mRNA_L-elsbetiae_contig6261.14869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6261.14869.1
Unique NamemRNA_L-elsbetiae_contig6261.14869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6261.14869.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.040e-18
Identity = 57/128 (44.53%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:    4 APHIKTFLRYHQ---------------------------GSPW------APQLTLRSFELGVMFLPSLLGRPVRVAGEDGDQDDAETEDLAFMCTPGGMGLTQRRPLARRYECEPGKVLPLDLLPLPY 288
            APHIK++LRY +                            S W      +  LTLRSFE+GVMFLPSLL  P     +D D  +A  +   F CTPG MGLTQR PL+  Y+CE GK LPL LLPLPY
Sbjct:  440 APHIKSYLRYREVAGENGTETRVDGDEVAWFLLTSSNLSRSAWGYLNKASTDLTLRSFEMGVMFLPSLLRSP----SQDSDDGNAAAKASGFTCTPGEMGLTQRFPLSLGYDCEAGKGLPLSLLPLPY 563
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6261.14869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE95_ECTSI5.040e-1844.53Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6261contigL-elsbetiae_contig6261:8123..11087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D8LE95
Preferred nameTDBP1
KEGG koko:K10862
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons3
Model size863
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6261.14869.1prot_L-elsbetiae_contig6261.14869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6261 9678..10710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.9466376-UTR-L-elsbetiae_contig6261:8122..81611622816687.9466376-UTR-L-elsbetiae_contig6261:8122..8161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 8123..8161 +
1691683740.8707664-UTR-L-elsbetiae_contig6261:8122..81611691683740.8707664-UTR-L-elsbetiae_contig6261:8122..8161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 8123..8161 +
1622816687.9587862-UTR-L-elsbetiae_contig6261:9626..96771622816687.9587862-UTR-L-elsbetiae_contig6261:9626..9677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 9627..9677 +
1691683740.8871582-UTR-L-elsbetiae_contig6261:9626..96771691683740.8871582-UTR-L-elsbetiae_contig6261:9626..9677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 9627..9677 +
1622816687.9950867-UTR-L-elsbetiae_contig6261:10710..110871622816687.9950867-UTR-L-elsbetiae_contig6261:10710..11087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 10711..11087 +
1691683740.9242587-UTR-L-elsbetiae_contig6261:10710..110871691683740.9242587-UTR-L-elsbetiae_contig6261:10710..11087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 10711..11087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.9705746-CDS-L-elsbetiae_contig6261:9677..98861622816687.9705746-CDS-L-elsbetiae_contig6261:9677..9886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 9678..9886 +
