6344:5683..58481622816700.5569367-UTR-L-elsbetiae_contig6344:5683..5848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6344 5684..5848 -
1691683750.1004047-UTR-L-elsbetiae_contig6344:5683..58481691683750.1004047-UTR-L-elsbetiae_contig6344:5683..5848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6344 5684..5848 -
1622816700.6200106-UTR-L-elsbetiae_contig6344:10882..109421622816700.6200106-UTR-L-elsbetiae_contig6344:10882..10942Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6344 10883..10942 -
1691683750.1577497-UTR-L-elsbetiae_contig6344:10882..109421691683750.1577497-UTR-L-elsbetiae_contig6344:10882..10942Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6344 10883..10942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.5713146-CDS-L-elsbetiae_contig6344:5848..59911622816700.5713146-CDS-L-elsbetiae_contig6344:5848..5991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 5849..5991 -
1691683750.1140003-CDS-L-elsbetiae_contig6344:5848..59911691683750.1140003-CDS-L-elsbetiae_contig6344:5848..5991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 5849..5991 -
1622816700.5839925-CDS-L-elsbetiae_contig6344:6729..68371622816700.5839925-CDS-L-elsbetiae_contig6344:6729..6837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 6730..6837 -
1691683750.1274993-CDS-L-elsbetiae_contig6344:6729..68371691683750.1274993-CDS-L-elsbetiae_contig6344:6729..6837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 6730..6837 -
1622816700.598535-CDS-L-elsbetiae_contig6344:7735..78971622816700.598535-CDS-L-elsbetiae_contig6344:7735..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 7736..7897 -
1691683750.1372054-CDS-L-elsbetiae_contig6344:7735..78971691683750.1372054-CDS-L-elsbetiae_contig6344:7735..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 7736..7897 -
1622816700.6099339-CDS-L-elsbetiae_contig6344:10830..108821622816700.6099339-CDS-L-elsbetiae_contig6344:10830..10882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 10831..10882 -
1691683750.1473062-CDS-L-elsbetiae_contig6344:10830..108821691683750.1473062-CDS-L-elsbetiae_contig6344:10830..10882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6344 10831..10882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6344.15001.1

>prot_L-elsbetiae_contig6344.15001.1 ID=prot_L-elsbetiae_contig6344.15001.1|Name=mRNA_L-elsbetiae_contig6344.15001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MLPLSTTVRGPAPPAQPGQEDIVEEALYYFRANVLFRNYQIEGSADRTLI
