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Homology
BLAST of mRNA_L-elsbetiae_contig632.14965.1 vs. uniprot
Match: D7FZS2_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS2_ECTSI) HSP 1 Score: 258 bits (660), Expect = 5.770e-78 Identity = 182/368 (49.46%), Postives = 214/368 (58.15%), Query Frame = 1
Query: 121 IAAVLARGHSIVKEGESATQGASAALPSAPWHTAIFAQVRLGAARQRKLDAVAAAREETYAKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYAETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDRXXXXXXXGLSQGESRVTSEGSLSTSRESTGDDXXXXXXXXXXXXXXXXVADEGATAVWLGEESAAAEGXXXXXXXXXXXFAEGGHAPTAARRGRGXXXXXXXXXRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRSRGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQ-RSKTLNWKERREW 1221
+AAVLA+ +S++KEGE AT+GASAALP APWH IFAQVRL ARQRKL V+ ARE YA+YANIYKDHAA Y R IEASRQ+RGGLEAYRRRVV ASTDAERYRGY E TPRD E E+G L LL D GS + +AS N R G S S + SLS+ +E D D A +G+ E + A T G RG FVDVVPFNNIRAKYLRPW+DTELS PYHV PSP W A A G+ S SS+G S TST+ +AAGSG+T+EAY +T + +P TH+ RS+TLNWK+ +EW
Sbjct: 152 VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQVRLDTARQRKLHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPHWE--EDG------LGLLPADG---GSTSTNYAASSNGRESGSVA-GFSPSRSSANVDVSLSSEKE----DGAGRGLVHGDETARRWPVDRAAPECSMGD---GGEPEAPAVSRLDSVTDDENTATTRRSFDHGGGGG-----RGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGTPSLASSVG--SSITSTD--AFSAAGSGQTLEAYRKTNLR-NPATHRPRSRTLNWKDGKEW 490
BLAST of mRNA_L-elsbetiae_contig632.14965.1 vs. uniprot
Match: A0A6H5KP45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP45_9PHAE) HSP 1 Score: 200 bits (509), Expect = 1.090e-57 Identity = 152/337 (45.10%), Postives = 182/337 (54.01%), Query Frame = 1
Query: 232 QVRLGAARQRKLDAVAAAREETYAKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYAETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDRXXXXXXXGLSQGESRVTSEGSLSTSRESTGDDXXXXXXXXXXXXXXXXVADEGATAVWLGEESAAAEGXXXXXXXXXXX------FAEGGHAPTAARRGRGXXXXXXXXXRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRSRGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQ-RSKTLNWKERREW 1221
QVRL ARQRKL V+ ARE Y++YANIYKDHAA+ Y R IEASRQ+RGGLEAYR RVV +S DA+RYRGY E TPRD E E+G L LL +D GS + +AS N R G S S + SLS+ +E + A EG+ GE A A F++GG RG FVDVVPFNNIRAKYLRPW+DTELS PYHV PSP W AG A G+ S SS+G S TST+ ++AA SG+ +EAY R A +P TH+ S TLNWK+ +EW
Sbjct: 7 QVRLETARQRKLHGVSVAREGVYSRYANIYKDHAAQTYARTIEASRQERGGLEAYRHRVVKSSMDAQRYRGYVEMDTPRDDPHWE--EDG------LGLLPAND---GSTSTNCAASSNGRKSGGVA-GFSPARSSAKVDVSLSSEKEDGAGEGLVHGDETVEVRPGDGAAPEGSVGE-NGESEARAVSRLDSVTDDENTATTRRSFSDGG-----------------IGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRAGRAVGAPSLASSVG--SSITSTD--ALSAAESGQALEAY-RKATLRNPATHRPHSSTLNWKDGKEW 308
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 264.2 |
