mRNA_L-elsbetiae_contig6257.14857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6257.14857.1
Unique NamemRNA_L-elsbetiae_contig6257.14857.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6257.14857.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.620e-26
Identity = 95/142 (66.90%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:  157 EVAALEAYMKTHPSKEKEKEALRKRARELSASIGSDQGPDAAKGSREAGGSAAGPEGGVNKPPXXP----DEPIEYTDASGKLKFNKRPTAGASGPGXXXXXXXXXXXXXXXXXXSKKKTKRAKLAKLNNAKLLSFGDDEDG 570
            EVAALEAYMKTHPSKE++KEALRKRARELSASIGS QG +A KG R AGG+            XX     +EPIEYTDASGKLKFNKRP + A+G  XXXXXXXXXXXXXXXXXX             +NAKLLSFGDDEDG
Sbjct:   46 EVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEA-KGGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKRPVSAAAGGXXXXXXXXXXXXXXXXXXXX--------XXXXSNAKLLSFGDDEDG 178
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BLAST of mRNA_L-elsbetiae_contig6257.14857.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-8
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:  157 EVAALEAYMKTHPSKEKEKEALRKRARELSASIGSDQ 267
            EVAALEAYMKTHPSKE++KEALRKRARELS SIGS Q
Sbjct:  110 EVAALEAYMKTHPSKEEDKEALRKRARELSVSIGSGQ 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6257.14857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH3_ECTSI7.620e-2666.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF2_9PHAE4.040e-889.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6257contigL-elsbetiae_contig6257:4005..5515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size573
Cds size573
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.9451027-CDS-L-elsbetiae_contig6257:4004..43101622816686.9451027-CDS-L-elsbetiae_contig6257:4004..4310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 4005..4310 -
1691683740.1526208-CDS-L-elsbetiae_contig6257:4004..43101691683740.1526208-CDS-L-elsbetiae_contig6257:4004..4310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 4005..4310 -
1622816686.9603386-CDS-L-elsbetiae_contig6257:5248..55151622816686.9603386-CDS-L-elsbetiae_contig6257:5248..5515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 5249..5515 -
1691683740.164815-CDS-L-elsbetiae_contig6257:5248..55151691683740.164815-CDS-L-elsbetiae_contig6257:5248..5515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 5249..5515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6257.14857.1prot_L-elsbetiae_contig6257.14857.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6257 4005..5515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6257.14857.1

>prot_L-elsbetiae_contig6257.14857.1 ID=prot_L-elsbetiae_contig6257.14857.1|Name=mRNA_L-elsbetiae_contig6257.14857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MPGKGRGRDRDSSTQGGGRGPGGGGGAAAAAAAGGGGGGGGSGDGFGDYD
EEEVAALEAYMKTHPSKEKEKEALRKRARELSASIGSDQGPDAAKGSREA
GGSAAGPEGGVNKPPPPPDEPIEYTDASGKLKFNKRPTAGASGPGAGAGA
AAAGRGGAEGGRGSKKKTKRAKLAKLNNAKLLSFGDDEDG*
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mRNA from alignment at L-elsbetiae_contig6257:4005..5515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6257.14857.1 ID=mRNA_L-elsbetiae_contig6257.14857.1|Name=mRNA_L-elsbetiae_contig6257.14857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1511bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:4005..5515- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGCAAGGGGCGAGGCCGAGATAGAGACTCCAGCACGCAAGGCGG