YLTFFIQQCLKELEKHPGKKEASRALTNLAMQSFAAPGQAGWHLGTLFPG
GTSGQETEQFKGYMRQCREELAKRMCDRVYLEDGSRSKHWMLFSKRKFMG
KEML*
back to top

mRNA from alignment at L-elsbetiae_contig6344:5684..10942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6344.15001.1 ID=mRNA_L-elsbetiae_contig6344.15001.1|Name=mRNA_L-elsbetiae_contig6344.15001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5259bp|location=Sequence derived from alignment at L-elsbetiae_contig6344:5684..10942- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCCGCGTACCACTCCAAGCAGAATGACGCGAACGCGCAGGTGTGCTG
CGGGTGCGCGATGCTGCCGCTGAGCACCACCGTCAGAGGACCGGCGCCGC
CGGCACAACCAGGTAAATAAAAAAAAAAGCAAACGCCTATTTTGTTTTTT
GAAGATGCCGGAACAGCAGGCAGGCTATCTACAATATATCCCTCGAACGA
ACGAATAATATAACAAACTTAGTCTCAGTATGGGTTAGGTTCCATTTTTC
AAACTATTTAACATTAACATTTAAGCTGTTCGTGGTGCTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTCCCCTCTTGCCCC
CTTTCTCCCCTCCTCCTCCCGTANNNNNNNNGTTTTTTTTTTTTTTGTTT
TTCTTTTTTTTTTTTTTTTTTTCTCTACCATTATTGGCTTATTCGTCGTC
TGCCCCACTGGCCCCCTTCCTCCACTACGACTACCGTACGTGACACAAGA
TACCACAACCCCTGGACCTGGACCGAATTTCTTGAGCTCCATGACTCCGT
AACGAAGAAGGTGTCAGCCAACACCAAACGAAACATTTTCGGACAGCCCT
CGGCTAGATTTTTTCCAACGCTACCCTTTTTGGCACTGGCACTCTTCTTG
CCGGGGAGGAATCGATCTTTGAAAACCTTCCCAGGGGGTGTGGTATCTTG
TGTCGCCTACGGTAACCCCCTCTTGTGTCGCCGAGATAGTAGAAGTGCTC
CCCCCGCTCCCCGCCCGCCGCACTCTCCACCGACCCCCCCCACCCCCCAG
CGAGTAGAGCACACGAACAAGAAGAGCGTATGTTTACCGTATACCATGAC
ACAAGATAACACACCCCCTGGACCGATTTTGAAAGCTCAAGAGTAATACA
CTCCACAGCGAGAAGAAGTGTGTCAGTCCCGAAAAGAACCACAGCGCCGT
TGGAAATATGAAATACAAATATCTCATCAAGAGCTGTCCGAAAACATGTA
TTTTGGTGGTAAATAGAACCATACTCGTTGCGGGGTATTTAGCATTACCT
TGAAGGCGCTTTCAAGAAAAAGCGGGGATACCGAAAATTCTCACGGGAGT
CCCGTCTCCAATGTGGGTTAGGTTCCATTTTTGAGTATCTGCTCATCTTT
CAAAGCGGGGGCGCGTGAGCGGCCAAACCTTGTAGAACCACACTCGTTGC
GGGGTAACCGAGCTTTGAAAACCGGTCTTTTGGTGGTAGAACCATAACGT
AGGTGACACAAGATACCACACCCCCTGGAAAGATTTTCGAAGCCCGATTC
CTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGGGGTGGCGTTGGAAA
AAGATCTAGTCCAGGGCTATCCGAAAATGTGTCGTTTGGTGTGCTGGCAC
CCTCTTCGTTACGGAGTAATGGGGCTCTAAAATTCGGTCCAGGGGGTGTG
GTATCTTGCGTCACCTACGGTACTCGTTGCGGGGTATTTAGCATTACGTT
GAAGGCGCTTTCAAGAAAGCGGGGGCGCGTGAGCGGCCAAACCTTGTAGA
ACCATACTCATTGCGGAGTAACCGAGCTTTGAAAACCGGTCCAGGGGGGT
GTTATCTTCCGTCGTTCATAATACAAAGTATACTTGACAGTCCCGCTGAC
AGTCCGTAATAGAACCATACTCATTGCGGGGTAACCGAGCTTTGAAAACC
GGTCCAGGGGGTGCGTTATCTCGCGCGTCGTATACGGTAGTAGGCTCTGA
AAACATCGCATGTACCGTAGGTGACATAAGATAAGACACCCCCTGGACCG
ATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGCGTCGGTCCCGAAAA
GGGCGGCGTTGGAAAGGTCTCGCCGAGAGCTTTCCGAAAATGTGGCGTTT
GTGGTTGGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAGTATCGGTC
CAGGGGGTGTCTTATCTTATGTCACCTACGGTAGTACATCCATACTTCCG
GGCATAGCTACCGTAGGTGACACAAGATACCACACCCTCTGAGCCGAATT
TTAGAGCTCCATTGCTCCGTAACGAAGAAGGTGCCAGCACCAAACGACAT
ATCTTCGGACAGCCCTCGACTAGATCTTTCCAACGCACCCCCTTTCGGCA
CTGGTGCTCTTCTCGCTCGGGAGGAATCGAGCTTTGAAAATATGTCCAGG
GGGTGTGGTATCTTGTGTCACCTACGGTACCCGACTGTGCAGCCCGCGTC
CGTACGCAAGCCCTGGTGTATACTCTAGCTTTTACACCAGCGGAGTAATA
AACCCAGGCTTCAGTTGGAGGTAGACGCTAAAAACAAGGCCTACGCTAGG
TTTCCAGGCCCTCTTGCTTCACACGCACCCTACCGTAGGTGACACAAGAT
ACCACACCCCCTGGACCGACTTTTGGGGTTCTACTACTCCGTAGCGAAGA
GAGTGCCAGCACCAAACGGCACATTTTCGGACAGCCCTCGACTAGATCTT
TCCAACGTCACCCCCTTAAGGCACTGGCGCTCTTGTTGCTGGGGGGGAAT
CGAGCTTTGAAAATATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGG
TAACCGCCCTAAACCCTATGCCCTAACCCTAGCCCTAACCCACACCCACC
CACCAGGCTAGGTTGGTGTGCCGGGTTTAACCCACACACACACACCAGGC
TAAATAGGTTGGTGAGCCGGGTTTAAGGCCTAAGTGTGGCTGTACCTAGC
TACATACTGGTGTTTATATACCATATAAGACTTGACCCCAGGGCTGGTAG
TATATACGTGCTGCGCCCGACTGTGTCCCGCGGAATCACGGACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACAAAAAAACACAACCC
CCCGTTTTTTCTCCCCCCCCCCCAACNNNNNNNNNNCCCGCGGACCCCCC
GCCCCCCCCCCCCCCCCCCCTTCCCTCGTACTCCTCCCCGACGAAAAACA
AAAATCGAATCCTGCTGTTTTTCATCCACATCCACAAACAAGCAGGCCAA
GAAGACATCGTGGAGGAGGCGCTCTACTACTTCCGGGCGAACGTTCTTTT
CCGCAACTACCAGATCGAGGGATCCGCAGACCGGACGCTTATCTACCTCA
CGTTCTTCATCCAGCAGTGCCTCAAGGAGCTGGAGAAACACCCCGGCAAG
AAGGAAGGTGTGATTCACGGTACCCCTGTGTGTGTGTGTGTGTGTGGAGG
GGCGGGGGGCAGAGGCACCGCGGAGGAGTGAGATATTGTAGGGGGTGGGG
GGTGGGGGGGCATGACGTTGCTGAAGCAGCCGTGGTTGTAGTGGGGCTCC
GTGGCTCGATAGAAGCACCCCCAGAGCGAACAGGGAGAGGTAGAATATTT
TGCACCGCAGAGGATTGGGAGAGCGGGGGGGGGGGGGGGGCGGGGGGGCG
TTGGTGGAGCGTTACGTCGGCGTCTTTGTGTGTTGTCGGCGTCCCCACGG
TTNNNNNNNNNNCCGGGGGGCATGGGGGTGCGTGGTGCCGGGGGGGGGGG
GGGGGGGGGGGGGGGGGCATCGATTTATTGACTTGAGCCGCTGCGTTCCG
GTGGCAGTTTGTTGTGGCTCCGTATTCTGTTTATTTGTTTAATCCTCTTG
TAATTTGTGGTACATATGGTGATAGATTGCTCTGCCCGGGGCATCGCGCG
TACCAATTTTATTTTTATTTTGCTCCACATACATTAGACTCATGACGACA
CCGGTTGGACCGGAACACCAAGAAGATAAAACCTCAACGGCACTACATAA
AAAATCGTTCTAATCCAAATGCCGTCGCTTTACATTCGGACGAGCCCGCA
GGTAGGCAGCGCCTGGGACCTGAGTCGTTGCCCGGCAAGTTCCCGCTAGG
CTCTCCCGTACTGTTATTCTGTTGTGGCTCCGTATTCTCTTCTGATGTGT
GATACACATATGGTGATGATAGATACGCACACGCACACGCACACGCACAC
GCACACACGCCACCTTCCTCCTCCGCCAAGTCTGACTTTTTTTTTGCCGG
CCCTGCCCTCCTCCCCACCTCCCGCGGCCGCCTCTGCGTCAACGTCGCTA
TGTAGCATCGCGAGCGTTGACGAACCTGGCGATGCAGAGCTTCGCGGCCC
