mRNA_L-elsbetiae_contig6201.14790.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6201.14790.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI) HSP 1 Score: 365 bits (936), Expect = 9.540e-101 Identity = 619/1265 (48.93%), Postives = 692/1265 (54.70%), Query Frame = 1
Query: 4 EGGDILVVRASRIQEDFQREALYVEVTHEG-AAGQTRTTA-CTASPSWEGTLTLPLGNRRQGSVRVSVSPDVPPTVEELAELAFEGKQPPLSLGYVRVPVADLAGLERSRPFTLEGAPGE----NPPSITLGFTVVEDRGSAGLGNGAEGGEGGTGVSVSGIFSTSDFSVDPPLPARSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXARGMGSRGARSSSFSSRGEDSGSRPRSGTSGEEGRGGK--------------------------------------------------LGAVPVSCLGAAAGRLAGAPPGLGGGWRRGSXXXXXXXXXXXXXXXXXXAHGSGTDGSSDMSSEGIAALLQSIAREEKSRAGEGAGASPGVSPNDGGGVXXXXXXXXXXXXXXXXXXXXSSDFEFSSAQPVSTLGDLWGSSGGAGMSYNRDGSTVSGQALGTPRREAAAAAAAERLEVLTATVAATVAEVAAETYDRDSAVHGFLNTTTSSFVPGDVLDTSSADDXXXXXXXXXXXXXSGSSRTPLGGLPMSGSRSPRAAAXXXXXXXXSVARPGRRELDSESDRSLFPDHHHXXXXXXXXXXXXXXXXXFAGGMPLAGSRSPPD---ARRVPGRREPDSSDSS------NFQPPAAAATGRDKPGRRRXXXXXXXXXXXXXXXXXXXXQNFLPEASIAAAILEPAVMTSAPLDSLSPRGSGFHPVDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEPGSGLRATHFAPGYVGVAWPDPLEAGAAARHLVAARERLLAKLEDASARKIADVEGKSLRARRDRAERVKRRNILLEKQVRREIRDSIEEQERRLQRQLEAAQRRQAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRRRRAMLEADETRAKVYAFKRRGELRTQALLRGVVRG-AKSEEDIAAAAEAFEVAAARGGGAGXXXXXXXKGAAARGPVIASGAPRSTWESWSEQRRSKAEEIRLQGEMEKAFKALGSVAALRRDNAVGARRDRARESNARAEEGHGRARKRLRMQAETAAARPEVRVPSTAAQAAHTQRESARAGEDRAVARRLEHLDTVAARLQEAGAEIEANMDLLGL 3600
EG ++VR S +Q Q Y+EVTHEG ++GQTR T+ C AS SW TLTLPL + +QG ++VSV P P E LAELAF GK PP LG+V VPVADLAGLERSRPFTLE G P SI LGFTVVED + G G+G + SGIFSTSDFSVDPPLP SS SS + R E R RS +GE GG L +GA + A PG G W R + G + +D A L+Q +A +E++ + +G NDG + XXXXXXXXXXXXXXXXXXX + PV++ S+GG + G A+ TPRREAAA RL+ ATVAATVAEVAAETYD S GF N S SS +GGLPMSGSRSPR AA + R GRRE D++++ H FAGG+PLAGSRSPP R PGRR+ + P +A +PG R Q PE + T+A + GS P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PG LRATHFAPG+VGVAWPDP E AA R L AARER+L K+E+ASARKIA+VE ++ KRRN +LEK+VR EI+D++EEQERRL+RQLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVRRRRAMLEADE RAK+YAFKRRGELRTQALLRG RG A SEEDIAAAAEAFE AA G G G A+G VIA G PR +ESW+E RRSKAEEIRLQG MEKAFKAL VAA RR+NAV ARRDRARESNARAEE DRAVARRLEHLD VAARL+EAGAEIEAN+DLLGL
Sbjct: 6 EGAAAVIVRVSNLQGALQESLCYIEVTHEGTSSGQTRVTSTCDASQSWSRTLTLPLNSLQQGHLKVSVCPGAPLDEERLAELAFGGKLPPAPLGFVSVPVADLAGLERSRPFTLEAEGGSPIARGPRSIDLGFTVVEDSAANGSGDGGK-----EPAHSSGIFSTSDFSVDPPLPVHSS-----------------------------------------SSSTRRSEP---RARSKGAGELIGGGAGPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRVSGGGRVGAERQGMRHAAPGFGS-WERATDDENDHRPPSQATDDSLEG---GDESEADDFGVAAAVLVQDLAAKERAMGEDESG-------NDGSSLRXXXXXXXXXXXXXXXXXXXXXXXXY----PVNS------SAGG----------DLGGGAMDTPRREAAAV----RLQ---ATVAATVAEVAAETYDGGSLRSGFFN----SLDXXXXXXQSSH----------------------IGGLPMSGSRSPREAAV--------IPRSGRREPDTDTES------HRHGNPPTPPAGSTSSEGFFAGGLPLAGSRSPPPLAAGRGAPGRRDXXXXXXXXXXXXXSLLPLSAGNRSSPRPGGGRLRRR----------------QRRQPEEQGPVPAPAGVIGTTAGTNG---DGSSSGPLEALSSSPRAPRPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGRGREPLRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPVVPG--LRATHFAPGFVGVAWPDPFEEPAAVRQLNAARERVLTKIEEASARKIAEVEERAXXXXXXXXXXQKRRNTMLEKKVRGEIKDAMEEQERRLRRQLEXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERAEAVRRRRAMLEADEARAKIYAFKRRGELRTQALLRGCARGGAASEEDIAAAAEAFEAAAGVGAGXGVKV--------AKGAVIAGGTPRPRFESWNELRRSKAEEIRLQGTMEKAFKALHGVAARRRENAVYARRDRARESNARAEEXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAVARRLEHLDRVAARLEEAGAEIEANIDLLGL 1101
BLAST of mRNA_L-elsbetiae_contig6201.14790.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE) HSP 1 Score: 333 bits (854), Expect = 3.170e-90 Identity = 571/1321 (43.22%), Postives = 639/1321 (48.37%), Query Frame = 1
Query: 175 RQGSVRVSVSPDVPPTVEELAELAFEGKQPPLSLGYVRVPVADLAGLERSRPFTLEGAPGE----NPPSITLGFTVVEDRGSAGLGNGAEGGEGGTGVSVSGIFSTSDFSVDPPLPARSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXA--RGMGSRGARSSSFSSRGEDSGS-------------------------------------------------------------------------RPRSG--------TSG----EEGRGGKLGAVPVSCLGAAAGRLAGAPPGLGGGWRRGSXXXXXXXXXXXXXXXXXXAHGSGTDGSSDMSSEGIAALLQSIAREEKSRAGEGAGASPGVSPNDGGGVXXXXXXXXXXXXXXXXXXXXSSDFEFSSAQPV--STLGDLWGSSGGAGMSYNRDGSTVSGQALGTPRREAAAAAAAERLEVLTATVAATVAEVAAETYDRDSAVHGFLNTTTSSFVPGDVLDTSSADDXXXXXXXXXXXXXSGSSRTPLGGLPMSGSRSPRAAAXXXXXXXXSVARPGRRELDSESDRSLFPDHHHXXXXXXXXXXXXXXXXXFAGGMPLAGSRSPPDA---RRVPGRREPDSSDSSNFQPPAAAATGRDKPGRRRXXXXXXXXXXXXXXXXXXXXQNFLPEASIAA--AILEPAVMTSAPLDSLSPRGSGFHPVDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEPGSGLRATHFAPGYVGVAWPDPLEAGAAARHLVAARERLLAKLEDASARKIADVEGKSLRARRDRAERVKRRNILLEKQVRREIRDSIEEQERRLQRQLEAAQRRQAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRRRRAMLEADETRAKVYAFKRRGELRTQALLRGVVRG-AKSEEDIAAAAEAFEVAAARGGGAGXXXXXXXKGAAARGPVIASGAPRSTWESWSEQRRSKAEEIRLQGEMEKAFKALGSVAALRRDNAVGARRDRARESNARAE----------------------------------------------------EGHGRARKRLRMQAETAA-----------ARPEVRVPSTAAQAA-----------------HTQRESARAGEDRAVARRLEHLDTVAARLQEAGAEIEANMDLLGL 3600
RQG ++VSV P P E LAELAFEGK PP LG+V VPVADLAGLERSRPFTLE G P SI LGFTVVED + LG+G + SGIFSTSDFSVDPPLP SS + +R R+S + DSG R R+G TSG EEG G G V +GA + A PG G W+R + G + +D A LLQ +A +E+ DG G+ XXXXXXXXXXXXXX SA PV ST GDL G+SGGA R A+ TPRREAA+ L ATVAATVAEVAAET+D S GF N+ SS +GGLPMSGSRSPR AA + PGRRE D+ES+ H FAGG+PLAGSRSPP A R PGRR+P SSD+ + P++ + R XXXXXXXXXXXXXXXXXXXX A++ A +S PL++LS P G G XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLRATHFAPG+VGVAWPDP E +A R L AARER+L K+E+ASARKIA+VE ++ KRRN +LEK+VR EI+D++EEQERRL+RQLE XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX AVRRRRA+LEADE RAK+YAFKRRGELRTQALLRG RG A SEEDIAAAAEAFE GAG AA+G VIA G R +ESW+E RRSKAEEIRLQG MEKAFKAL VAA RR+NAVGARRDRARESNARAE E G AR+ + E ++ R EVRVPS A DRAVARRLEHLD VAARL+EAGAEIEAN+DLLGL
