mRNA_L-elsbetiae_contig617.14747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig617.14747.1
Unique NamemRNA_L-elsbetiae_contig617.14747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE)

HSP 1 Score: 465 bits (1196), Expect = 4.180e-160
Identity = 277/418 (66.27%), Postives = 308/418 (73.68%), Query Frame = 1
Query:   22 MSWCLVIAFLLGTPIVVPCDA---VVYGGSARPSYGMRSYEDSGAIRDSAAPATAYDGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQ---IHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQELDAEXXXXXXXXXGQLPDASVDMR-----MEVGGEGGSRAWVAKGNVRRRTRGKSVTKVDHDGDDGVVRSFRSGALDDKVELL 1242
            MSWCL+I  LLG P + PC     V Y G A P+ G      +G +    A   + +GGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMA  MQACLPS + S  L   S  D +            A+ DSGLD VQR++LRV AAA LL+RHLFRYQGTVSAALVLGGVD IG H+YQ   IHEGGS AEVEFTAMGSGSLAALSVLERG+R+ +TE EAKELVL+ IAAGIDNDLGSGSNID+CVITA+RGLEHHRGAW DPG+     D  A R+L + +++           QL DAS D       + VGGEGGS AWV  GNVRRR R KSV KVDHD DDG +R +R  ALDDK+E+L
Sbjct:    1 MSWCLLIVLLLGAPFLPPCGGSLHVFYSG-ATPT-GSAEGATAGLL---GASDRSMEGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSR-SPLLQSQSRADGER---------PLASCDSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDD---DGIAARELPEGIES-------WQPNQL-DASDDTESGGFDVIVGGEGGSGAWV--GNVRRRNREKSVMKVDHD-DDGALRRYRCSALDDKIEVL 389          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 4.240e-124
Identity = 202/260 (77.69%), Postives = 217/260 (83.46%), Query Frame = 1
Query:  226 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQ 1005
            MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMA  MQACLPS + S  L   S  D +          + A+ DSGLD VQR++LRV AAA LLKRHLFRYQGTVSAALVLGGVD IG H+YQIHEGGS AEVEFTAMGSGSLAALSVLERG+R+ LTE EAKELVL+ IAAGIDNDLGSGSNID+CVITA+RGLEHHRGAW DPG+     D  A R+L +
Sbjct:    1 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSR-SPLLQCQSRADEER---------ALASCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDD---DDIAARELPE 247          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.760e-70
Identity = 132/199 (66.33%), Postives = 148/199 (74.37%), Query Frame = 1
Query:  547 FATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQ---IHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQELDAEXXXXXXXXXGQLPDASVDMRME-----VGGEGGSRAWV 1119
             A+ DSGLD VQR++LRV AAA LLKRHLF+YQGTVSAA VLGGVD IG H+YQ   IHEGGS AEVEFTAMGSGSLAALSVLERG+R+ LTE E KELVL+ IAAGIDNDLGSGSNID+CVITA+ GLEHHRGAW DPG+     D  A R+L + ++            QL DAS D   +     VGGEGGS AWV
Sbjct:   77 LASCDSGLDEVQRKHLRVGAAALLLKRHLFQYQGTVSAAFVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQETKELVLEGIAAGIDNDLGSGSNIDLCVITAEGGLEHHRGAWTDPGLDD---DGIAARELPEGIER-------LEPNQL-DASGDSERDGFDVVVGGEGGSGAWV 264          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S3G0S4_9EUKA (Proteasome subunit beta n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G0S4_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 3.200e-57
