mRNA_L-elsbetiae_contig618.14761.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig618.14761.1 vs. uniprot
Match: D7G1T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI) HSP 1 Score: 654 bits (1687), Expect = 9.630e-221 Identity = 451/923 (48.86%), Postives = 530/923 (57.42%), Query Frame = 1
Query: 19 LTSPFLLDGLTPALRQLKDCRHTIPSS---------GLRRGGGCLTCKLAAKVMKEVEKEQLEAADLERQKQAAKELVWARARRDLLLMQHPTNWAGFSLLQVPHSTRRNYMPPRRYNTFDGIARVSWWVGGVEE---------DSRPKLVPGAMLTLSHQAAEATLALAEEVLGEEDPQRQATKAVAVVMEATSEVVFASRRGHPRTGVLVTKLQAAARGWLARRLARVLLLRGGCRRELDAASGAWQYVWTYRSA-SDAPAPAGDDSRR-----------------GHVGGEGLFRSWYPPSLLKNEILPSPRAALRRVEGEEKKREARLALANQLLHNQKDQLNKRDVRAARLLALAEVVKLVERATVSLESAALSCFGIDSKLLSVSVQVLHPRGGEAGDGAREAVVSEIMSTWHLIDTKVRERAEASRIRAERAAASGKGKSPRKNSPSREGG--GRQTPRPG---GKG---GKKEAQLLVPTTNDNLAEFEKRILQDSLHEGAAAAVASLLQRKMVPVAIREASRLGRNKEAWDRKGSSPFGLGIQIFPPWARASHRFVALAHRGRLVAVSQASPFVHWETLASKASMAYILRGVLRPFLENADLLRAMCVDGHSSVDGVAA--ATATGRPTGITGRSREGETRGGGEWSPPPSAGTPPNAAATTAPAEENGESCEDGRA-------AGDCPWGYRSSLSLKGCWKVESWAAARRDSSVELGFDSAAFDVFVRPEDESG--------EAAVAAGRRP-----------------AAAAVVTNVVPFRLADGLPRELGPLLFDKSVLASLLAGDA-EHRPPSRDGGKRRKGKHTGTT--EREGADSSPGETPEDEETEEA-RWVRKKASNGTGQVLSHVHYVDAAEGGKVDVRIRGEPVDAETLATAGLPQDMVALVV 2541
+ S + GLTPALRQLKDCRHT PSS R G GCLTC P R + P N G + G+EE DSRPKLVPGAMLT S+ A A A AEEVL EEDP R+ATKA A+V EAT+EV FA+RR HPRT VLVT+LQA RGWLARRLARVLLLRGGCRRELD ASGAWQYVW++R+A AP A R G GGEGLFR+WYPP+LLKNE LPSPRAA RRVEGE +KREARLALAN LL +Q+ +LN+RD RAARLLAL EVVKLVERA SLE AAL+CFG S+ L++SV+VLHPRGGE GDGAREAVV+EIMS WH ID +VRE+ EA+R+RAER + KGKSP K SP+R GG R+TPR G G+G G++EA+L VPTTN+NLA FE+ A LL R+ V L +EA R P G IQ+FPPWA ASHRF+AL HRG LVAVSQASPFV WE LA + ++ +L PFLEN DLL+A D V A AT+ GR T S ET G G + + A A + G E+G A WGYRSSLS KGCWK+++ A ARRDSS++LGFDS AFD+FV P+++ G AA + G++ A AVVTN VPFRLADGLPRELGPLLF+ + ASLLAGDA E P SR G +RK +H T + E S P E E+ E EE W RKK G++LSH V+VRIRGE + A+ LA AGLP D+ +LVV
Sbjct: 1 MQSALMAGGLTPALRQLKDCRHTFPSSKWDTRDSQGAPRHGQGCLTCN------------------------------------------------------GPRPERPTELEP---NNETGTGDFGAILNGIEEGGRVERCGGDSRPKLVPGAMLTFSNTAVAAVKAFAEEVLAEEDPPRRATKAAAIVKEATTEVSFANRRNHPRTEVLVTRLQAVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPGAAATAPGRASYAGGIGGGGYRSPACGGDGGEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEEAALTCFGTGSEPLAISVKVLHPRGGEPGDGAREAVVTEIMSAWHRIDAQVREQEEAARLRAERT--NDKGKSP-KTSPNRGGGVSARRTPRSGSREGRGKSTGRREAKLSVPTTNENLAAFEQ-------------IAARLLARRRV-----RGGGLSSPEEASARL--HPRGFKIQVFPPWALASHRFIALVHRGSLVAVSQASPFVFWENLADRKKTNQLIADILGPFLENPDLLKAAFADEPGERASVPATKATSAGRSTTNNAVSTARETPGDGAGGDGEQSTSSSVAEAGDTGVRQIGRENEEGSXXXXXXXXADGGMWGYRSSLSSKGCWKIDARAVARRDSSLKLGFDSVAFDLFVLPDEKKGGKKGGQEPPAAPSVGKQRHATRVNDHEEDESSSPRATRAVVTNAVPFRLADGLPRELGPLLFEDTSDASLLAGDAAEDHPQSR--GAKRKPEHPRVTVSDPELVGSRPEEAEEETEEEEGYEWERKKDPRSAGKILSHTRRGSGPSEAAVEVRIRGETLGADQLARAGLPHDLFSLVV 841
BLAST of mRNA_L-elsbetiae_contig618.14761.1 vs. uniprot
Match: A0A6H5KM98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM98_9PHAE) HSP 1 Score: 363 bits (932), Expect = 1.430e-114 Identity = 225/419 (53.70%), Postives = 256/419 (61.10%), Query Frame = 1
Query: 19 LTSPFLLDGLTPALRQLKDCRHTIPSS---------GLRRGGGCLTCKLAAKVMKEVEKEQLEAADLERQKQAAKELVWARARRDLLLMQHPTNWAGFSLLQVPHSTRRNYMPPRRYNTFDGIARVSWWVGGVEE---DSRPKLVPGAMLTLSHQAAEATLALAEEVLGEEDPQRQATKAVAVVMEATSEVVFASRRGHPRTGVLVTKLQAAARGWLARRLARVLLLRGGCRRELDAASGAWQYVWTYRSA-SDAPAPAGDDSRRGHVGG-----------------EGLFRSWYPPSLLKNEILPSPRAALRRVEGEEKKREARLALANQLLHNQKDQLNKRDVRAARLLALAEVVKLVERATVSLESAALSCFGIDSKLLSVSVQVLHPRGGEAGDGAREAVVSEIMSTWHLIDTKV 1185
+ S + GLTPALRQLKDC+HT PSS R G GCLTC + E +E P N G FD I G VE DSRPKLVPGAMLTLS+ A A A AEEVL EE+P ++A KA+A+V EAT+EV FA+RR HPRTGVLV A RGWLARRLARVLLLRGGCRRELD ASGAWQYVW++R+A AP R + GG EGLFR+WYPP+LLKNE LPSPRAA RRVEGE +KREARLALAN LL +Q+ +LN+RD RAARLLAL EVVKLVERA SLE AALSCFG DS+ L++SV+VLHPRGGE DGAREAVV+EI+S WH IDT+V
Sbjct: 1 MQSALMAGGLTPALRQLKDCQHTFPSSQWDTRDSQGAPRHGQGCLTCNVRHGPRPERPRE-----------------------------LEPNNETGTG-------------------DFDAILNGIEGGGQVERRGGDSRPKLVPGAMLTLSNTAVAAVKAFAEEVLAEENPAQRAKKALAIVKEATTEVAFANRRNHPRTGVLV----AVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPTATAGPGRASYAGGGSGGXXYRSPVXXXXXXEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEDAALSCFGTDSEPLAISVKVLHPRGGEPWDGAREAVVTEIISAWHRIDTQV 367
BLAST of mRNA_L-elsbetiae_contig618.14761.1 vs. uniprot
Match: A0A6H5KN18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN18_9PHAE) HSP 1 Score: 331 bits (848), Expect = 8.580e-100 Identity = 255/552 (46.20%), Postives = 304/552 (55.07%), Query Frame = 1