Sbjct: 3 RQGHLKVSVCPGAPLDEERLAELAFEGKLPPAPLGFVGVPVADLAGLERSRPFTLEAEGGSPVARGPRSIDLGFTVVEDIAANRLGDGGK-----EPAHSSGIFSTSDFSVDPPLPVHSSSSSTRRSEPRARWEGAGESNGGAGEVFGSGGAVQQQATRSPRASYYGGVERDSGGSVASRSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSCGTRRGRAGKRGVGSSSTSGSAFSEEGLGNPGGESGVGRVGAERQGMRDAAPGFGS-WKRVTDDQNDHRPPSQATDDSLEG---GDESEADDFGVAAAVLLQDLAAKER------------AMDEDGSGIDGSSLRXXXXXXXXXXXXXXXXXXXXXSAHPVNSSTGGDLLGTSGGAAGRSRRX---XXXXAMDTPRREAASVK-------LQATVAATVAEVAAETFDGGSLQSGFFNSLDXXXXXXXXXXXSSH----------------------IGGLPMSGSRSPREAAV--------IPMPGRREPDTESES------HRHRNPPTPPAGSTSSEVFFAGGLPLAGSRSPPPAAAGRGAPGRRDPSSSDADSSGGPSSLLS-LSAGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGTTAGTNCGGSSSGPLEALSSPPRAPRPATGGGIGGMRQRDGATEDMLWRNRSSEVSCWEHEKSTGDEEGSXXXXXXXXXXAGVGRGREPLRNKQQLRQVPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVVP-----------------GLRATHFAPGFVGVAWPDPFEEPSAVRQLNAARERVLTKIEEASARKIAEVEERAXXXXXXXXXXQKRRNTMLEKKVRGEIKDALEEQERRLRRQLEXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXTXXXTIGAAARERAEAVRRRRALLEADEARAKIYAFKRRGELRTQALLRGCARGGAASEEDIAAAAEAFEXXXXXXTGAGAGVK------AAKGVVIAGGTTRPRFESWNELRRSKAEEIRLQGTMEKAFKALHGVAARRRENAVGARRDRARESNARAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPGYPPLVEILGEAREVVDNNDEDSSDAASSEGAERGVRVEVRVPSVNGTEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAVARRLEHLDRVAARLEEAGAEIEANIDLLGL 1220 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6201.14790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6201.14790.1 >prot_L-elsbetiae_contig6201.14790.1 ID=prot_L-elsbetiae_contig6201.14790.1|Name=mRNA_L-elsbetiae_contig6201.14790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1289bp MEGGDILVVRASRIQEDFQREALYVEVTHEGAAGQTRTTACTASPSWEGTback to top mRNA from alignment at L-elsbetiae_contig6201:2808..10514+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6201.14790.1 ID=mRNA_L-elsbetiae_contig6201.14790.1|Name=mRNA_L-elsbetiae_contig6201.14790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7707bp|location=Sequence derived from alignment at L-elsbetiae_contig6201:2808..10514+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6201:2808..10514+ >mRNA_L-elsbetiae_contig6201.14790.1 ID=mRNA_L-elsbetiae_contig6201.14790.1|Name=mRNA_L-elsbetiae_contig6201.14790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7734bp|location=Sequence derived from alignment at L-elsbetiae_contig6201:2808..10514+ (Laminarionema elsbetiae ELsaHSoW15)back to top |