Identity = 122/244 (50.00%), Postives = 149/244 (61.07%), Query Frame = 1
Query:  211 ASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHR 936
            A  +AMKTGTTI GVVF+GGVVLGADTRATGG  V D NC+KIH ++ NI CCGAGT+AD   +T    ++L LLR+A G +                                               +RVAAAA  L ++L+RYQG VSAALVLGGVD  G  LY IH  GS   V F  MGSGSLAA++V+E G++D+LT  EAK LV  AI AGI NDLGSGSN+D+ +IT+D G+E+ R
Sbjct:   31 AKPKAMKTGTTICGVVFDGGVVLGADTRATGGSVVMDPNCEKIHFISKNIYCCGAGTAADTENVTGMMSSQLELLRLATGRE-----------------------------------------------IRVAAAATSLAQYLWRYQGHVSAALVLGGVDFTGPSLYSIHPHGSVDFVPFITMGSGSLAAMAVMESGYKDKLTREEAKMLVHDAILAGIQNDLGSGSNVDLNIITSD-GVEYLR 226          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A812N4R2_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N4R2_9DINO)

HSP 1 Score: 196 bits (499), Expect = 1.260e-56
Identity = 120/249 (48.19%), Postives = 145/249 (58.23%), Query Frame = 1
Query:  220 RAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGV 960
            +A+KTGTTI GVVF+GGVVLGADTRAT G  V D+NC+KIH LA NI CCGAGT+AD   IT+   + L LLR   G Q+                                               RV  A  LLKR LF+YQG +SAALVLGGVD  G HLY ++  GS  ++ F +MGSGSLAA+++LE G++D LTE EAK LV +AI AGI NDLGSGSN+D+ +I  D   E  R      GV
Sbjct:   24 KALKTGTTICGVVFDGGVVLGADTRATEGTVVADKNCEKIHYLAPNIHCCGAGTAADTENITQLTASNLELLRRQMGTQS-----------------------------------------------RVVTAMTLLKRRLFQYQGHISAALVLGGVDCTGPHLYTVYPHGSTDKLPFVSMGSGSLAAMAMLESGYKDGLTEDEAKALVARAIRAGIFNDLGSGSNVDLTIIRTDGATEQLRSYESQNGV 225          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: W7TKR2_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKR2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 5.610e-56
Identity = 120/230 (52.17%), Postives = 143/230 (62.17%), Query Frame = 1
Query:  223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVI 906
            AMKTGTTIAGV F+ GVVLGADTRATGG  V D+NC+KIH LA NI CCGAGT+AD  + TE   ++L LLR++ G      SP                                          RV  A  +LKR LFRYQG VSAALVLGGVD+ GAHLYQI+  GS  +  +  MGSGSLAA+SV E G ++++TEAEA ELV +AI AGI NDLGSGSN+D+ +I
Sbjct:   43 AMKTGTTIAGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISSQLDLLRLSTG------SPS-----------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIELVKEAILAGIYNDLGSGSNVDLTII 225          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S2UAG4_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAG4_9STRA)

HSP 1 Score: 195 bits (496), Expect = 5.610e-56
Identity = 117/242 (48.35%), Postives = 144/242 (59.50%), Query Frame = 1
Query:  223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGA 942
            A KTGTTI G+ ++GGVVLGADTRATGG  V D++C+KIH LA NI CCGAGT+AD  + TE   +++ LLRM  G+ +                                               RV  A  LLKR LF+YQG VSAALVLGG DA G H+YQI+  GS   + +T MGSGSLAA+SV E G +D + EA+A ELV ++I AGI NDLGSGSN D+CVI  D  ++  RGA