GGGCCGGGGGCCGGGGGGGGGGGGGGGGGCGGCGGCAGCAGCAGCAGCGG
GGGGCGGCGGCGGCGGCGGCGGGAGCGGTGACGGGTTTGGAGATTACGAC
GAGGAAGAGGTGGCCGCCTTGGAGGCGTACATGAAGACCCACCCCAGCAA
GGAAAAAGAAAAAGAGGCGTTGCGGAAACGCGCGAGAGAGCTCTCGGCCA
GCATTGGTTCCGACCAGGTGGGCCCCTTTTGAGATCTCTTAACCCGCGTG
CTTCCCATGTGCGTGTGTGTATGTGCGGCGCGTTCGTATGTATGCATCCA
TAGGCGCCTTTACAGGCAAACACGCAGCAGACGCCCAAACAGCGCAGGTA
GGTGGCAGCTGAGGCCCTTCGAAGGGGATTTGCTCAGAAGCGCAGTCATG
TTTTTTATTCAAGTCCAGCTAGGGAATTAGATTATTTTGATGACGGATTT
TTTTGCCCCATCGATCGGGAGACACACGCATCTAGATGTTTGCGATGCTG
GTAAAAAAAATCTTGTCTTTTGTGGTGCGGGTGCTTGATTTATGGTAACA
CGCGCGCGCGCTTGTTGGAGGGCCTCTGGTAAACTTGACTTGCGTAAAAA
AAAAAGGAACCCCGTGACAAATCAAGTTTACCAGAGGGTCTGCGTGACAT
ACAGACGGATCATATTGTCAACCCAACTGTAAACCCCGCATGGACCCACC
CCCCCAAACCAGTTATGTGTACCACCAAAGTACGTGTGTGTATATATGTA
TATACTTGGAAGTACCACAAGTAAAAGGCAGGCACACCCATCCCACGAGT
TCCTGCTTCCACCCGCCGTCACTCGCAATGTAAGAGGGTTGATGCCCCCC
GTAGAGGCGCTTGTCCGTGCTACATATGGTACATATATACAAGTTACGAT
GCCAGGTCGTCTGGCTTTCTCACTCTGTACATACATACATACATACCACC
AAGAATGTAAGCTCTTCTCTGTTGTCCGCCGACGCATGCCGGTGCTTTTC
CATCTGAAAGCAGCCGCAGCGGGGAAAACCCGAACGAGAGCAACCCTGCC
GCGCCAGATCCCTAGACAACGTTTGCCGTCCTTTGTACTTTTATGCTGAG
TCGCCCGAAACGTCGCCGTGCGCTGCTGCGCCCTCTGCCGAATTCATGGA
ACCAGGGGCCAGACGCCGCGAAGGGGAGCAGGGAGGCCGGGGGCTCCGCG
GCTGGGCCGGAAGGGGGCGTGAACAAGCCCCCCCCCCCACCCGACGAGCC
CATCGAGTACACAGATGCTTCGGGAAAGTTAAAATTCAACAAGCGGCCAA
CTGCGGGGGCTTCGGGGCCGGGGGCGGGGGCGGGGGCGGCGGCGGCTGGT
AGAGGTGGGGCAGAGGGAGGCAGGGGCTCTAAAAAGAAGACCAAGCGAGC
CAAGCTGGCAAAGCTAAACAATGCAAAGCTGCTGTCCTTCGGAGATGACG
AGGATGGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6257:4005..5515-

>mRNA_L-elsbetiae_contig6257.14857.1 ID=mRNA_L-elsbetiae_contig6257.14857.1|Name=mRNA_L-elsbetiae_contig6257.14857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:4005..5515- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGCAAGGGGCGAGGCCGAGATAGAGACTCCAGCACGCAAGGCGG
GGGCCGGGGGCCGGGGGGGGGGGGGGGGGCGGCGGCAGCAGCAGCAGCGG
GGGGCGGCGGCGGCGGCGGCGGGAGCGGTGACGGGTTTGGAGATTACGAC
GAGGAAGAGGTGGCCGCCTTGGAGGCGTACATGAAGACCCACCCCAGCAA
GGAAAAAGAAAAAGAGGCGTTGCGGAAACGCGCGAGAGAGCTCTCGGCCA
GCATTGGTTCCGACCAGATGCCTGGCAAGGGGCGAGGCCGAGATAGAGAC
TCCAGCACGCAAGGCGGGGGCCGGGGGCCGGGGGGGGGGGGGGGGGCGGC
GGCAGCAGCAGCAGCGGGGGGCGGCGGCGGCGGCGGCGGGAGCGGTGACG
GGTTTGGAGATTACGACGAGGAAGAGGTGGCCGCCTTGGAGGCGTACATG
AAGACCCACCCCAGCAAGGAAAAAGAAAAAGAGGCGTTGCGGAAACGCGC
GAGAGAGCTCTCGGCCAGCATTGGTTCCGACCAGGGGCCAGACGCCGCGA
AGGGGAGCAGGGAGGCCGGGGGCTCCGCGGCTGGGCCGGAAGGGGGCGTG
AACAAGCCCCCCCCCCCACCCGACGAGCCCATCGAGTACACAGATGCTTC
GGGAAAGTTAAAATTCAACAAGCGGCCAACTGCGGGGGCTTCGGGGCCGG
GGGCGGGGGCGGGGGCGGCGGCGGCTGGTAGAGGTGGGGCAGAGGGAGGC
AGGGGCTCTAAAAAGAAGACCAAGCGAGCCAAGCTGGCAAAGCTAAACAA
TGCAAAGCTGCTGTCCTTCGGAGATGACGAGGATGGATAAGGGCCAGACG
CCGCGAAGGGGAGCAGGGAGGCCGGGGGCTCCGCGGCTGGGCCGGAAGGG
GGCGTGAACAAGCCCCCCCCCCCACCCGACGAGCCCATCGAGTACACAGA
TGCTTCGGGAAAGTTAAAATTCAACAAGCGGCCAACTGCGGGGGCTTCGG
GGCCGGGGGCGGGGGCGGGGGCGGCGGCGGCTGGTAGAGGTGGGGCAGAG
GGAGGCAGGGGCTCTAAAAAGAAGACCAAGCGAGCCAAGCTGGCAAAGCT
AAACAATGCAAAGCTGCTGTCCTTCGGAGATGACGAGGATGGATAA
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