mRNA_L-elsbetiae_contig6165.14739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6165.14739.1
Unique NamemRNA_L-elsbetiae_contig6165.14739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6165.14739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6165contigL-elsbetiae_contig6165:6903..8226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size546
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.8775423-CDS-L-elsbetiae_contig6165:6902..70841622816674.8775423-CDS-L-elsbetiae_contig6165:6902..7084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6165 6903..7084 +
1691683730.925228-CDS-L-elsbetiae_contig6165:6902..70841691683730.925228-CDS-L-elsbetiae_contig6165:6902..7084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6165 6903..7084 +
1622816674.8880482-CDS-L-elsbetiae_contig6165:7864..82251622816674.8880482-CDS-L-elsbetiae_contig6165:7864..8225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6165 7865..8225 +
1691683730.9374864-CDS-L-elsbetiae_contig6165:7864..82251691683730.9374864-CDS-L-elsbetiae_contig6165:7864..8225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6165 7865..8225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6165.14739.1prot_L-elsbetiae_contig6165.14739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6165 6903..8225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6165.14739.1

>prot_L-elsbetiae_contig6165.14739.1 ID=prot_L-elsbetiae_contig6165.14739.1|Name=mRNA_L-elsbetiae_contig6165.14739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
WLCPSAEAGGGEYGQRATAVAAPVGRAPSRMQLCTRSPIFAQAQGKVAAA
VRRDLSYASSRHGHGSLRERARPLLVSKEKGPQECPEPRQRQLQPRSARQ
LSRPEEGKGEMCIAAAAVAAGPDISCKNAWSRLAMPGSISSSGNSCEGLH
RVRDVDGAGRRHTDCGIGIGVHSATATRGGK
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mRNA from alignment at L-elsbetiae_contig6165:6903..8226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6165.14739.1 ID=mRNA_L-elsbetiae_contig6165.14739.1|Name=mRNA_L-elsbetiae_contig6165.14739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1324bp|location=Sequence derived from alignment at L-elsbetiae_contig6165:6903..8226+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCTGCCCCTCTGCCGAGGCAGGGGGGGGCGAGTACGGGCAAAGAGC
GACTGCTGTAGCGGCTCCAGTTGGCCGGGCGCCATCAAGAATGCAGCTAT
GTACTCGCAGTCCAATTTTTGCACAAGCACAGGGGAAAGTGGCAGCTGCT
GTACGTCGAGATCTGTCATACGCATCTTCCAGGTGCGTGAAAGCAGGCAG
GCATGACCCGCTTGTCAATGCATCGCAAGGGGGAGAGAGAACTCCGTCGA
GCAAGTGTGCGTTGTTCGAATGCCGCCTTGTTGCGGTCTCTGCGTTGCTT