Sbjct:   43 ATKTGTTIVGLTYKGGVVLGADTRATGGTEVADKDCEKIHYLAPNIYCCGAGTAADTEKTTELISSQMELLRMNTGVSS-----------------------------------------------RVVTACTLLKRMLFKYQGHVSAALVLGGCDATGPHVYQIYPHGSTGRLPYTTMGSGSLAAMSVFETGWQDNMEEADAVELVKRSILAGIFNDLGSGSNCDICVIRTDGSVQMDRGA 237          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: C1EBX1_MICCC (Proteasome subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBX1_MICCC)

HSP 1 Score: 194 bits (494), Expect = 1.400e-55
Identity = 113/232 (48.71%), Postives = 142/232 (61.21%), Query Frame = 1
Query:  223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADR 918
            AMKTGTTI GV F+GGVVLGADTR+T G+TV D+NC+KIH +A NI CCGAGT+AD   +T            GM A       +  LHR                           +  ++  RV  A  +LK HLF+YQG V AALVLGGVD  G HL+ +H  GS   + F  MGSGSLAA++V E   ++++TE EAKE+V ++I AGI NDLGSGSN+D+CVITAD+
Sbjct:   44 AMKTGTTITGVCFKGGVVLGADTRSTNGETVADKNCEKIHYIAPNIYCCGAGTAADTEAVT------------GMIAS------ALELHR---------------------------LATKRKSRVVTALTMLKSHLFKYQGHVGAALVLGGVDINGPHLFSVHPHGSSDSLPFATMGSGSLAAMAVFEADFKEDMTEEEAKEIVARSIRAGIFNDLGSGSNVDLCVITADK 230          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.690e-55
Identity = 118/245 (48.16%), Postives = 145/245 (59.18%), Query Frame = 1
Query:  220 RAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWK 948
            RA  TGTTI G V++ G+VLGADTRATGG  VCD+NC+KIH LA NI CCGAGT+AD  + TE   ++L LLR++ G Q+                                               RV  A  +LKR LFRYQG VSAALVLGGVDA G HLY I+  GS  ++ +  MGSGSLAA+SV E G+++++TE EA +LV +AI AGI NDLGSGSN D+ VI     +  HRG  K
Sbjct:   53 RAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS-----------------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGSSDKLPYVTMGSGSLAAMSVFETGYKEDMTEEEATDLVKEAILAGIFNDLGSGSNCDITVIRKGE-VSRHRGYVK 249          
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S1U940_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U940_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.200e-55
Identity = 119/253 (47.04%), Postives = 150/253 (59.29%), Query Frame = 1
Query:  217 TRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRM-AGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITAD------RGLEHHRGAWK 948
            T A KTGTTI GV F+ GVVLGADTRATGG  +CD+NC+KIH +A NI CCGAGT+AD  + TE   ++L L R+ AGG+++                                               R   A  LLKR LFRYQG +SAALVLGGVDA+G HLY ++  GS +++ + +MGSGSLAA+SVLE  +++++ EAEA  +V  AI AGI NDLGSGSN+DV VI  D      R +E  RG  K
Sbjct:   50 TSAKKTGTTICGVTFKNGVVLGADTRATGGSEICDKNCEKIHYIAPNIFCCGAGTAADTEKTTEMIASQLELARLNAGGVES-----------------------------------------------RTVTACTLLKRMLFRYQGHISAALVLGGVDAMGVHLYDVYPHGSTSKLPYVSMGSGSLAAMSVLEMKYKEDMEEAEAIAVVKDAIMAGIMNDLGSGSNVDVTVIRKDKLPSGERSVEQFRGLEK 255          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNE6_9PHAE4.180e-16066.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTB7_ECTSI4.240e-12477.69Proteasome subunit beta 2 n=1 Tax=Ectocarpus silic... [more]