1691683740.9015307-CDS-L-elsbetiae_contig6261:9677..98861691683740.9015307-CDS-L-elsbetiae_contig6261:9677..9886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 9678..9886 +
1622816687.9827354-CDS-L-elsbetiae_contig6261:10523..107101622816687.9827354-CDS-L-elsbetiae_contig6261:10523..10710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 10524..10710 +
1691683740.9129238-CDS-L-elsbetiae_contig6261:10523..107101691683740.9129238-CDS-L-elsbetiae_contig6261:10523..10710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 10524..10710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6261.14869.1

>prot_L-elsbetiae_contig6261.14869.1 ID=prot_L-elsbetiae_contig6261.14869.1|Name=mRNA_L-elsbetiae_contig6261.14869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MFLPSLLGRPVRVAGEDGDQDDAETEDLAFMCTPGGMGLTQRRPLARRYE
CEPGKVLPLDLLPLPYACAGSTLRLRQEPRRPRASVGVGSGVLVAGPHHE
VVARCRSLSKDRRHSARTHGCLIRAPQRMEL*
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mRNA from alignment at L-elsbetiae_contig6261:8123..11087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6261.14869.1 ID=mRNA_L-elsbetiae_contig6261.14869.1|Name=mRNA_L-elsbetiae_contig6261.14869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2965bp|location=Sequence derived from alignment at L-elsbetiae_contig6261:8123..11087+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCGCCGCACATCAAGACCTTCTTGCGCTACCACCAGGTGGCAATTTA
AACGTGGCGCTTGTTCTTCTGAACTCCCGATTGTTTGAAACCAGAAAATC
ACGGAACGGCGATTTGCGGCGCCCAAGATAAAGATTCAATGTTGGAACTT
CGAAATATTAAATATTTGGAACGTTTTCCGAATTCCAAATTCCAAATTTG
GCAAAAAATCGGAGCGTTTTAAACGCCCCTCAAGCAGCCTGGGTGGCGGA
GCCGTGGGGGGGGGGGGGGGGCGGGGGGGGGTGGGGGGGGTGGTGGAGCC
CAAGAAGGGGAGTGGGATTTTGAGGATGTTGCGGAGAAGAGGGTGGGCAG
ATAGCGANNNNNNNNNNAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAGG
GGAGGAGAGAACGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGTTGGGAGTGGTGCTGCATCCAAGTAAGC
GTCTAGGATTTCGTGGATTGTGCCGAACAGAGGGTCGCCATTATAGCGAG
CCGCCACTGCATGCGTGTGACAACTAGATAGTTGGCGTGAAAAGGAAAGA
GTGTAGAGTATCCGCGTTCAGGAGCAGCCGAGGTGTACGAGGCAAGCATC
GACGGCAAGAAGCGAGCCTCTCCCGCAACCGTTCGCCAATGTTTCTCAGC
GCGGTTGATTCTCCCTTTTGGTCGCGGGAGGGCGGCTTCGACGGTTGGCT
GGTTTGCGCCCCTTGGCGTGGCTTGGCATAGTGATTGTGACCTGCAAAGA
GTAGGTGATAGTGCGGCAGTTGCTTGACGCTTTTCCCGTGCAGCATGAGT
GCTAGGACTCCTCTTGCACCCCCCTCGATGTGGGGCGGCATGGCGATTTG
CGCTCCGAATCTCGCGCTCGGTCTTGCCGTTTGTGGTTGCAGGGAAGGAG
GAGACGCGGGTGGACGGGAACCAGGTGGTGTGGTGCCGGCTGACCAGTAG
CAACCTCAGCACGTCGGCATTGGGGTTACTCGAAAAAATGGTACGGGACC
ATGTATATATCTATGTAGAATTATGGCGGTTCTTCTGCAGCTTCTTGGTT
GGCCGTCCGCCGTGTGCATGCAGCCAGGGCGTTTATTTGTTTACTTTTTT
CACAATATGATGATGCTGGTTTTTCTTTCCGTTGCGGCAACAGAGCAGAT
CAGATCAGATCAGATCGCGCGTGGCTCGAGGTTCAGCCTGCAAGGGCGGC
GTTGGAAGCCCAAAGGTTTCATTTCTTCTCACCATGTCCGCGGGCGGCAA
CGGGGTAGACTTGGCGCTGCACCGTTGCTGATAAGTAGGTAGCGTCGTTG
TCCACATACCCCAGCTTTGCAGTAGAAGAGCGTGGGGTGTCTCATCTGCT
