mRNA_L-elsbetiae_contig619.14768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig619.14768.1
Unique NamemRNA_L-elsbetiae_contig619.14768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig619.14768.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.400e-42
Identity = 103/125 (82.40%), Postives = 107/125 (85.60%), Query Frame = 2 
Query:  368 DGLELPSDLLLRVKSGGLQRMEADVLEAKEMEEQAXXXXXXXXXX-GRQGARVKAGDVPRSDNFRLVVLDQDEEGVGGDSSGYAGSKAHAAENAKNFLRDRMGSRKRVSHSLFKARKSLGPSPNF 739
            DGLELPSDLLLRVKSGGLQRMEADVLEA   EEQAXXXXXXXXXX GR+ AR KAGD  RSDNFRLVVLD+D+ GV  D      SKAHAAE+AKNFLRDRMGSRKRVSHSLFKARK LGPSPNF
Sbjct:   99 DGLELPSDLLLRVKSGGLQRMEADVLEA---EEQAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDE----SKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig619.14768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI4.400e-4282.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig619contigL-elsbetiae_contig619:30538..34933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1705
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig619.14768.1prot_L-elsbetiae_contig619.14768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig619 30605..33970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.7131255-UTR-L-elsbetiae_contig619:30537..306041622816678.7131255-UTR-L-elsbetiae_contig619:30537..30604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig619 30538..30604 +
1691683733.7522082-UTR-L-elsbetiae_contig619:30537..306041691683733.7522082-UTR-L-elsbetiae_contig619:30537..30604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig619 30538..30604 +
1622816678.7550557-UTR-L-elsbetiae_contig619:33970..349331622816678.7550557-UTR-L-elsbetiae_contig619:33970..34933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig619 33971..34933 +
1691683733.8086083-UTR-L-elsbetiae_contig619:33970..349331691683733.8086083-UTR-L-elsbetiae_contig619:33970..34933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig619 33971..34933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.7242367-CDS-L-elsbetiae_contig619:30604..306651622816678.7242367-CDS-L-elsbetiae_contig619:30604..30665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 30605..30665 +
1691683733.7621503-CDS-L-elsbetiae_contig619:30604..306651691683733.7621503-CDS-L-elsbetiae_contig619:30604..30665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 30605..30665 +
1622816678.7347765-CDS-L-elsbetiae_contig619:32937..333551622816678.7347765-CDS-L-elsbetiae_contig619:32937..33355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 32938..33355 +
