mRNA_L-elsbetiae_contig617.14747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE) HSP 1 Score: 465 bits (1196), Expect = 4.180e-160 Identity = 277/418 (66.27%), Postives = 308/418 (73.68%), Query Frame = 1 Query: 22 MSWCLVIAFLLGTPIVVPCDA---VVYGGSARPSYGMRSYEDSGAIRDSAAPATAYDGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQ---IHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQELDAEXXXXXXXXXGQLPDASVDMR-----MEVGGEGGSRAWVAKGNVRRRTRGKSVTKVDHDGDDGVVRSFRSGALDDKVELL 1242 MSWCL+I LLG P + PC V Y G A P+ G +G + A + +GGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMA MQACLPS + S L S D + A+ DSGLD VQR++LRV AAA LL+RHLFRYQGTVSAALVLGGVD IG H+YQ IHEGGS AEVEFTAMGSGSLAALSVLERG+R+ +TE EAKELVL+ IAAGIDNDLGSGSNID+CVITA+RGLEHHRGAW DPG+ D A R+L + +++ QL DAS D + VGGEGGS AWV GNVRRR R KSV KVDHD DDG +R +R ALDDK+E+L Sbjct: 1 MSWCLLIVLLLGAPFLPPCGGSLHVFYSG-ATPT-GSAEGATAGLL---GASDRSMEGGAEALRRFASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSR-SPLLQSQSRADGER---------PLASCDSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDD---DGIAARELPEGIES-------WQPNQL-DASDDTESGGFDVIVGGEGGSGAWV--GNVRRRNREKSVMKVDHD-DDGALRRYRCSALDDKIEVL 389
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI) HSP 1 Score: 371 bits (952), Expect = 4.240e-124 Identity = 202/260 (77.69%), Postives = 217/260 (83.46%), Query Frame = 1 Query: 226 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQ 1005 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMA MQACLPS + S L S D + + A+ DSGLD VQR++LRV AAA LLKRHLFRYQGTVSAALVLGGVD IG H+YQIHEGGS AEVEFTAMGSGSLAALSVLERG+R+ LTE EAKELVL+ IAAGIDNDLGSGSNID+CVITA+RGLEHHRGAW DPG+ D A R+L + Sbjct: 1 MKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSR-SPLLQCQSRADEER---------ALASCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDD---DDIAARELPE 247
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.760e-70 Identity = 132/199 (66.33%), Postives = 148/199 (74.37%), Query Frame = 1 Query: 547 FATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQ---IHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGVGSGGGDAAAGRQLAQELDAEXXXXXXXXXGQLPDASVDMRME-----VGGEGGSRAWV 1119 A+ DSGLD VQR++LRV AAA LLKRHLF+YQGTVSAA VLGGVD IG H+YQ IHEGGS AEVEFTAMGSGSLAALSVLERG+R+ LTE E KELVL+ IAAGIDNDLGSGSNID+CVITA+ GLEHHRGAW DPG+ D A R+L + ++ QL DAS D + VGGEGGS AWV Sbjct: 77 LASCDSGLDEVQRKHLRVGAAALLLKRHLFQYQGTVSAAFVLGGVDVIGEHIYQAPLIHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQETKELVLEGIAAGIDNDLGSGSNIDLCVITAEGGLEHHRGAWTDPGLDD---DGIAARELPEGIER-------LEPNQL-DASGDSERDGFDVVVGGEGGSGAWV 264
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S3G0S4_9EUKA (Proteasome subunit beta n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G0S4_9EUKA) HSP 1 Score: 198 bits (503), Expect = 3.200e-57 Identity = 122/244 (50.00%), Postives = 149/244 (61.07%), Query Frame = 1 Query: 211 ASTRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHR 936 A +AMKTGTTI GVVF+GGVVLGADTRATGG V D NC+KIH ++ NI CCGAGT+AD +T ++L LLR+A G + +RVAAAA L ++L+RYQG VSAALVLGGVD G LY IH GS V F MGSGSLAA++V+E G++D+LT EAK LV AI AGI NDLGSGSN+D+ +IT+D G+E+ R Sbjct: 31 AKPKAMKTGTTICGVVFDGGVVLGADTRATGGSVVMDPNCEKIHFISKNIYCCGAGTAADTENVTGMMSSQLELLRLATGRE-----------------------------------------------IRVAAAATSLAQYLWRYQGHVSAALVLGGVDFTGPSLYSIHPHGSVDFVPFITMGSGSLAAMAVMESGYKDKLTREEAKMLVHDAILAGIQNDLGSGSNVDLNIITSD-GVEYLR 226
