mRNA_L-elsbetiae_contig6197.14777.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6197.14777.1
Unique NamemRNA_L-elsbetiae_contig6197.14777.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6197.14777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6197contigL-elsbetiae_contig6197:8434..9540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size466
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6197.14777.1prot_L-elsbetiae_contig6197.14777.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6197 8434..9520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.27481-CDS-L-elsbetiae_contig6197:8433..88451622816679.27481-CDS-L-elsbetiae_contig6197:8433..8845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6197 8434..8845 -
1691683734.1856272-CDS-L-elsbetiae_contig6197:8433..88451691683734.1856272-CDS-L-elsbetiae_contig6197:8433..8845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6197 8434..8845 -
1622816679.2847872-CDS-L-elsbetiae_contig6197:9488..95201622816679.2847872-CDS-L-elsbetiae_contig6197:9488..9520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6197 9489..9520 -
1691683734.1966224-CDS-L-elsbetiae_contig6197:9488..95201691683734.1966224-CDS-L-elsbetiae_contig6197:9488..9520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6197 9489..9520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.2960436-UTR-L-elsbetiae_contig6197:9520..95401622816679.2960436-UTR-L-elsbetiae_contig6197:9520..9540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6197 9521..9540 -
1691683734.2065632-UTR-L-elsbetiae_contig6197:9520..95401691683734.2065632-UTR-L-elsbetiae_contig6197:9520..9540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6197 9521..9540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6197.14777.1

>prot_L-elsbetiae_contig6197.14777.1 ID=prot_L-elsbetiae_contig6197.14777.1|Name=mRNA_L-elsbetiae_contig6197.14777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MDCICGNTFCKSVYNLMAVAARERGHFYLCDDTSATFESKTKLGHPMIDL
QDVETISLTSEASDESWARGGFNKRRKPTGMEGGNRKASSPAGAAAAAVA
AGFVGAFGGSVGNGQHLRRTGMEFSSGQGAGSAAFSTASSSSISSSDS
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mRNA from alignment at L-elsbetiae_contig6197:8434..9540-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6197.14777.1 ID=mRNA_L-elsbetiae_contig6197.14777.1|Name=mRNA_L-elsbetiae_contig6197.14777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1107bp|location=Sequence derived from alignment at L-elsbetiae_contig6197:8434..9540- (Laminarionema elsbetiae ELsaHSoW15)
CGTTTGAGGAGTTTCGCGGCATGGACTGCATCTGTGGCAACACCTTTTGC
AAGTGAGTGCTGTGTTGTATCCTGTGCTCCGTGGGGTTTTTGTTGCCTTT
GCGTGGAATCTGGTGCGTGCGCGGGTAGGGGCCGGTGCGCGCAGAGGACG
AGTTGGTACTCTTGTTGTGTGTTGGAGACCGAGTAGGGCCCGTATCTATG
TTGTACAATAAGGTGTCATTTGGTGCACACTTCCTTCCTTTTTACTTGCC
CGTTTAGGAACAAAGAGCACTCTCTACGCTTCCATCGCCTATCACACGGT
ATAGGGATGGGGCTTGATTGCATAGCGCTGTGTAGGGTTTTCAACTTTGA
CCCGAAAAAGTGACCTCTCTATCGTGGCATTGGTCCACTTGTATCTGTTT
TGCCGTGCATGGGTGTTGTGTTTGATATGTATGTATTGCAAGTGGTCATG
AGCGGCGTTTGGCGTTGCTACAGCGTTCCGTCGCACGAGTAGTGCCAGCA
CAAGGAGGGATCAGGCACGCAACGGAGCGTGCCACTGGCTGAAGTTGCTG
GTGGAATCACGCTCTTATGGCCTTCCCGCATTGATTGAAACCACGCCTCC
CTGTATTGATGGACCGACCCTGTATCGGAAGATCTCGGGCGTTCGCCGGG
GTGCCGTATTTTCCAACCCCGCAACCCCCCATCCTTATTTCGCAGGTCTG
TGTACAACTTGATGGCGGTTGCAGCGCGGGAAAGAGGACACTTCTATCTG
TGCGACGATACCTCCGCCACGTTCGAGAGTAAAACGAAGCTAGGCCACCC
AATGATCGACCTTCAAGACGTTGAGACGATCTCTTTGACTTCGGAGGCCT
CGGACGAGTCGTGGGCAAGGGGGGGCTTTAATAAGCGGCGGAAACCCACG
GGTATGGAGGGAGGAAACAGGAAGGCGTCTTCCCCCGCCGGAGCCGCAGC
AGCGGCAGTAGCGGCGGGGTTTGTTGGAGCGTTTGGCGGCAGTGTCGGGA
ATGGACAACACCTGAGACGTACGGGGATGGAGTTTAGCTCCGGCCAGGGA
GCGGGATCAGCGGCGTTCAGTACCGCGAGCAGCAGCAGCATCAGCAGCAG
CGACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6197:8434..9540-

>mRNA_L-elsbetiae_contig6197.14777.1 ID=mRNA_L-elsbetiae_contig6197.14777.1|Name=mRNA_L-elsbetiae_contig6197.14777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig6197:8434..9540- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGCATCTGTGGCAACACCTTTTGCAAATGGACTGCATCTGTGGC
AACACCTTTTGCAAGTCTGTGTACAACTTGATGGCGGTTGCAGCGCGGGA
AAGAGGACACTTCTATCTGTGCGACGATACCTCCGCCACGTTCGAGAGTA
AAACGAAGCTAGGCCACCCAATGATCGACCTTCAAGACGTTGAGACGATC
TCTTTGACTTCGGAGGCCTCGGACGAGTCGTGGGCAAGGGGGGGCTTTAA
TAAGCGGCGGAAACCCACGGGTATGGAGGGAGGAAACAGGAAGGCGTCTT
CCCCCGCCGGAGCCGCAGCAGCGGCAGTAGCGGCGGGGTTTGTTGGAGCG
TTTGGCGGCAGTGTCGGGAATGGACAACACCTGAGACGTACGGGGATGGA
GTTTAGCTCCGGCCAGGGAGCGGGATCAGCGGCGTTCAGTACCGCGAGCA
GCAGCAGCATCAGCAGCAGCGACAGCGTCTGTGTACAACTTGATGGCGGT
TGCAGCGCGGGAAAGAGGACACTTCTATCTGTGCGACGATACCTCCGCCA
CGTTCGAGAGTAAAACGAAGCTAGGCCACCCAATGATCGACCTTCAAGAC
GTTGAGACGATCTCTTTGACTTCGGAGGCCTCGGACGAGTCGTGGGCAAG
GGGGGGCTTTAATAAGCGGCGGAAACCCACGGGTATGGAGGGAGGAAACA
GGAAGGCGTCTTCCCCCGCCGGAGCCGCAGCAGCGGCAGTAGCGGCGGGG
TTTGTTGGAGCGTTTGGCGGCAGTGTCGGGAATGGACAACACCTGAGACG
TACGGGGATGGAGTTTAGCTCCGGCCAGGGAGCGGGATCAGCGGCGTTCA
GTACCGCGAGCAGCAGCAGCATCAGCAGCAGCGACAGC
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