TGTTTTCGAGCGTACTTGTCAATACATTGACGCCTGCACATCTGTGTGCG
GCGAGGTCCCCTCAGTTGCAACAACGTTCGGGTTTCAAGCCGGGTTGGTT
GTGAAGGACAGATTGTGCACACGATGATGCACTTGTTCCGATCGTGAAGG
CTACATTTTGCTTCTCTTGGGCGAAGGACTCCTGCCTCCTCCTTCCCTCT
CTGGAGCGTGTTGGTTCGTCTTTGCAGTATGGGGAAAAGGCGGCCCAAAA
AAGCCCGTTTTGTACGCACCGAGCATAGCCATGTGCCTACCTCCAACGCT
CGACGTTCCGGCATGATCAAAGCAGATGTTTTCTGCGCAGTGAGTAACGC
ACGCACCGGTTGATGTTTTTATTTGTTGAGCGGGTGTTTATTTCGCTCAC
CCCACGCTGTGTCGGTTGTTGATGGCCGAGTTCTCCAAGCGTTGTATTGC
GTCCGACAACAACACACCAAAACCCTCGGTGAGGAGTTAGCCTTACAGGC
AGGGGACAGGGTTGTCTTGGTTGTATGTACGATATAAGTGTTCATGATAA
CAGCGGTAAGTGATATGTGTTCACACATTGTCACCCCCGAACATCTTTGA
TCCTAGGTTGATGGTTGATTCTTGTGTTTGGTGGCGGATCGATTCCATTC
CGCTCACGAAAGGCATGGGCATGGCAGCCTTCGCGAGAGGGCGCGTCCGC
TGTTGGTGTCCAAGGAGAAGGGCCCACAAGAGTGCCCCGAGCCTCGCCAA
CGACAGTTGCAACCCCGAAGTGCACGACAGCTATCCAGACCAGAAGAGGG
CAAGGGGGAAATGTGCATCGCCGCGGCGGCGGTAGCAGCTGGGCCAGATA
TTAGCTGCAAGAATGCATGGTCGCGGCTAGCTATGCCCGGCAGCATCAGC
AGCAGCGGTAACAGTTGCGAAGGCTTGCACCGAGTGAGAGATGTTGATGG
CGCTGGACGAAGGCACACGGATTGTGGTATTGGTATTGGTGTGCATTCAG
CGACGGCGACTCGTGGAGGGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6165:6903..8226+

>mRNA_L-elsbetiae_contig6165.14739.1 ID=mRNA_L-elsbetiae_contig6165.14739.1|Name=mRNA_L-elsbetiae_contig6165.14739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig6165:6903..8226+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCTGCCCCTCTGCCGAGGCAGGGGGGGGCGAGTACGGGCAAAGAGC
GACTGCTGTAGCGGCTCCAGTTGGCCGGGCGCCATCAAGAATGCAGCTAT
GTACTCGCAGTCCAATTTTTGCACAAGCACAGGGGAAAGTGGCAGCTGCT
GTACGTCGAGATCTGTCATACGCATCTTCCAGTGGCTCTGCCCCTCTGCC
GAGGCAGGGGGGGGCGAGTACGGGCAAAGAGCGACTGCTGTAGCGGCTCC
AGTTGGCCGGGCGCCATCAAGAATGCAGCTATGTACTCGCAGTCCAATTT
TTGCACAAGCACAGGGGAAAGTGGCAGCTGCTGTACGTCGAGATCTGTCA
TACGCATCTTCCAGGCATGGGCATGGCAGCCTTCGCGAGAGGGCGCGTCC
GCTGTTGGTGTCCAAGGAGAAGGGCCCACAAGAGTGCCCCGAGCCTCGCC
AACGACAGTTGCAACCCCGAAGTGCACGACAGCTATCCAGACCAGAAGAG
GGCAAGGGGGAAATGTGCATCGCCGCGGCGGCGGTAGCAGCTGGGCCAGA
TATTAGCTGCAAGAATGCATGGTCGCGGCTAGCTATGCCCGGCAGCATCA
GCAGCAGCGGTAACAGTTGCGAAGGCTTGCACCGAGTGAGAGATGTTGAT
GGCGCTGGACGAAGGCACACGGATTGTGGTATTGGTATTGGTGTGCATTC
AGCGACGGCGACTCGTGGAGGGAAAGCATGGGCATGGCAGCCTTCGCGAG
AGGGCGCGTCCGCTGTTGGTGTCCAAGGAGAAGGGCCCACAAGAGTGCCC
CGAGCCTCGCCAACGACAGTTGCAACCCCGAAGTGCACGACAGCTATCCA
GACCAGAAGAGGGCAAGGGGGAAATGTGCATCGCCGCGGCGGCGGTAGCA
GCTGGGCCAGATATTAGCTGCAAGAATGCATGGTCGCGGCTAGCTATGCC
CGGCAGCATCAGCAGCAGCGGTAACAGTTGCGAAGGCTTGCACCGAGTGA
GAGATGTTGATGGCGCTGGACGAAGGCACACGGATTGTGGTATTGGTATT
GGTGTGCATTCAGCGACGGCGACTCGTGGAGGGAAA
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