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A812N4R2_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N4R2_9DINO) HSP 1 Score: 196 bits (499), Expect = 1.260e-56 Identity = 120/249 (48.19%), Postives = 145/249 (58.23%), Query Frame = 1 Query: 220 RAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWKDPGV 960 +A+KTGTTI GVVF+GGVVLGADTRAT G V D+NC+KIH LA NI CCGAGT+AD IT+ + L LLR G Q+ RV A LLKR LF+YQG +SAALVLGGVD G HLY ++ GS ++ F +MGSGSLAA+++LE G++D LTE EAK LV +AI AGI NDLGSGSN+D+ +I D E R GV Sbjct: 24 KALKTGTTICGVVFDGGVVLGADTRATEGTVVADKNCEKIHYLAPNIHCCGAGTAADTENITQLTASNLELLRRQMGTQS-----------------------------------------------RVVTAMTLLKRRLFQYQGHISAALVLGGVDCTGPHLYTVYPHGSTDKLPFVSMGSGSLAAMAMLESGYKDGLTEDEAKALVARAIRAGIFNDLGSGSNVDLTIIRTDGATEQLRSYESQNGV 225
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: W7TKR2_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKR2_9STRA) HSP 1 Score: 195 bits (496), Expect = 5.610e-56 Identity = 120/230 (52.17%), Postives = 143/230 (62.17%), Query Frame = 1 Query: 223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVI 906 AMKTGTTIAGV F+ GVVLGADTRATGG V D+NC+KIH LA NI CCGAGT+AD + TE ++L LLR++ G SP RV A +LKR LFRYQG VSAALVLGGVD+ GAHLYQI+ GS + + MGSGSLAA+SV E G ++++TEAEA ELV +AI AGI NDLGSGSN+D+ +I Sbjct: 43 AMKTGTTIAGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISSQLDLLRLSTG------SPS-----------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIELVKEAILAGIYNDLGSGSNVDLTII 225
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S2UAG4_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAG4_9STRA) HSP 1 Score: 195 bits (496), Expect = 5.610e-56 Identity = 117/242 (48.35%), Postives = 144/242 (59.50%), Query Frame = 1 Query: 223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGA 942 A KTGTTI G+ ++GGVVLGADTRATGG V D++C+KIH LA NI CCGAGT+AD + TE +++ LLRM G+ + RV A LLKR LF+YQG VSAALVLGG DA G H+YQI+ GS + +T MGSGSLAA+SV E G +D + EA+A ELV ++I AGI NDLGSGSN D+CVI D ++ RGA Sbjct: 43 ATKTGTTIVGLTYKGGVVLGADTRATGGTEVADKDCEKIHYLAPNIYCCGAGTAADTEKTTELISSQMELLRMNTGVSS-----------------------------------------------RVVTACTLLKRMLFKYQGHVSAALVLGGCDATGPHVYQIYPHGSTGRLPYTTMGSGSLAAMSVFETGWQDNMEEADAVELVKRSILAGIFNDLGSGSNCDICVIRTDGSVQMDRGA 237