1691683733.772739-CDS-L-elsbetiae_contig619:32937..333551691683733.772739-CDS-L-elsbetiae_contig619:32937..33355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 32938..33355 +
1622816678.7449856-CDS-L-elsbetiae_contig619:33774..339701622816678.7449856-CDS-L-elsbetiae_contig619:33774..33970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 33775..33970 +
1691683733.7857747-CDS-L-elsbetiae_contig619:33774..339701691683733.7857747-CDS-L-elsbetiae_contig619:33774..33970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig619 33775..33970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig619.14768.1

>prot_L-elsbetiae_contig619.14768.1 ID=prot_L-elsbetiae_contig619.14768.1|Name=mRNA_L-elsbetiae_contig619.14768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MAARGSRRVAVNEAPPDKVVDATDEEQSSDDEAPEEVSAAAASALAGRRR
KAEHQARQAAAAPKRKRARTSSSSAKGAGSSSNDSAIGGAASEAGGVRDG
DGLELPSDLLLRVKSGGLQRMEADVLEAKEMEEQAAAAAAAGAAGGRQGA
RVKAGDVPRSDNFRLVVLDQDEEGVGGDSSGYAGSKAHAAENAKNFLRDR
MGSRKRVSHSLFKARKSLGPSPNF*
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mRNA from alignment at L-elsbetiae_contig619:30538..34933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig619.14768.1 ID=mRNA_L-elsbetiae_contig619.14768.1|Name=mRNA_L-elsbetiae_contig619.14768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4396bp|location=Sequence derived from alignment at L-elsbetiae_contig619:30538..34933+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGAGGGGGTGAAGGCAGCGAATCTGTTGTGCTGGTGTGTGTGCAGT
GGAGAGATCTCGTCAAGATGGCCGCGCGAGGGAGCCGAAGAGTTGCCGTC
AATGAAGCTCCCCCGGACAAAGTCGTAGGTGAGCAGTCGGGCTGTCGGGG
TTGGTTGACAGCTTTCAGCGATGCCCGTGTCAGCTGCAGGAAGGGACTGG
TAGGAAAAATCGGCGTTCTTCTCATTATATATGTATGAATTCCTTGAGGT
GGACGAAGCCTGCTAGATTATGTGGAGAACGCAAACGGAGAAATGTTGGC
ATCGTCACATCATAGACTACATCGTACAAGCGGAGTAGTTTCTAGCTTGG
AGTGTAGACTAGGGGGCAGCCGCTGTAACTTTCGTAGTGTTGAGCGGGAA
CGTGCAACCCATGGCGATTTTGTTCTGTGTGATTGGCCCCTCACAACTAA
GGACGTTGTGGGTCCACCCGCTATCATAAGAGCTTTCTCGTCATATCTAC
ATGAATAGCCCCAGCCTCGTCTGAGTACCCTTCCTTTGATGTAGGAACAG
ACAGGTGTGGGTGAGGCACGATGCGGAGGAGGGAGAAGAGATATCTGGGG
AGTATGTTCGGTGCATGCCAAGACGCAGATATGGCGCTCTCCTTGTCTAT
TTTTAGTGTCCTGCGGAGGTGCTCCGTAAATTTCCAGGAAGGAGTAATTG
ATGCAAATGAAAATCACACACACATCATACCTGGTGCTGGGGCGCAGGCT
CTCGTGATCACTACAACAGCCCCGTGATGCAAAACCAAACAGGAGTGAAA
TAGGCTACAATAGATCGCCGCCGTGACAGCACTTCCCCCCCTCCCCCGTC
AGCCATTTTTTGGCTCTTCACCCCCCCCCCCGCTATGGTGAGAGCTGTGC
TTGACCTTACACACGACGCAGAAGAGGGTCGCGACAACGCCACGAAAATG
AAAGCGGGAGCCCCGCTGATCACAGCCGACACTGATCGTATCACAAAGAT
GAATGTAGGGATGGCTGCTCTGCAGCAGTAGGAACCTCTGTAGAGTTCGA