A0A6H5L5A8_9PHAE1.760e-7066.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3G0S4_9EUKA3.200e-5750.00Proteasome subunit beta n=1 Tax=Palpitomonas bilix... [more]
A0A812N4R2_9DINO1.260e-5648.19Proteasome subunit beta n=1 Tax=Symbiodinium sp. K... [more]
W7TKR2_9STRA5.610e-5652.17Proteasome subunit beta n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2UAG4_9STRA5.610e-5648.35Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
C1EBX1_MICCC1.400e-5548.71Proteasome subunit beta n=1 Tax=Micromonas commoda... [more]
A0A835ZKI2_9STRA2.690e-5548.16Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
A0A7S1U940_9STRA3.200e-5547.04Proteasome subunit beta n=2 Tax=Phaeomonas parva T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig617contigL-elsbetiae_contig617:1491..5291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.2
Seed ortholog evalue4e-101
Seed eggNOG ortholog2880.D7FTB7
KEGG koko:K02739
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0173@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Ec32 ortholog descriptionproteasome subunit beta 2
Ec32 orthologEc-05_000270.1
Exons6
Model size1245
Cds size1224
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.7136748-UTR-L-elsbetiae_contig617:1490..15111622816675.7136748-UTR-L-elsbetiae_contig617:1490..1511Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig617 1491..1511 +
1691683731.4743276-UTR-L-elsbetiae_contig617:1490..15111691683731.4743276-UTR-L-elsbetiae_contig617:1490..1511Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig617 1491..1511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.7283502-CDS-L-elsbetiae_contig617:1511..17541622816675.7283502-CDS-L-elsbetiae_contig617:1511..1754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 1512..1754 +
1691683731.4880466-CDS-L-elsbetiae_contig617:1511..17541691683731.4880466-CDS-L-elsbetiae_contig617:1511..1754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 1512..1754 +
1622816675.7396038-CDS-L-elsbetiae_contig617:2414..25581622816675.7396038-CDS-L-elsbetiae_contig617:2414..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 2415..2558 +
1691683731.5014443-CDS-L-elsbetiae_contig617:2414..25581691683731.5014443-CDS-L-elsbetiae_contig617:2414..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 2415..2558 +
1622816675.7506433-CDS-L-elsbetiae_contig617:2842..31421622816675.7506433-CDS-L-elsbetiae_contig617:2842..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 2843..3142 +
1691683731.5097396-CDS-L-elsbetiae_contig617:2842..31421691683731.5097396-CDS-L-elsbetiae_contig617:2842..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 2843..3142 +
1622816675.7653441-CDS-L-elsbetiae_contig617:3905..39861622816675.7653441-CDS-L-elsbetiae_contig617:3905..3986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 3906..3986 +