Query: 1168 LIDTKVRERAEASRIRAERAAASGKGKSPRKNSPSREGG--GRQTPRPG---GKG---GKKEAQLLVPTTNDNLAEFEKRILQDSLHEGAAAAVASLLQRKMVPVAIREASRLGRNKEAWDRKGSSPFGLGIQIFPPWARASHRFVALAHRGRLVAVSQASPFVHWETLASK---------------------------------ASMAYILR-----------------GVLRPFLENADLLRAMCVD---GHSSVDGVAAATATGRPTGITGRSRE--GETRGG-GEWSPPPSAGTPPNAAATTAPAEENGESCEDGRAAGDCP----WGYRSSLSLKGCWKVESWAAARRDSSVELGFDSAAFDVFVRPEDES----GEAAVAAGRRP-------------------AAAAVVTNVVPFRLADGLPRELGPLLFDKSVLASLLAGDA-EHRPPSRDGGKRRKGKHTGTTEREGADSSPGETPEDEETEEAR--WVRKKASNGTGQVLSHVHYVDAAEGGKVDVRIRGEPVDAETLATAGLPQDMVALVV 2541
+ +VRE+ EA+R+RAER + KGKSP K SP+R G R+TPR G G+G G++EA+L VPTTN+NLA FE+R+LQDSLHE A+ AVASLLQRK V I EASRLGRN++AW ++ SSPFGLG+ FPPWA ASHRF+AL HRG LVAVSQASPFV WE L S+ AS I+R +L PFLEN DLL+A D +SV A +A+ T +RE G+ GG GE SP S A A + G E+G AA WGYRSSLS KGCWK+++ AA RRDSS++LGFDS AFD+FV P ++ GE A R A AVVTN VPFRLADGLPRELGPLLFD + ASLLAGDA E+ P SR KRR T D S E E+E EE W KK GQ+LSH H V+VRIRGE + A+ LA AGLP D+ LVV
Sbjct: 1 MTQVEVREQEEAARLRAERT--NDKGKSP-KTSPNRGVGVSARRTPRSGSREGRGKSAGRREAKLSVPTTNENLAAFEQRLLQDSLHEDASEAVASLLQRKRVLGCIHEASRLGRNEKAWGKQSSSPFGLGV--FPPWALASHRFIALVHRGSLVAVSQASPFVFWENLVSECETSDYCIVHAQTHRRKRFNVLVTEYLNISSLWASPLIIVRKNINMKAERRKTNQLIADILGPFLENGDLLKAALEDEQGARASVPANRATSASRATTNAVSTAREIPGDGAGGDGEQSPSSSV-----AEAGDTGVRQIGRENEEGSAAAAAADGGMWGYRSSLSSKGCWKIDARAAGRRDSSLKLGFDSVAFDLFVLPHEKGDKKGGEEPAAPPERKQRHATRVNGHEEAKSSSHRATRAVVTNAVPFRLADGLPRELGPLLFDDTSDASLLAGDAAEYHPQSRVA-KRRPEHPLVTVSDPELDGSELEEVEEEAEEEHEYGWESKKDPRSAGQILSHTHRGSGPSEAAVEVRIRGETLSADQLARAGLPHDLFGLVV 541 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig618.14761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig618.14761.1 >prot_L-elsbetiae_contig618.14761.1 ID=prot_L-elsbetiae_contig618.14761.1|Name=mRNA_L-elsbetiae_contig618.14761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=847bp MLKPRQLTSPFLLDGLTPALRQLKDCRHTIPSSGLRRGGGCLTCKLAAKVback to top mRNA from alignment at L-elsbetiae_contig618:20765..28227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig618.14761.1 ID=mRNA_L-elsbetiae_contig618.14761.1|Name=mRNA_L-elsbetiae_contig618.14761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7463bp|location=Sequence derived from alignment at L-elsbetiae_contig618:20765..28227- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig618:20765..28227- >mRNA_L-elsbetiae_contig618.14761.1 ID=mRNA_L-elsbetiae_contig618.14761.1|Name=mRNA_L-elsbetiae_contig618.14761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5082bp|location=Sequence derived from alignment at L-elsbetiae_contig618:20765..28227- (Laminarionema elsbetiae ELsaHSoW15)back to top |