GACGAGAGAGAACACAACCGCGTCTGTCTGCTGTAGGCGCCGCTCAAAAA
AACACAAACCGCACCCGCGCTTTGGATGCACATCGCTACCACGCCCTCTT
GCGGTCGGAAAACCCTACTCGGACGCCCTCTGTGATACGCAGATAGGTGC
ATCTGCGAGCTGTGCAGGATAAGCTCTCAACTTACCTCCACATCCCGGTT
GTCAAATTGGTCACGTGCGCGCGCTACGTACATGGTTGAAAAATGAAAAC
CTAATGATGATGTCTACGAGAGAGACCACCACCGAGGTTCAGGCAGGGGT
GCACACAGTCTTGATTTTCTCCTAACCGGCTCTCACGATCTCTGCGTAAC
TCGGCCACACGATGTGCGACAGCCTTAGCTTATAGCGCCAGCGGCTCGCG
CGCGTCCTCCAAAGTGTAAATTAACATAGAGGAACCGGGATTTGTGGTGA
TCCGTCGAGGCTGTCTCCCGCGCCCGGCGTCGGCGAAAGGGAAATGGGGG
GGGGGGGCATAGCCTTGAAGGCGACATGCGTTCACCGGCCAGATTAGACG
TCCGTTGGTTGCGTGAGCGGCGAGAAAACTTGAGAAAACGTTTTTGGAAC
GTGTTTTTGCGATTTTTCGCTCCGGAAACGAGCCGAAAACGGGGTGGGAT
TATCATTTAAGAAATTTGACATCAGGAACAGGAGACTTCTTACCTCTCAC
GAGGTACTCAGAATGAGTATATTCACTGCAGTAATACTGGAACGAACAGT
CGACTCTCATGATGGACCCTAAAATATTTTTCGCAGAGAGATCGCTTAAG
CATGAAGTAATGTAGCGCACAGGGGCCGTCACCACTCGCCACCCGCAGAC
ATCTCCGCGCTTGTGGCCACTGCTCACCCGCACCGGGGTGGTACAGCTGG
TGGGGAATTCCCCATCCCCACGTCAACGGCACGATGAACGTTCCCACTGC
TGCGACCCCCGTCTTTGTAGATGAGCGCCGGCGCGTTGCGTTCGCTGGCT
TGCCTCCCAACATGCTTGTAGTTTTGTGTATGCCTCGTGTGATTCCGCTG
CTCTCCATTCTCGCCATGTCTCTCCAGATACGTGTCGTGCAAGACACAAA
AGCAGGGACGGACAACCGTGGTTTCTTACAGGGCTACAAGTACTTGGTGT
AGACGCGCTACACTCACTGCCCATTGGGCTATCGTTTTGAACCCTGCTGC
ATGTATCCCAGTGCCTATTTTCTTGATCTGTGGACACCGCCCGCAATAGC
AACGACATGCAACAAACACCCCCCTATCTCTCTCTCTTGCCCCCCTCCGA
CACGCCTGCCCACCACACCGCCTTACACAACACTACTGACGACGCAGCAG
ACGCAACGGACGAGGAGCAAAGCAGCGATGACGAGGCGCCGGAAGAGGTG
AGCGCCGCCGCGGCAAGCGCCCTCGCCGGCCGGCGCCGGAAGGCCGAGCA
CCAAGCCCGCCAGGCGGCCGCCGCTCCCAAGCGTAAGCGCGCCAGGACCT
CCTCCTCCTCTGCCAAGGGTGCCGGCAGCAGCAGCAACGACAGCGCCATC
GGAGGTGCCGCTTCTGAAGCCGGTGGTGTGCGGGACGGCGACGGGCTGGA
GCTGCCCTCGGACCTTCTACTGAGAGTCAAGTCGGGAGGTTTGCAGCGCA
TGGAGGCGGACGTTTTAGAAGCCAAGGAGATGGAGGAGCAGGCGGCAGCG
GCGGCAGCGGCGGGAGCGGCAGGTGGAAGACAGGGGGCGAGAGTTAAGGC
AGGGGATGTTCCAAGAAGGTGGGGAAAACCGGCTCGGCTGTGCGAGGGGT
GGGGGGGGGTTGTCTTGATGTGAGGATCTTTGGCCTTCGATATTTTTCTT
TCTGTGCGGTGGCGTGTATACTTCTATTTCCTCTGGCAACCGCCGCCGGC
TTTTCCAGGATTAGTCACTTGAATGTTGGAAGAAATTTGAAAGCATCAAC
TGAAGTGCCCCAGTGCCCTACTTGTGTCTTGTTTTATTCTCTCACTGGTC
ATCAGTGTACCACTTCCACCAGCCGTTCACCCTGCATGTGGTTGTGTTGA
TTTCTTTATTTTCAATCTCTTGTGTCTAATCTCTTGAGAATGTCCCACCC
AATCTCGCCACCAACCACATCTACCCGCCGTGTCTCTGCTTCGTAACCCC
CCCCCCCGATTTACCCACTGATCTCCTGTTGCCGCAGCGATAACTTCCGA
CTGGTGGTGTTGGACCAGGATGAAGAGGGCGTTGGTGGTGACAGCAGTGG
CTATGCTGGGAGCAAGGCGCACGCTGCGGAGAACGCCAAGAACTTTCTAC
GCGACCGAATGGGGAGCCGCAAGCGCGTCAGCCACAGCTTGTTCAAGGCT
CGGAAGTCCCTCGGCCCTTCGCCAAACTTCTGATGGTTGAGCTGGATCCG
GGCTGATCATCTGGCGGCCATTGGTCTTGGCTGTCGTAGATATCTCGCGG
TCGTATTCTGATGCGCCCTCTCGCGTTCTGTTGCGGTCTATTTAGTTGAA
CGACGGCATTTTTTCTCTTTGTGTGTGTGTGTGTGTGTCTGTGTGTGTTT