1691683731.5183072-CDS-L-elsbetiae_contig617:3905..39861691683731.5183072-CDS-L-elsbetiae_contig617:3905..3986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 3906..3986 +
1622816675.7794726-CDS-L-elsbetiae_contig617:4493..47101622816675.7794726-CDS-L-elsbetiae_contig617:4493..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 4494..4710 +
1691683731.5267131-CDS-L-elsbetiae_contig617:4493..47101691683731.5267131-CDS-L-elsbetiae_contig617:4493..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 4494..4710 +
1622816675.7920532-CDS-L-elsbetiae_contig617:5052..52911622816675.7920532-CDS-L-elsbetiae_contig617:5052..5291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 5053..5291 +
1691683731.534985-CDS-L-elsbetiae_contig617:5052..52911691683731.534985-CDS-L-elsbetiae_contig617:5052..5291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig617 5053..5291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig617.14747.1prot_L-elsbetiae_contig617.14747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig617 1512..5291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig617.14747.1

>prot_L-elsbetiae_contig617.14747.1 ID=prot_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=408bp
MSWCLVIAFLLGTPIVVPCDAVVYGGSARPSYGMRSYEDSGAIRDSAAPA
TAYDGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCD
RNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPK
FSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLL
KRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLA
ALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRG
LEHHRGAWKDPGVGSGGGDAAAGRQLAQELDAEQQQQQQQQQGQLPDASV
DMRMEVGGEGGSRAWVAKGNVRRRTRGKSVTKVDHDGDDGVVRSFRSGAL
DDKVELL*
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mRNA from alignment at L-elsbetiae_contig617:1491..5291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig617.14747.1 ID=mRNA_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3801bp|location=Sequence derived from alignment at L-elsbetiae_contig617:1491..5291+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCAGGACGGGTGTGCAGGATGTCGTGGTGCCTAGTGATAGCATTTCT CCTCGGTACGCCTATCGTGGTTCCATGCGATGCAGTGGTTTACGGAGGTA GCGCTCGTCCCAGCTATGGCATGCGGTCGTACGAGGACAGCGGCGCAATT AGGGATTCCGCCGCACCTGCAACGGCGTATGACGGCGGGGCTGAGGCTCT CCGGAGGTTTGCGTCGACACGCGCCATGAAAACGGGTACCACGATTGCTG GTGTGGTGTTCGAGGTGCGTATTGCACGTGCGCAACCCAACGCCTCTCTG CCGGAGAGGGCACAAACGTCAATCATTTCGCACCTGTGTGCATTTCGCGG CACATGTGTTGTACAAACTCTGTTTCTTGCTACAGAGTTTCCGTAACACA CAGATCAACGGCGCGATTGTCCTTGTCTACCCAGTATTCCTTCCTCTGAC CCAGTTTCCAACCCTTCTGCCCACCCCTAACTTGTACCACCAAGGTTTTG ATCTGTAGTACTTTCGATAACACCCCCCCCCCCCGCATCGCGTGCAACTC TTTTCGGAAGAACGCTCACCCTTATTTCGTATACGTACGTATAGGCGAAT TGCCATTGTACGATGTCCTGTTATTCAGGCAGCATATAATACACGGGTGT ACCGTAGGCGCTTAGACGCCACAGATGCCGCCCCGAGAGCTGTCTGTTGC TGCTGGCTACCACCGCGCGCAAAATTCTCTGGACGTGCGGGTAGGTCTAC CGCCTCCATGTGTATGCATCTAGGCGGCCTTGTGCCTTACAACCACGTGA TCCGGCTATCTGGTTGCCGTTGGAGGATCGGGGGACTAGATATTCCATCT GTCTGCGAAGCCCCCCCAAAACCCTTGCTCGAAAAAAAAAACGGCCTCGC