mRNA_L-elsbetiae_contig624.14836.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig624.14836.1
Unique NamemRNA_L-elsbetiae_contig624.14836.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig624.14836.1 vs. uniprot
Match: D8LIG8_ECTSI (DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 7.190e-20
Identity = 64/115 (55.65%), Postives = 66/115 (57.39%), Query Frame = 2 
Query:    2 GMRVTWMVAFWRDIQARPRPAPPXXXXPTAVEKKRRGQKAPAERKAGET--SAG---RQLPPSGAGAAQPFPAMPPT---------ECGGATT--PSWPALFRKKPDGWGGDADG 298
            GMRVTWMVAFWRDIQARP P+      PTA          PAE K   T   AG   RQ PPSGAGAAQPFPAMPP           C  A    PSWPALFRKKP+GW  D  G
Sbjct:  620 GMRVTWMVAFWRDIQARPPPSQ-QSPAPTAT--------TPAEEKTASTRGEAGIRRRQPPPSGAGAAQPFPAMPPLASGNPNGGRRCSSAAVAGPSWPALFRKKPEGWDEDTAG 725
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig624.14836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIG8_ECTSI7.190e-2055.65DNA glycosylase n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig624contigL-elsbetiae_contig624:5718..6020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.080739-CDS-L-elsbetiae_contig624:5717..60201622816685.080739-CDS-L-elsbetiae_contig624:5717..6020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig624 5718..6020 +
1691683738.8006992-CDS-L-elsbetiae_contig624:5717..60201691683738.8006992-CDS-L-elsbetiae_contig624:5717..6020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig624 5718..6020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig624.14836.1prot_L-elsbetiae_contig624.14836.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig624 5718..6020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig624.14836.1

>prot_L-elsbetiae_contig624.14836.1 ID=prot_L-elsbetiae_contig624.14836.1|Name=mRNA_L-elsbetiae_contig624.14836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
GHARDVDGGLLEGHPGPSPPRAPFAASTHRGGEKAKGAKSTSRTESRRNQ
RWAAASAFGCRGGATFSGNASNRVRRRHHAFVAGAVPEEARRLGGRRRWR
G
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mRNA from alignment at L-elsbetiae_contig624:5718..6020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig624.14836.1 ID=mRNA_L-elsbetiae_contig624.14836.1|Name=mRNA_L-elsbetiae_contig624.14836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig624:5718..6020+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCATGCGCGTGACGTGGATGGTGGCCTTCTGGAGGGACATCCAGGCCC
GTCCCCGCCCCGCGCCCCCTTCGCCGCCAGCACCCACCGCGGTGGAGAAA
AAGCGAAGGGGGCAAAAAGCACCAGCAGAACGGAAAGCAGGAGAAACCAG
CGCTGGGCGGCAGCTTCCGCCTTCGGGTGCCGGGGCGGCGCAACCTTTTC
CGGCAATGCCTCCAACCGAGTGCGGCGGCGCCACCACGCCTTCGTGGCCG
GCGCTGTTCCGGAAGAAGCCCGACGGCTGGGGGGGCGACGCAGATGGCGG
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig624:5718..6020+

>mRNA_L-elsbetiae_contig624.14836.1 ID=mRNA_L-elsbetiae_contig624.14836.1|Name=mRNA_L-elsbetiae_contig624.14836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig624:5718..6020+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCATGCGCGTGACGTGGATGGTGGCCTTCTGGAGGGACATCCAGGCCC
GTCCCCGCCCCGCGCCCCCTTCGCCGCCAGCACCCACCGCGGTGGAGAAA
AAGCGAAGGGGGCAAAAAGCACCAGCAGAACGGAAAGCAGGAGAAACCAG
CGCTGGGCGGCAGCTTCCGCCTTCGGGTGCCGGGGCGGCGCAACCTTTTC
CGGCAATGCCTCCAACCGAGTGCGGCGGCGCCACCACGCCTTCGTGGCCG
GCGCTGTTCCGGAAGAAGCCCGACGGCTGGGGGGGCGACGCAGATGGCGG
GGGGGGCATGCGCGTGACGTGGATGGTGGCCTTCTGGAGGGACATCCAGG
CCCGTCCCCGCCCCGCGCCCCCTTCGCCGCCAGCACCCACCGCGGTGGAG
AAAAAGCGAAGGGGGCAAAAAGCACCAGCAGAACGGAAAGCAGGAGAAAC
CAGCGCTGGGCGGCAGCTTCCGCCTTCGGGTGCCGGGGCGGCGCAACCTT
TTCCGGCAATGCCTCCAACCGAGTGCGGCGGCGCCACCACGCCTTCGTGG
CCGGCGCTGTTCCGGAAGAAGCCCGACGGCTGGGGGGGCGACGCAGATGG
CGGGGG
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