| Seed ortholog evalue | 9.9e-68 |
| Seed eggNOG ortholog | 2880.D7FZS2 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-21_004140.1 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 1233 |
| Cds size | 1233 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816697.1958055-CDS-L-elsbetiae_contig632:20826..20919 | 1622816697.1958055-CDS-L-elsbetiae_contig632:20826..20919 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 20827..20919 + |
| 1691683747.6262608-CDS-L-elsbetiae_contig632:20826..20919 | 1691683747.6262608-CDS-L-elsbetiae_contig632:20826..20919 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 20827..20919 + |
| 1622816697.2095156-CDS-L-elsbetiae_contig632:21380..21521 | 1622816697.2095156-CDS-L-elsbetiae_contig632:21380..21521 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 21381..21521 + |
| 1691683747.6382565-CDS-L-elsbetiae_contig632:21380..21521 | 1691683747.6382565-CDS-L-elsbetiae_contig632:21380..21521 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 21381..21521 + |
| 1622816697.2214782-CDS-L-elsbetiae_contig632:22667..23666 | 1622816697.2214782-CDS-L-elsbetiae_contig632:22667..23666 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 22668..23666 + |
| 1691683747.656231-CDS-L-elsbetiae_contig632:22667..23666 | 1691683747.656231-CDS-L-elsbetiae_contig632:22667..23666 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig632 22668..23666 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig632.14965.1 >prot_L-elsbetiae_contig632.14965.1 ID=prot_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp
ADKGHLEVVKALLVGGAKADVLDHDHWSPRQSAEFRGFMEIAAVLARGHS
IVKEGESATQGASAALPSAPWHTAIFAQVRLGAARQRKLDAVAAAREETY
AKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYA
ETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDREG
SGGGAGLSQGESRVTSEGSLSTSRESTGDDSSTAPSAAAAGKGGGGVADE
GATAVWLGEESAAAEGPAAALASGGGGFAEGGHAPTAARRGRGGDGGDGG
GGRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRS
RGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQRSKTLN
WKERREWGAR* back to topmRNA from alignment at L-elsbetiae_contig632:20827..23666+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig632.14965.1 ID=mRNA_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2840bp|location=Sequence derived from alignment at L-elsbetiae_contig632:20827..23666+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGACAAAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGC
AAAGGCAGACGTGTTAGATCACGACCATTGGTCACCTCGCCAGGTAAGCA
AGCGACTGAACGCACATGCATACGCCTGTTCTTGTCCAAGAATGCACACC
CAGAGCTTTTTTCAGGGAGTGTATACCTCGACTTCGAACAACTGAACAAC
TTGCTTCTTGATCTGTTGTGGGCGCTGCGAACATTTCTTTCGGAACGCTG
AGAACACAAATTTGTGACGAAGCTGTTGCGCTGGCTGGCACCCGAGAGCT