CGGGGCAAGCGGGGTGGCACCTGGGCACGCTCTTCCCGGGGGGCACCTCC
GGACAGGAAACGGGTGAGAATTGTACTTTTTATTTATTTATTAATTTTTT
TATCCCATTATTTGGGTCCATTTTATTTTTCTTGTACCTTTTCTCTTTTC
TTGGGTACAAGTTAAGCCTGTGACCACGGGAATTGACCGCATCAAGTGTT
GGATTAGTACGGACATTGAGAGGTACTGGATGAGGAGATCGGAACGGTTT
TTAATGTGAAGACAACTACAACATACATACATACATACATACATTATTTG
CACATATTCGTCGTTTTTGCCCCACTGGGCCCCCATACTCTCTACTACGA
CTAGCTAGACGACAAAACCGGGGCCACAAAGTACCTTGTCTTTGCGGGTG
AGGACTGTTATTCATTTATTTATTGTTTATTTATTTTTCTTCCCATTATT
GGCTTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTACC
TAGACGACCCAACCGGGCTCACACAAGGTGGGCCCCCTCCTGCGGTGTAC
GTGGTTATTTGTATTTGTTTCCTATTGTTTAGTATGAAACCTCATCCTGC
CCTGCTATATTCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCACCCCCTCACCCCGGCCAACGGGACGCGCGAGCCAG
CAGGNNNNNNNNNNTTTTTAATTTTCAACCCTCCCCCCCCCCTACAACAC
CCCCCCCCCCCCCCCCCCCCCTCCCTCCACCCCTCCCGGCAACAAACGCA
GAGCAATTCAAGGGGTACATGCGGCAGTGCCGAGAAGAGCTGGCGAAGCG
AATGTGCGACCGGGTGTACCTAGAGGACGGGTCGAGGAGCAAGCACTGGA
TGCTCTTCAGCAAGAGAAAGTTCATGGGCAAGGAGATGCTCTGATTCTGA
CACTCCCGCTGACAGTCCCGTGGTTGTTGTCTGGTGTGCGACCGGGTGTA
CCTGGAGGACGGGTCGAGGAGCAAGGACACTGGATTGGATGCTCTCTTCA
GCATGAGAAAGTTTCGTGCGCAAGGAGATACTCTGATTGACAGTCCCGCT
GACAGTCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6344:5684..10942-

>mRNA_L-elsbetiae_contig6344.15001.1 ID=mRNA_L-elsbetiae_contig6344.15001.1|Name=mRNA_L-elsbetiae_contig6344.15001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig6344:5684..10942- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCCGCTGAGCACCACCGTCAGAGGACCGGCGCCGCCGGCACAACC
AGATGCTGCCGCTGAGCACCACCGTCAGAGGACCGGCGCCGCCGGCACAA
CCAGGCCAAGAAGACATCGTGGAGGAGGCGCTCTACTACTTCCGGGCGAA
CGTTCTTTTCCGCAACTACCAGATCGAGGGATCCGCAGACCGGACGCTTA
TCTACCTCACGTTCTTCATCCAGCAGTGCCTCAAGGAGCTGGAGAAACAC
CCCGGCAAGAAGGAAGGCCAAGAAGACATCGTGGAGGAGGCGCTCTACTA
CTTCCGGGCGAACGTTCTTTTCCGCAACTACCAGATCGAGGGATCCGCAG
ACCGGACGCTTATCTACCTCACGTTCTTCATCCAGCAGTGCCTCAAGGAG
CTGGAGAAACACCCCGGCAAGAAGGAAGCATCGCGAGCGTTGACGAACCT
GGCGATGCAGAGCTTCGCGGCCCCGGGGCAAGCGGGGTGGCACCTGGGCA
CGCTCTTCCCGGGGGGCACCTCCGGACAGGAAACGGCATCGCGAGCGTTG
ACGAACCTGGCGATGCAGAGCTTCGCGGCCCCGGGGCAAGCGGGGTGGCA
CCTGGGCACGCTCTTCCCGGGGGGCACCTCCGGACAGGAAACGGAGCAAT
TCAAGGGGTACATGCGGCAGTGCCGAGAAGAGCTGGCGAAGCGAATGTGC
GACCGGGTGTACCTAGAGGACGGGTCGAGGAGCAAGCACTGGATGCTCTT
CAGCAAGAGAAAGTTCATGGGCAAGGAGATGCTCTGAAGCAATTCAAGGG
GTACATGCGGCAGTGCCGAGAAGAGCTGGCGAAGCGAATGTGCGACCGGG
TGTACCTAGAGGACGGGTCGAGGAGCAAGCACTGGATGCTCTTCAGCAAG
AGAAAGTTCATGGGCAAGGAGATGCTCTGA
back to top