TTGATCGTTGTCGTCTTCCGCAAGGGGGGGGTGGTCTTGGGTGCGGATAC TCGAGCAACGGGGGGGAAGACGGTGTGCGACCGCAACTGCGACAAGATTC ACATCCTCGCCTCCAACATCGCCTGCTGCGGGGCTGGAACCAGCGCCGAC GCCGTCAGGATTACGGAGGTTGGTTTCGTCGTCGTTGTTGTGGTCGGGGT TGTGGCTGTTGTTTTTGTGGTTGTTGTGGTTGTTGCTGATTTTGCTGATA CTGCTGGTGCTGCTACTTGTTGTTGTTGCTGCTGCTTGTCGCTGTTGCTG GTGTTCTGTTGCTGGTGTTCTGGTGCTGTTGTTGTTGCAGCTTAATTGGT GATGGGGGTGTCGGCGACGGCAACAACCACCACTCAACCCCGTGCCTGCG GACCCTACCCGGCTTCGTTCTGCTCTACACTTTTACCCTGTCCTGTATCC AGGGCGCCCGCCTGGCGCTTTTGCGCATGGCCGGGGGGATGCAAGCCTGC CTCCCCTCCCCTAAGTTTTCCCGCACGCTGCATCGGGCCTCAAACGGCGA CAACGACGAAGGCGACGGCGACAGCAACAGCAACATCTCGTTCGCCACCC GCGACAGCGGCCTGGACGTGGTGCAGCGGCAGTACCTTCGGGTCGCGGCA GCGGCGTTTTTGTTGAAACGGCACCTTTTCCGGTACCAGGGCACGGTCTC CGCGGCCCTCGTGCTGGGAGGGGTTGACGCCATCGGGGCACATCTGTATC AGGTGAGCGCCGCCCCCGCCTCCACAGCAAGCAGGCAGCGTAGCGTTTTG GCGAGAGAAGAGTCGGTAGTCGGTACCATGCCGTCGCCATAGGCAGGAGT GGTGCGGCGGCGGAGGTACACGGTCTGTGCGCGCTCTGTGGCAAGGTGCT GTTCGTGCTACATGTATGGGCACGCACGCACACGCGACCTGAAAGCTATG AAGTACGGAAAACTCAGCAGACAAACCTGACTCGTTCTATTGCATTCCTC CTGAGTCAAGTCGGCTCTCTGTATGAGGAGAGAGGGGGTAACCGCCGCCG CCGCCGAAGTCGATGCTTGTTCGGTGGACTGTTATGTGTATCTATCGAAG TATATCATCGTCGAGATACTTTTCCCCACGATATCTACAGCTTGCAAGGT TATGTGTTCTAGCCTGCGTAGCAGGCTCGCTCACTTGGAGTGGCGCTGTA CGTTTCGTCTTCGGAAACATCGTCCGTCGAACCCACTCGTTCCCCTCTCT CTGCGTGGGCGAAAGCACAGCCAACGCAGCATTACTCAGCACGATTGCAT CCCGCACTTCGCACGCCGTTTTCGTTCGTGTGCGATTTACAATCCCTCTT GTGTTGAGCGGCACAAGGCAGCCGTCTTCGCCAACACTATTGCGGTACCA TCGCGCATTACCCTTCACGGGCGTGAAGGCACATAGAACTCACCCATTTC CTTCCGCACCGCAAGCGCCGCTCTTACGAACCACGTTTTTTTGTTCTTGC TTTGGCGCTCTCCAGATTCACGAGGGGGGAAGCTTCGCCGAGGTGGAGTT CACCGCCATGGGTAGCGGGAGCCTCGCAGCGCTAAGCGTATTGGAGGTAT GTGCGTACCCATAACATCATACATACGGACCCCTGACGCTAGAGGACATT GCGGGATACGTTGAGTATTGGTTGTGCCCTACAACAGTAAAACACAGTCG TACAGATACATAATTTACCTCTAGCGTACCATTCGCCATCCCTTCCATTG TGTGGATTACCAGTACCAAATACACGCGAAGGGGAACTTGCTGGAAAGTT GAGGCATGGTTCTTCACGATGCGATTAGCGGGGCCCCCGAGGAGCCCAGT GAGTGCAATCACCAATTACCAAATAACAATTACCTCTTGAGTGCAAAAAC CGATCCGAACAGCGGGAGCACGACGAACAGCAACGTCGGTGCGAGGGTTC CACCAACGTCGTATCGACCCCGCCTGCATCTTCACATCTTGTCTCATCAC CATTATTGAGCATTAACTCGTCCGTGCGTGTTGTATTTGTTTTCTGGCGT CGCGGCGTCGTGCGTCGTGCACCGTACATCATGCACCATGCATCATGCAT CAGCGGGGCCACCGCGATGAGCTGACCGAAGCGGAAGCGAAGGAGCTCGT CCTGCAAGCGATCGCCGCGGGAATAGACAACGACTTGGGCAGCGGGAGCA ACATCGACGTGTGCGTCATCACCGCCGACAGGGGCCTGGAGCACCACAGG GGGGCTTGGAAAGACCCAGGTGTCGGCAGCGGCGGCGGCGATGCTGCTGC TGGTCGACAGCTCGCTCAAGGTCAGTCCTCGCAAACCCGTTGTGCAGAAG GAAGGAATTCAAGACTAATCAGCGCATCGAGGTTCAGCCATTACCTTTGC ACCCCAAGATTTAAAAATGCAGCCCTCGTTTTATGTTCTTGGAAGAACAA CCTCTGTAGATGCACACCGCAGTGTAGCGACCCTTCCCGCCCATCGACGT GCAGCCATTGCCAGTGCACCCCAAGATTTTAAAAAATGCAGCCCTCGTTA TATCTTCTTGGGAGAACAACCTCTGTAGACTGCACTGTAGACTGCACACC GCAGTGTGGCGACCCTTCCCAGGATTGAACGCGTCCTCGCTCGCCCCTTG TGCTGACCGCAGAATTGGACGCTGAACAGCAGCAGCAGCAGCAGCAGCAG CAGGGCCAGCTCCCGGACGCGAGTGTCGACATGAGGATGGAGGTTGGCGG GGAAGGCGGGTCGCGGGCGTGGGTGGCGAAGGGAAACGTGCGGCGAAGGA CGAGAGGGAAGAGCGTGACGAAGGTGGACCATGACGGCGACGACGGAGTT GTGCGGAGCTTCCGGAGTGGCGCGCTCGACGACAAGGTCGAATTGCTGTG A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig617:1491..5291+

