mRNA_L-elsbetiae_contig6166.14741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6166.14741.1
Unique NamemRNA_L-elsbetiae_contig6166.14741.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6166.14741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6166contigL-elsbetiae_contig6166:9770..10226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6166.14741.1prot_L-elsbetiae_contig6166.14741.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6166 9820..10152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.1093092-UTR-L-elsbetiae_contig6166:9769..98191622816675.1093092-UTR-L-elsbetiae_contig6166:9769..9819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6166 9770..9819 +
1691683731.0659852-UTR-L-elsbetiae_contig6166:9769..98191691683731.0659852-UTR-L-elsbetiae_contig6166:9769..9819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6166 9770..9819 +
1622816675.1315122-UTR-L-elsbetiae_contig6166:10152..102261622816675.1315122-UTR-L-elsbetiae_contig6166:10152..10226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6166 10153..10226 +
1691683731.0903192-UTR-L-elsbetiae_contig6166:10152..102261691683731.0903192-UTR-L-elsbetiae_contig6166:10152..10226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6166 10153..10226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.1210275-CDS-L-elsbetiae_contig6166:9819..101521622816675.1210275-CDS-L-elsbetiae_contig6166:9819..10152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6166 9820..10152 +
1691683731.0778422-CDS-L-elsbetiae_contig6166:9819..101521691683731.0778422-CDS-L-elsbetiae_contig6166:9819..10152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6166 9820..10152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6166.14741.1

>prot_L-elsbetiae_contig6166.14741.1 ID=prot_L-elsbetiae_contig6166.14741.1|Name=mRNA_L-elsbetiae_contig6166.14741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MGATPWRPFQATDTNGAAAAAGSRSGSFYSLARFISRCVRSGQHCLSVCL
SMLSLPGTSTITLCNRVRVSRGTFPHWYGLLCSAKESHTWSIRQRNTPTM
YPLPTLMSRP*
back to top

mRNA from alignment at L-elsbetiae_contig6166:9770..10226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6166.14741.1 ID=mRNA_L-elsbetiae_contig6166.14741.1|Name=mRNA_L-elsbetiae_contig6166.14741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=457bp|location=Sequence derived from alignment at L-elsbetiae_contig6166:9770..10226+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCCAACAAGTTAGGGGGCGCAAGCGTGGGGCAGACCCTACACATCAGG
ATGGGAGCAACGCCGTGGCGACCATTCCAAGCCACGGACACAAACGGGGC
AGCAGCAGCAGCAGGCTCGCGCAGCGGTAGCTTCTACAGCCTTGCGCGCT
TCATTTCTCGGTGCGTTAGGTCCGGCCAGCACTGCCTGTCTGTCTGTCTG
TCCATGCTCTCTTTGCCGGGGACTTCAACTATTACTCTTTGCAACCGAGT
CCGCGTCTCAAGAGGGACGTTTCCTCATTGGTACGGGCTTCTCTGTTCCG
CAAAAGAATCACACACTTGGAGCATCCGGCAAAGAAATACTCCTACTATG
TATCCCCTTCCAACACTGATGTCACGGCCTTGATAATTTCAGAAAATTGT
TCCTTTTTCAGCGTTCACGCAGATACGCGGACACATTTCCTACTGAACAG
CCCAGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6166:9770..10226+

>mRNA_L-elsbetiae_contig6166.14741.1 ID=mRNA_L-elsbetiae_contig6166.14741.1|Name=mRNA_L-elsbetiae_contig6166.14741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig6166:9770..10226+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGCAACGCCGTGGCGACCATTCCAAGCCACGGACACAAACGGGGC
AGCAGCAGCAGCAGGCTCGCGCAGCGGTAGCTTCTACAGCCTTGCGCGCT
TCATTTCTCGGTGCGTTAGGTCCGGCCAGCACTGCCTGTCTGTCTGTCTG
TCCATGCTCTCTTTGCCGGGGACTTCAACTATTACTCTTTGCAACCGAGT
CCGCGTCTCAAGAGGGACGTTTCCTCATTGGTACGGGCTTCTCTGTTCCG
CAAAAGAATCACACACTTGGAGCATCCGGCAAAGAAATACTCCTACTATG
TATCCCCTTCCAACACTGATGTCACGGCCTTGAATGGGAGCAACGCCGTG
GCGACCATTCCAAGCCACGGACACAAACGGGGCAGCAGCAGCAGCAGGCT
CGCGCAGCGGTAGCTTCTACAGCCTTGCGCGCTTCATTTCTCGGTGCGTT
AGGTCCGGCCAGCACTGCCTGTCTGTCTGTCTGTCCATGCTCTCTTTGCC
GGGGACTTCAACTATTACTCTTTGCAACCGAGTCCGCGTCTCAAGAGGGA
CGTTTCCTCATTGGTACGGGCTTCTCTGTTCCGCAAAAGAATCACACACT
TGGAGCATCCGGCAAAGAAATACTCCTACTATGTATCCCCTTCCAACACT
GATGTCACGGCCTTGA
back to top