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: C1EBX1_MICCC (Proteasome subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBX1_MICCC) HSP 1 Score: 194 bits (494), Expect = 1.400e-55 Identity = 113/232 (48.71%), Postives = 142/232 (61.21%), Query Frame = 1 Query: 223 AMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADR 918 AMKTGTTI GV F+GGVVLGADTR+T G+TV D+NC+KIH +A NI CCGAGT+AD +T GM A + LHR + ++ RV A +LK HLF+YQG V AALVLGGVD G HL+ +H GS + F MGSGSLAA++V E ++++TE EAKE+V ++I AGI NDLGSGSN+D+CVITAD+ Sbjct: 44 AMKTGTTITGVCFKGGVVLGADTRSTNGETVADKNCEKIHYIAPNIYCCGAGTAADTEAVT------------GMIAS------ALELHR---------------------------LATKRKSRVVTALTMLKSHLFKYQGHVGAALVLGGVDINGPHLFSVHPHGSSDSLPFATMGSGSLAAMAVFEADFKEDMTEEEAKEIVARSIRAGIFNDLGSGSNVDLCVITADK 230
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.690e-55 Identity = 118/245 (48.16%), Postives = 145/245 (59.18%), Query Frame = 1 Query: 220 RAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITADRGLEHHRGAWK 948 RA TGTTI G V++ G+VLGADTRATGG VCD+NC+KIH LA NI CCGAGT+AD + TE ++L LLR++ G Q+ RV A +LKR LFRYQG VSAALVLGGVDA G HLY I+ GS ++ + MGSGSLAA+SV E G+++++TE EA +LV +AI AGI NDLGSGSN D+ VI + HRG K Sbjct: 53 RAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS-----------------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGSSDKLPYVTMGSGSLAAMSVFETGYKEDMTEEEATDLVKEAILAGIFNDLGSGSNCDITVIRKGE-VSRHRGYVK 249
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Match: A0A7S1U940_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U940_9STRA) HSP 1 Score: 194 bits (492), Expect = 3.200e-55 Identity = 119/253 (47.04%), Postives = 150/253 (59.29%), Query Frame = 1 Query: 217 TRAMKTGTTIAGVVFEGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRM-AGGMQACLPSPKFSRTLHRASNGDNDEGDGDSNSNISFATRDSGLDVVQRQYLRVAAAAFLLKRHLFRYQGTVSAALVLGGVDAIGAHLYQIHEGGSFAEVEFTAMGSGSLAALSVLERGHRDELTEAEAKELVLQAIAAGIDNDLGSGSNIDVCVITAD------RGLEHHRGAWK 948 T A KTGTTI GV F+ GVVLGADTRATGG +CD+NC+KIH +A NI CCGAGT+AD + TE ++L L R+ AGG+++ R A LLKR LFRYQG +SAALVLGGVDA+G HLY ++ GS +++ + +MGSGSLAA+SVLE +++++ EAEA +V AI AGI NDLGSGSN+DV VI D R +E RG K Sbjct: 50 TSAKKTGTTICGVTFKNGVVLGADTRATGGSEICDKNCEKIHYIAPNIFCCGAGTAADTEKTTEMIASQLELARLNAGGVES-----------------------------------------------RTVTACTLLKRMLFRYQGHISAALVLGGVDAMGVHLYDVYPHGSTSKLPYVSMGSGSLAAMSVLEMKYKEDMEEAEAIAVVKDAIMAGIMNDLGSGSNVDVTVIRKDKLPSGERSVEQFRGLEK 255 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig617.14747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig617.14747.1 >prot_L-elsbetiae_contig617.14747.1 ID=prot_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=408bp MSWCLVIAFLLGTPIVVPCDAVVYGGSARPSYGMRSYEDSGAIRDSAAPAback to top mRNA from alignment at L-elsbetiae_contig617:1491..5291+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig617.14747.1 ID=mRNA_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3801bp|location=Sequence derived from alignment at L-elsbetiae_contig617:1491..5291+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig617:1491..5291+ >mRNA_L-elsbetiae_contig617.14747.1 ID=mRNA_L-elsbetiae_contig617.14747.1|Name=mRNA_L-elsbetiae_contig617.14747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2448bp|location=Sequence derived from alignment at L-elsbetiae_contig617:1491..5291+ (Laminarionema elsbetiae ELsaHSoW15)back to top |