TAACTACCCCCATGGCGCGGCTTCCGTAGAGGTTTATGCATGCATACACG
CGTCGACGCAAACCAATGCATGCATAATTTACCCCTGAACCCGCGCGTCG
GCAGGGCTCGCCGTGGGCGCCGCAGCTGACTCTGAGGTCTTTCGAGCTCG
GAGTGATGTTTCTCCCGAGCCTGCTGGGCCGGCCCGTACGCGTTGCGGGC
GAGGACGGCGACCAGGATGATGCGGAGACAGAGGACTTGGCCTTCATGTG
CACGCCCGGGGGGATGGGGCTCACGCAGCGCCGCCCACTGGCCCGGCGCT
ACGAGTGCGAGCCGGGGAAGGTGCTGCCTCTCGACCTCCTCCCGCTGCCG
TATGCATGTGCCGGGTGAGCAGTTGAAGGAAGGCCGGAGAGCCGGTGTGT
GTGTGTGTGTGTGTGTATGTCTGTGTGCGCTGGACCCACGTGGTGTTTTT
TTTTTATCGTCCGGTTGAAGGTGTCAAAGCTGTCTGTCGATGCTGCTCTG
CACGATCACAGTGACGTGCAGGCCACGAATAGTTGCGTTGGACAGAAAAT
ACGCAACACCAGCAGGACATTGCTTTCTCGTCACCAAAGGTTGTGAATGA
TTCATGCGGTGGCATCTACGTGTGTGTTTGATGTCTCCATGCACACCTAA
CAACGACTTTGGCGGTTTCGACAATTTTCAGCGGCTTTCACGCCTACTAG
AATTTACCGCACCGGTAACCTTGATCGGGGTTTGCCAGCAGTCCAAAAAC
CCTCCACCGTCTTGGGGCGGGGAGGGAGAGACAACAGCATGGCGTCCCTA
CCGTAAATTTCATCACTAACCTCGATGCTTCATCTCATAAACAATCAGAC
CTTAGACCTTTCAGCGCCGCCAAGTTGTTCACGTAGTCTAGTTTTTACCC
TTCGACCCTGCCTGCCATTGCTCTGGTCTTGTTTTTGCCGCGGCGCCTGC
TCTTCGCGCCTTGTTCCCGCTCTGGATTTGGTTTTGGCGTGACGCGACCA
GCTCCACGCTACGACTTCGACAGGAGCCAAGACGACCGCGAGCGTCCGTG
GGTGTGGGATCAGGCGTTCTCGTCGCTGGACCACACCATGAGGTCGTGGC
CCGGTGTCGGTCGTTGAGCAAAGACCGAAGACACAGTGCACGCACGCACG
GGTGCCTGATACGTGCTCCACAACGAATGGAACTGTAGACTGGGTTAGGT
TTGATTCGAATTGATTTTATTTTATTTGCAACAACACATTTGTTTTTTCT
CTGTTTCGTTGTCCTGTGTACGCTACATAGTTCACCAGGTTTTTCGAGTT
GAGTCGGTCCTTTTTGTTGTCGAGGGAAAAGAGACTCCGGCGGGTTGTTA
CAAGAGCCACGCACCCTCGACAGCCGCGGTCGAGCATGCACGATGGCAAA
GCTCGTCGCCGTGAAGTCCACGCACGGTGGGCGCGCGGGGTGGTCAAAGC
TAGGCTCTCTCCGTTGCCTGCCCGCTTGTTCCTTTGTCGGGGAGTGAGTG
CCAACCCGGCACCGTAGAATTGATGACGACGACGACGAACGTTTTTCCGA
GGTATTGTATCAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6261:8123..11087+

>mRNA_L-elsbetiae_contig6261.14869.1 ID=mRNA_L-elsbetiae_contig6261.14869.1|Name=mRNA_L-elsbetiae_contig6261.14869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig6261:8123..11087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTCCCGAGCCTGCTGGGCCGGCCCGTACGCGTTGCGGGCGAGGA
CGGCGACCAGGATGATGCGGAGACAGAGGACTTGGCCTTCATGTGCACGC
CCGGGGGGATGGGGCTCACGCAGCGCCGCCCACTGGCCCGGCGCTACGAG
TGCGAGCCGGGGAAGGTGCTGCCTCTCGACCTCCTCCCGCTGCCGTATGC
ATGTGCCGGATGTTTCTCCCGAGCCTGCTGGGCCGGCCCGTACGCGTTGC
GGGCGAGGACGGCGACCAGGATGATGCGGAGACAGAGGACTTGGCCTTCA
TGTGCACGCCCGGGGGGATGGGGCTCACGCAGCGCCGCCCACTGGCCCGG
CGCTACGAGTGCGAGCCGGGGAAGGTGCTGCCTCTCGACCTCCTCCCGCT
GCCGTATGCATGTGCCGGCTCCACGCTACGACTTCGACAGGAGCCAAGAC
GACCGCGAGCGTCCGTGGGTGTGGGATCAGGCGTTCTCGTCGCTGGACCA
CACCATGAGGTCGTGGCCCGGTGTCGGTCGTTGAGCAAAGACCGAAGACA
CAGTGCACGCACGCACGGGTGCCTGATACGTGCTCCACAACGAATGGAAC
TGTAGCTCCACGCTACGACTTCGACAGGAGCCAAGACGACCGCGAGCGTC
CGTGGGTGTGGGATCAGGCGTTCTCGTCGCTGGACCACACCATGAGGTCG
TGGCCCGGTGTCGGTCGTTGAGCAAAGACCGAAGACACAGTGCACGCACG
CACGGGTGCCTGATACGTGCTCCACAACGAATGGAACTGTAG
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