mRNA_L-elsbetiae_contig6196.14774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE) HSP 1 Score: 291 bits (744), Expect = 2.970e-85 Identity = 223/523 (42.64%), Postives = 264/523 (50.48%), Query Frame = 1 Query: 1 LVVLETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVARVRLLEGLRATGVLMVDADQVAEILLSQERSXXXXXXXXXXXXXXXAPEGEEESRYWGATRDGGRFVLVDCR--AAGGGSAAEGAVRARGEAASGGCVVWRRIPPAKSVGREAAAVAEILRTLKAGAAGGTEEGEVEGGSTTSMRRKLAADRPIYTG-AVTAGA---VTAPYGAGEASGRAVGGSXXXXXXXXXXXXXEARDXXXXXXXVDDAATHVCFIGSGGDSGGDSGSNGRGAGSRSAGGRGPTTFASPAAVXXXXXXXXXXEAMAPELRLARAASRTCLAAHVCVLEGGISALDEAL------SRRGLGISGVEVAGCTVGESE 1533 LVVLE HLVLLEQLLRFHDPALA H+DKC VSPAAYATPWFVT+FA Q P PALLHLWR ++EYGDPVLHQFL+LAWLV++R L++ P +D+P S LRL+SA VD +F AAVALR TPRL C LRRAC+ A RV LL+GLRA VL VDADQVAEILL+ S +P ++ G+ + GG FVLVDCR A A G +RA GE A G V+WRR+ PA+S GREA AVAE+LR ++AG GE G + AA G +V +G+ V APYG G A G V + THVCFIG GG R T+FA+ AA EA APE RLAR ASR+CL VCVL+GG +ALD A+ S G G+ V A C+V E Sbjct: 196 LVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWFVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACF-----------------------AEDREGDGGGSCEGPGAPAGGRQQSGPPAGGPAAEPRVSLLQGLRAEEVLSVDADQVAEILLAGPSSTAVPAAAAPT-----SPATGDDGWRSGSRKFGGTFVLVDCRPPAPESEGPAGGGMRAGGEPAGDGRVIWRRVHPAESFGREAVAVAEVLREVEAGE--DALHGERSGAPCHKEAVEGAAPAHDIVGMSVVSGSSSVVAAPYG-NVGGGAAGNGLVHPTRICGHAVSGGGIRIGEVKHPVGTSTTHVCFIGCGGRXXXXXXXXXR-----------FTSFATAAA-----------EAAAPEFRLAREASRSCLTPRVCVLQGGFAALDGAMLSRGRSSENGRGVPEVGAAKCSVAAEE 665
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: D7FJC0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC0_ECTSI) HSP 1 Score: 269 bits (687), Expect = 1.190e-80 Identity = 176/321 (54.83%), Postives = 201/321 (62.62%), Query Frame = 1 Query: 1 LVVLETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVARVRLLEGLRATGVLMVDADQVAEILLSQERSXXXXXXXXXXXXXXX-APEGEEESRYWGATRDGGRFVLVDCR--AAGGGSAAEGAVRARGEAASGGCVVWRRIPPAKSVGREAAAVAEILRTLKAG 954 LVVLE HLVLLEQLLRFHDPALA H+DKC VSPAAYATPWFVT+FA Q P PALLHLWR ++EYGDPVLHQFL+LAWLV++R L++ P +D+P S LRL+SA VD +F AAVALR TPRL C LRRAC+ A RV LL+GLRA GVL VDADQVAEILL+ S XXXXXXXXX +P ++ G+ R GGRFVLVDCR A GG A G +RA GEAA G V+WRRI PA+S GREAAAVAE+LR + AG Sbjct: 143 LVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWFVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACF-----------------------AEDQEGDGGGSCEGRGAPAGGEQQSGPPAGGPAAEPRVSLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGXXXXXXXXXPTSPATGDDGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVMWRRIRPAESFGREAAAVAEVLREVGAG 440
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: M1VKD9_CYAM1 (TBC1 domain family member 23 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VKD9_CYAM1) HSP 1 Score: 83.2 bits (204), Expect = 4.810e-13 Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 28 LLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRA 399 LL LL FHDP LAV L++ ++P ++T W VTVFAR L + A+L LW L+ GDP+L F+AL L ++R+SLL A +P+ + LQS + ++ + A L + TP LRR+ Sbjct: 312 LLTALLWFHDPELAVRLERYQLTPDMFSTSWLVTVFARNLSLDAVLALWDALVLAGDPLLTIFVALVCLESNRQSLLMASEASLPEQLLSIPLQSRQDIEAAWQWARKLESRTP---AEALRRS 432
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: A0A7S2W2Q6_9STRA (TBC1 domain family member 23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Q6_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.480e-13 Identity = 53/145 (36.55%), Postives = 75/145 (51.72%), Query Frame = 1 Query: 40 LLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLI---EYGDPVLHQFLALAWLVTSRRSLLDAPGEDVP-------------------KIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYD 408 LL++HDP L HLD +SP YATPWF+T+FAR +P+ L LW + + G LH F++LA + +RR LLD+ D+P ++A R L++ EGV + G A +L TP RRA Y+ Sbjct: 257 LLQYHDPELCNHLDTHNLSPELYATPWFLTLFARSVPINVLFRLWDTYLLEEDEGGAHLHMFVSLALTLENRRGLLDSHPSDLPIYLTGVMGPLQQQQDSELAELAKRNPLKTVEGVSRIIGQARSLMRITP----VAFRRAVYN 397
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.050e-12 Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 40 LLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLR--LQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACY 405 LL +H P L LD+ + P YATPWF+T+F+ L +P L +W + +GDP LH F+ LA+++ + ++L A ++P+ RL ++S E V L A L TP+ LR A Y Sbjct: 157 LLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEAILKAEEANLPETMCRLTDGMRSVEEVRALMRTAKDLMLNTPKSFRKILRSALY 280