CTAAGTCCCGCCATGTTTACGACTTTCAGTCCTACATGCTGATCCAAATT
CTGCACAGCTGGCACCCGAAGACCAGGACAAGAAGCCACGAGCCGTTGGC
ATGCAATATACACCTCAAATCGCAGTAGCTCTCTCCAAACCTCTAGCTTC
CTGCGGGCTAATAGTCCCCCTGCTCTCCTGGCCTGACGAGGGGTGGTAGT
TCGAACGCCCACCCGCCCTTTCCCTTGCTCCTCTCTCGTTTGTGATCACG
CCAGAGTGCAGAATTCAGAGGTTTCATGGAGATCGCCGCGGTGCTGGCGA
GGGGGCATTCCATCGTGAAAGAGGGGGAAAGCGCCACGCAGGGTGCTTCG
GCGGCTTTGCCCTCGGCCCCATGGCACACTGCAATATTTGCCCAGGTGAA
TACCGTAGGTGACACAAGATGAGATACGTACCGAAGATAAGACATCCTCT
AAACAAACTCTACCCAATACCACACCCCGTTATACTTTTTTGGGCACAAA
AAAATGGTCATTTGTCACACCGGTGACATGAGATACCACATCCCCTGACG
TTATGCCGACTTTGATTCACGGAGCCCCCTTAACACATCGTGTGGTACTG
CCGTGTTTTCACGTTTTCACACGCCAACGCACACACACGAGCATTCAATC
AACACCGCTGGTTGCAGACAAACGCACATCAGATGGGGGCAGAGAGCGTA
GTCATCCCTGCTGAAAATGACGCGGGTAAGAGGGCGTAAGCTACATCTGC
ACCAGCGCCTTCATGCTCGATCACGTCATTTTCTTCGAAACACCCCGCCG
CCTCCAAGCCAAGCGATGTTGGTACTCCAGCAGCATTCTTGCCTGTCGCC
GCATGAGCTGCCGACCTGTCGCCGCATGAGCTGCTGAAGGCCGCACAACA
GAGAGTCTGCTGAGACCCGCAGAACAGAGCCTGCTGTTTGACAGCGGCAA
TCTGTTGATGATAGCGATATCACACCCCCTTCAAGAACTTATTTGGTATG
CAGTACCAATCTATTAGCATTGGCACAGAGATATCACACCCCTTCTTTAT
CATACCCCCTCGTTTTATCATACTCCCTTCAAGGAGTTGTTTGGCAGCGG
CAATCGGCTGTCGCATATGGTACCACACCCCCTTGGTTTATCACACCCCC
TGGTTGCGGGCTCCACGACATGCACTGTCGGTATGGCACGGGCGACAGAA
GATAAGACACTCCTTACACAAAAGCACACCCTGTGACCAGTTTTTAAAGC
TCAATTTTGTTATCACAGGGGTGTCTTATCTTATGCCCCCCTGCTACGGC
AAGTAAGTTCGGCATGCTTTGCTGTAACATGCGCATGGACTCCCTCGTAT
GTAGTGGGGCGAGACTTTTTCCAGGCTCCCAGTCCGGCAGGCCCCGCCCT
GTGCACGTTCTGGGCCGCCGCATGTTATCTATGTAGCTTCCGCTGTAATG
CATTCCTGAGGGCGATCAAGTCAAGTGTGCCCCGCAACAGCCAAATGACC
CCCCGCCGCGGCCGTCCTGTGGGCGGCTCAAACTGTTTCAGGTCCGCCTG
GGTGCCGCGCGGCAGCGAAAGCTCGACGCCGTCGCCGCCGCGCGCGAAGA
AACGTACGCGAAGTACGCCAACATCTACAAGGACCACGCCGCCGAGAGGT
ACGTGCGGGCCATCGAGGCGTCCCGGCAGCAGAGGGGGGGGCTCGAGGCA
TACCGCCGACGGGTCGTCGCGGCGTCGACAGACGCGGAGCGCTACAGAGG
GTACGCCGAGACGAGCACGCCCAGAGACGGCGGGCGGGGGGAGGGGGCGG
AGGAGGGGACGGGGGGCGGCCCGAGGCTCCGGCTGCTGCGGGGAGACGAC
GACGGCGACGGCAGCATCCCATCGGGTTCTTCCGCATCTTTCAACGATCG
AGAGGGTTCCGGCGGCGGCGCCGGGCTATCGCAAGGAGAGAGCCGGGTCA
CGTCGGAGGGTTCCCTTTCCACCAGCCGCGAATCGACGGGAGACGATTCT
TCCACCGCACCAAGCGCTGCTGCCGCGGGAAAGGGAGGGGGAGGGGTTGC
AGACGAAGGGGCCACAGCGGTTTGGCTGGGAGAAGAAAGCGCGGCAGCTG
AGGGCCCGGCGGCAGCGCTGGCTTCGGGTGGGGGCGGCTTCGCGGAGGGC
GGACACGCCCCGACAGCAGCGAGGAGAGGGCGAGGAGGCGATGGTGGTGA
TGGTGGTGGTGGTCGTGGTTCCTTCGTGGACGTGGTTCCGTTCAACAATA
TCCGCGCCAAGTACTTGAGACCGTGGGACGACACGGAGTTGTCCGGGCCG
TACCACGTCGTGCCGTCGCCTGATTGGGGGGCGGGTGGCGCAGCCGGGAG
CCGGAGCCGAGGTTCAAGCATGGGTGGTCCATCCATCCCCACCTCTACCA
ACAGGGCTATGATTAATGCCGCGGGAAGCGGCCGGACGATGGAAGCCTAC
CACCGCACAGCCAAGCAGGGGGATCCGGTGACCCACCAACGCAGCAAGAC
ATTGAACTGGAAGGAGAGGAGAGAGTGGGGCGCGCGCTAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig632:20827..23666+ >mRNA_L-elsbetiae_contig632.14965.1 ID=mRNA_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig632:20827..23666+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGACAAAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGC
AAAGGCAGACGTGTTAGATCACGACCATTGGTCACCTCGCCAGGCTGACA
AAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGCAAAGGCA
GACGTGTTAGATCACGACCATTGGTCACCTCGCCAGAGTGCAGAATTCAG
AGGTTTCATGGAGATCGCCGCGGTGCTGGCGAGGGGGCATTCCATCGTGA
AAGAGGGGGAAAGCGCCACGCAGGGTGCTTCGGCGGCTTTGCCCTCGGCC
CCATGGCACACTGCAATATTTGCCCAGAGTGCAGAATTCAGAGGTTTCAT
GGAGATCGCCGCGGTGCTGGCGAGGGGGCATTCCATCGTGAAAGAGGGGG
AAAGCGCCACGCAGGGTGCTTCGGCGGCTTTGCCCTCGGCCCCATGGCAC
ACTGCAATATTTGCCCAGGTCCGCCTGGGTGCCGCGCGGCAGCGAAAGCT
CGACGCCGTCGCCGCCGCGCGCGAAGAAACGTACGCGAAGTACGCCAACA
TCTACAAGGACCACGCCGCCGAGAGGTACGTGCGGGCCATCGAGGCGTCC
CGGCAGCAGAGGGGGGGGCTCGAGGCATACCGCCGACGGGTCGTCGCGGC
GTCGACAGACGCGGAGCGCTACAGAGGGTACGCCGAGACGAGCACGCCCA
GAGACGGCGGGCGGGGGGAGGGGGCGGAGGAGGGGACGGGGGGCGGCCCG
AGGCTCCGGCTGCTGCGGGGAGACGACGACGGCGACGGCAGCATCCCATC
GGGTTCTTCCGCATCTTTCAACGATCGAGAGGGTTCCGGCGGCGGCGCCG
GGCTATCGCAAGGAGAGAGCCGGGTCACGTCGGAGGGTTCCCTTTCCACC
AGCCGCGAATCGACGGGAGACGATTCTTCCACCGCACCAAGCGCTGCTGC
CGCGGGAAAGGGAGGGGGAGGGGTTGCAGACGAAGGGGCCACAGCGGTTT
GGCTGGGAGAAGAAAGCGCGGCAGCTGAGGGCCCGGCGGCAGCGCTGGCT
TCGGGTGGGGGCGGCTTCGCGGAGGGCGGACACGCCCCGACAGCAGCGAG
GAGAGGGCGAGGAGGCGATGGTGGTGATGGTGGTGGTGGTCGTGGTTCCT
TCGTGGACGTGGTTCCGTTCAACAATATCCGCGCCAAGTACTTGAGACCG
TGGGACGACACGGAGTTGTCCGGGCCGTACCACGTCGTGCCGTCGCCTGA
TTGGGGGGCGGGTGGCGCAGCCGGGAGCCGGAGCCGAGGTTCAAGCATGG
GTGGTCCATCCATCCCCACCTCTACCAACAGGGCTATGATTAATGCCGCG
GGAAGCGGCCGGACGATGGAAGCCTACCACCGCACAGCCAAGCAGGGGGA
TCCGGTGACCCACCAACGCAGCAAGACATTGAACTGGAAGGAGAGGAGAG
AGTGGGGCGCGCGCTAAGTCCGCCTGGGTGCCGCGCGGCAGCGAAAGCTC
GACGCCGTCGCCGCCGCGCGCGAAGAAACGTACGCGAAGTACGCCAACAT
CTACAAGGACCACGCCGCCGAGAGGTACGTGCGGGCCATCGAGGCGTCCC
GGCAGCAGAGGGGGGGGCTCGAGGCATACCGCCGACGGGTCGTCGCGGCG
TCGACAGACGCGGAGCGCTACAGAGGGTACGCCGAGACGAGCACGCCCAG
AGACGGCGGGCGGGGGGAGGGGGCGGAGGAGGGGACGGGGGGCGGCCCGA
GGCTCCGGCTGCTGCGGGGAGACGACGACGGCGACGGCAGCATCCCATCG
GGTTCTTCCGCATCTTTCAACGATCGAGAGGGTTCCGGCGGCGGCGCCGG
GCTATCGCAAGGAGAGAGCCGGGTCACGTCGGAGGGTTCCCTTTCCACCA
GCCGCGAATCGACGGGAGACGATTCTTCCACCGCACCAAGCGCTGCTGCC
GCGGGAAAGGGAGGGGGAGGGGTTGCAGACGAAGGGGCCACAGCGGTTTG
GCTGGGAGAAGAAAGCGCGGCAGCTGAGGGCCCGGCGGCAGCGCTGGCTT
CGGGTGGGGGCGGCTTCGCGGAGGGCGGACACGCCCCGACAGCAGCGAGG
AGAGGGCGAGGAGGCGATGGTGGTGATGGTGGTGGTGGTCGTGGTTCCTT
CGTGGACGTGGTTCCGTTCAACAATATCCGCGCCAAGTACTTGAGACCGT
GGGACGACACGGAGTTGTCCGGGCCGTACCACGTCGTGCCGTCGCCTGAT
TGGGGGGCGGGTGGCGCAGCCGGGAGCCGGAGCCGAGGTTCAAGCATGGG
TGGTCCATCCATCCCCACCTCTACCAACAGGGCTATGATTAATGCCGCGG
GAAGCGGCCGGACGATGGAAGCCTACCACCGCACAGCCAAGCAGGGGGAT
CCGGTGACCCACCAACGCAGCAAGACATTGAACTGGAAGGAGAGGAGAGA
GTGGGGCGCGCGCTAA back to top
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