>mRNA_L-elsbetiae_contig617.14747.1 ID=mRNA_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2448bp|location=Sequence derived from alignment at L-elsbetiae_contig617:1491..5291+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTGGTGCCTAGTGATAGCATTTCTCCTCGGTACGCCTATCGTGGT
TCCATGCGATGCAGTGGTTTACGGAGGTAGCGCTCGTCCCAGCTATGGCA
TGCGGTCGTACGAGGACAGCGGCGCAATTAGGGATTCCGCCGCACCTGCA
ACGGCGTATGACGGCGGGGCTGAGGCTCTCCGGAGGTTTGCGTCGACACG
CGCCATGAAAACGGGTACCACGATTGCTGGTGTGGTGTTCGAGATGTCGT
GGTGCCTAGTGATAGCATTTCTCCTCGGTACGCCTATCGTGGTTCCATGC
GATGCAGTGGTTTACGGAGGTAGCGCTCGTCCCAGCTATGGCATGCGGTC
GTACGAGGACAGCGGCGCAATTAGGGATTCCGCCGCACCTGCAACGGCGT
ATGACGGCGGGGCTGAGGCTCTCCGGAGGTTTGCGTCGACACGCGCCATG
AAAACGGGTACCACGATTGCTGGTGTGGTGTTCGAGGGGGGGGTGGTCTT
GGGTGCGGATACTCGAGCAACGGGGGGGAAGACGGTGTGCGACCGCAACT
GCGACAAGATTCACATCCTCGCCTCCAACATCGCCTGCTGCGGGGCTGGA
ACCAGCGCCGACGCCGTCAGGATTACGGAGGGGGGGGTGGTCTTGGGTGC
GGATACTCGAGCAACGGGGGGGAAGACGGTGTGCGACCGCAACTGCGACA
AGATTCACATCCTCGCCTCCAACATCGCCTGCTGCGGGGCTGGAACCAGC
GCCGACGCCGTCAGGATTACGGAGGGCGCCCGCCTGGCGCTTTTGCGCAT
GGCCGGGGGGATGCAAGCCTGCCTCCCCTCCCCTAAGTTTTCCCGCACGC
TGCATCGGGCCTCAAACGGCGACAACGACGAAGGCGACGGCGACAGCAAC
AGCAACATCTCGTTCGCCACCCGCGACAGCGGCCTGGACGTGGTGCAGCG
GCAGTACCTTCGGGTCGCGGCAGCGGCGTTTTTGTTGAAACGGCACCTTT
TCCGGTACCAGGGCACGGTCTCCGCGGCCCTCGTGCTGGGAGGGGTTGAC
GCCATCGGGGCACATCTGTATCAGGGCGCCCGCCTGGCGCTTTTGCGCAT
GGCCGGGGGGATGCAAGCCTGCCTCCCCTCCCCTAAGTTTTCCCGCACGC
TGCATCGGGCCTCAAACGGCGACAACGACGAAGGCGACGGCGACAGCAAC
AGCAACATCTCGTTCGCCACCCGCGACAGCGGCCTGGACGTGGTGCAGCG
GCAGTACCTTCGGGTCGCGGCAGCGGCGTTTTTGTTGAAACGGCACCTTT
TCCGGTACCAGGGCACGGTCTCCGCGGCCCTCGTGCTGGGAGGGGTTGAC
GCCATCGGGGCACATCTGTATCAGATTCACGAGGGGGGAAGCTTCGCCGA
GGTGGAGTTCACCGCCATGGGTAGCGGGAGCCTCGCAGCGCTAAGCGTAT
TGGAGATTCACGAGGGGGGAAGCTTCGCCGAGGTGGAGTTCACCGCCATG
GGTAGCGGGAGCCTCGCAGCGCTAAGCGTATTGGAGCGGGGCCACCGCGA
TGAGCTGACCGAAGCGGAAGCGAAGGAGCTCGTCCTGCAAGCGATCGCCG
CGGGAATAGACAACGACTTGGGCAGCGGGAGCAACATCGACGTGTGCGTC
ATCACCGCCGACAGGGGCCTGGAGCACCACAGGGGGGCTTGGAAAGACCC
AGGTGTCGGCAGCGGCGGCGGCGATGCTGCTGCTGGTCGACAGCTCGCTC
AAGCGGGGCCACCGCGATGAGCTGACCGAAGCGGAAGCGAAGGAGCTCGT
CCTGCAAGCGATCGCCGCGGGAATAGACAACGACTTGGGCAGCGGGAGCA
ACATCGACGTGTGCGTCATCACCGCCGACAGGGGCCTGGAGCACCACAGG
GGGGCTTGGAAAGACCCAGGTGTCGGCAGCGGCGGCGGCGATGCTGCTGC
TGGTCGACAGCTCGCTCAAGAATTGGACGCTGAACAGCAGCAGCAGCAGC
AGCAGCAGCAGGGCCAGCTCCCGGACGCGAGTGTCGACATGAGGATGGAG
GTTGGCGGGGAAGGCGGGTCGCGGGCGTGGGTGGCGAAGGGAAACGTGCG
GCGAAGGACGAGAGGGAAGAGCGTGACGAAGGTGGACCATGACGGCGACG
ACGGAGTTGTGCGGAGCTTCCGGAGTGGCGCGCTCGACGACAAGGTCGAA
TTGCTGTGAAATTGGACGCTGAACAGCAGCAGCAGCAGCAGCAGCAGCAG
GGCCAGCTCCCGGACGCGAGTGTCGACATGAGGATGGAGGTTGGCGGGGA
AGGCGGGTCGCGGGCGTGGGTGGCGAAGGGAAACGTGCGGCGAAGGACGA
GAGGGAAGAGCGTGACGAAGGTGGACCATGACGGCGACGACGGAGTTGTG
CGGAGCTTCCGGAGTGGCGCGCTCGACGACAAGGTCGAATTGCTGTGA
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