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: A0A8K1C6A6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6A6_PYTOL) HSP 1 Score: 80.5 bits (197), Expect = 4.290e-12 Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 40 LLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYDG 411 L+R+HDP L +LD+ ++P Y TPWF+T+F+R L +L LW I + DP L F+A A + R ++ + +P++ S + ++ E +D + A+ L TP+ L CYDG Sbjct: 227 LMRYHDPMLCNYLDQHAMTPELYVTPWFMTLFSRNLSRELVLQLWDFFILHEDPYLLHFVAYALVEVHRDAIFQSDVAMLPQVLSNITFETRERMDLVCQRALTLMETTPQSFKRDLYSVCYDG 350
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: K3WLM6_GLOUD (TBC1 domain family member 23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLM6_GLOUD) HSP 1 Score: 75.9 bits (185), Expect = 1.220e-10 Identity = 40/124 (32.26%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 40 LLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYDG 411 L+ +HDP L +LD+ ++P Y TPWF+T+FAR L + LW + DP L F+A A + ++ ++ A +P++ S + L++ ++ + A+AL TPR L CY G Sbjct: 317 LMLYHDPKLCHYLDQHDMTPELYVTPWFMTLFARNLQPELVFMLWDFFLLEEDPFLMHFVAYAMVAANKEDIMSAEIAMLPQVLSNITLKTRAELEAVCETALALSKTTPRSFERDLYSVCYGG 440
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: M4BUX6_HYAAE (TBC1 domain family member 23 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUX6_HYAAE) HSP 1 Score: 75.5 bits (184), Expect = 1.610e-10 Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 1 Query: 10 LETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGLFGAAVALRAGTPRLLCSTLRRACYDG 411 L+ L L L+ +HDP L +LD+ ++P Y TPWF+T FAR LP+ + LW + DP + F+A A + +R + A +P++ S L S ++ + A A+ TP L CY G Sbjct: 242 LQGSLQLYRLLMLYHDPELCHYLDQRDMTPELYVTPWFMTFFARSLPLDLVFCLWDLFLLEADPYMLHFVAYALVAANREKIFKAEFAMLPQVLSSLTFSSQHELEKICANARAILKSTPHSFNRDLYSICYGG 375
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: A0A024FWB8_9STRA (TBC1 domain family member 23 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FWB8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.030e-10 Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 1 Query: 10 LETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGL-FGAAVALRAGTPRLLCSTLRRACY 405 L+ L L LL +HDP L LD+ +SP Y TPWF+T+FAR L L LW L+ DP L F+A+ + +R L+ +P+ S ++ +S + V+ + A V + TP + LR+AC+ Sbjct: 245 LQCSLQLYRLLLLYHDPELCQFLDQHDMSPEIYLTPWFMTLFARNLERQMLFILWDFLLIQSDPALLHFIAVILVCDAREDLIKTDLASLPQTLSSIKFRSIQHVNSVCLRAKVCMDERTPISFKTELRKACF 377
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Match: F0W5J2_9STRA (TBC1 domain family member 23 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5J2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 8.080e-10 Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 10 LETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPVPALLHLWRRLIEYGDPVLHQFLALAWLVTSRRSLLDAPGEDVPKIASRLRLQSAEGVDGL-FGAAVALRAGTPRLLCSTLRRACY 405 L+ L L LL +HDP L LD+ +SP Y TPWF+T+FAR L + LW + DP L QF+A+ + +R L+ +P+ S ++ +S + V + A V + TP + L++AC+ Sbjct: 241 LQCSLQLYRLLLLYHDPELCQFLDQHDMSPEIYLTPWFMTLFARNLERCMIFTLWDFFLIQSDPALLQFIAVLLVCDAREELIQTDLASLPQALSSIKFRSIQHVKSICLRARVCMDERTPVSFKTELKKACF 373 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6196.14774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6196.14774.1 >prot_L-elsbetiae_contig6196.14774.1 ID=prot_L-elsbetiae_contig6196.14774.1|Name=mRNA_L-elsbetiae_contig6196.14774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp LVVLETHLVLLEQLLRFHDPALAVHLDKCCVSPAAYATPWFVTVFARQLPback to top mRNA from alignment at L-elsbetiae_contig6196:8323..10914+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6196.14774.1 ID=mRNA_L-elsbetiae_contig6196.14774.1|Name=mRNA_L-elsbetiae_contig6196.14774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2592bp|location=Sequence derived from alignment at L-elsbetiae_contig6196:8323..10914+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6196:8323..10914+ >mRNA_L-elsbetiae_contig6196.14774.1 ID=mRNA_L-elsbetiae_contig6196.14774.1|Name=mRNA_L-elsbetiae_contig6196.14774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig6196:8323..10914+ (Laminarionema elsbetiae ELsaHSoW15)back to top |