TGAGGCTGTTTCCGAGCCGCCCCTGCTGCTTGCCAGGAACGCCGCGTACA
AGCGCACGATGGTGATAGTATCTATATAGTGTAGATAATCCTCGTGGTTT
CGGCGTTCTTTCAGAATACCTAAACGCCAGTGCCGTGATATTGCTACACT
GCTACGGCTGCGTATGTCAGCTTTGTCATCGATTCGGTGTCCCGCGCGGT
CCTTAGTTGTCTGTCTGGCAAGTTGATATCCACTACGAGATAATCCTTAG
TTTCTGTGAGAGAAGCGGGGTTCCTCTTTCCCGTATGTGGCCCGTGAGTA
GCACGTGGCTTGTCGTGAGATGTGTCGGGGCTCTGTGGTTGTAGGGTGGT
CAAATTGAACTGCGTGCGGTCTCCGATTTGTGTCCCTTCTTCTTGTCCAC
TCCCGGGGTTGGATGCTTCTGCCCCCGAATCTCTGTGAAGTTTATCAACA
ATTGCCGTGTGTATGGTGCGGCCACCTCTTGTCAGAGGAGCACAACTGAA
CCGGCGTGACGCCCAGTGCCCTAGTTTATTTCCTCTCAAAAGGCCAACCG
ATCGTCGGTGTTCTGAAGATTTTTTCTGGTCGAAGGTTTTCAAGTTCGGA
GGGGCACTATACGCGATCGGAAAACACTTGGCTAATATATTGAGAGCCTC
AGCGACACACGCCAACATCAGCGTACAACAGTGGAGGTACTGCTGTCACT
ATCCACGGTATGGGTAACGCTGTGCGAACTGGTATTTTGTCAGTTTGCGA
TATTTTTTCGGGAGGGGTGCGTGCGATTTTGGCGCAGATACAGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig619:30538..34933+

>mRNA_L-elsbetiae_contig619.14768.1 ID=mRNA_L-elsbetiae_contig619.14768.1|Name=mRNA_L-elsbetiae_contig619.14768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig619:30538..34933+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGCGAGGGAGCCGAAGAGTTGCCGTCAATGAAGCTCCCCCGGA
CAAAGTCGTAGATGGCCGCGCGAGGGAGCCGAAGAGTTGCCGTCAATGAA
GCTCCCCCGGACAAAGTCGTAGACGCAACGGACGAGGAGCAAAGCAGCGA
TGACGAGGCGCCGGAAGAGGTGAGCGCCGCCGCGGCAAGCGCCCTCGCCG
GCCGGCGCCGGAAGGCCGAGCACCAAGCCCGCCAGGCGGCCGCCGCTCCC
AAGCGTAAGCGCGCCAGGACCTCCTCCTCCTCTGCCAAGGGTGCCGGCAG
CAGCAGCAACGACAGCGCCATCGGAGGTGCCGCTTCTGAAGCCGGTGGTG
TGCGGGACGGCGACGGGCTGGAGCTGCCCTCGGACCTTCTACTGAGAGTC
AAGTCGGGAGGTTTGCAGCGCATGGAGGCGGACGTTTTAGAAGCCAAGGA
GATGGAGGAGCAGGCGGCAGCGGCGGCAGCGGCGGGAGCGGCAGGTGGAA
GACAGGGGGCGAGAGTTAAGGCAGGGGATGTTCCAAGAAGACGCAACGGA
CGAGGAGCAAAGCAGCGATGACGAGGCGCCGGAAGAGGTGAGCGCCGCCG
CGGCAAGCGCCCTCGCCGGCCGGCGCCGGAAGGCCGAGCACCAAGCCCGC
CAGGCGGCCGCCGCTCCCAAGCGTAAGCGCGCCAGGACCTCCTCCTCCTC
TGCCAAGGGTGCCGGCAGCAGCAGCAACGACAGCGCCATCGGAGGTGCCG
CTTCTGAAGCCGGTGGTGTGCGGGACGGCGACGGGCTGGAGCTGCCCTCG
GACCTTCTACTGAGAGTCAAGTCGGGAGGTTTGCAGCGCATGGAGGCGGA
CGTTTTAGAAGCCAAGGAGATGGAGGAGCAGGCGGCAGCGGCGGCAGCGG
CGGGAGCGGCAGGTGGAAGACAGGGGGCGAGAGTTAAGGCAGGGGATGTT
CCAAGAAGCGATAACTTCCGACTGGTGGTGTTGGACCAGGATGAAGAGGG
CGTTGGTGGTGACAGCAGTGGCTATGCTGGGAGCAAGGCGCACGCTGCGG
AGAACGCCAAGAACTTTCTACGCGACCGAATGGGGAGCCGCAAGCGCGTC
AGCCACAGCTTGTTCAAGGCTCGGAAGTCCCTCGGCCCTTCGCCAAACTT
CTGACGATAACTTCCGACTGGTGGTGTTGGACCAGGATGAAGAGGGCGTT
GGTGGTGACAGCAGTGGCTATGCTGGGAGCAAGGCGCACGCTGCGGAGAA
CGCCAAGAACTTTCTACGCGACCGAATGGGGAGCCGCAAGCGCGTCAGCC
ACAGCTTGTTCAAGGCTCGGAAGTCCCTCGGCCCTTCGCCAAACTTCTGA
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