mRNA_L-elsbetiae_contig6163.14735.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6163.14735.1
Unique NamemRNA_L-elsbetiae_contig6163.14735.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.290e-27
Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 3
Query:   27 SMPRSEHNGPGRFRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLH 428
            +M R + N    F   + A  RE    LS RR  +D+AWAD+D  W  + +HM+ +GI K     +  V+LN+ GSL+ FRR + E +G+G        L SL +  WD R+PRD+DGRIVLDESPTCVK L H
Sbjct:   64 NMLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGKGA----TSALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFH 193          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.340e-23
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  108 LSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLHT 431
            LS RR E+ +AW D+D  W  ++Q     GI K + +    + LN+ GS +NFRR ++  + E         L +LF++VWDDRLPRD+DGRIVLDESP CVKHL+H+
Sbjct:    5 LSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGRKEPSA---TWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHS 109          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.790e-22
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   30 MPRSEHNGPGRFRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLH 428
            M R + N    F AT+    R  E  LS RR E+D  W  +D  W  + + M+ +GI K   + +  V+LN+ G L+ FRR +++ +G+         L +LF+  WD R+PRD+DG IVLDESPTCVK L+H
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPP--TWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVH 131          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.840e-21
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   30 MPRSEHNGPGRFRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLHT 431
            M R   N    F AT+ A  +E E  L  RR  + +AW D++  W  ++Q     GI K   + +  + LN+ GS + FRR +++ + E         L +LF++VWDDRLPRD+DGRIVLD+SP CVK L+H+
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGKKEPSA---TWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHS 131          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.410e-19
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   63 FRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLHT 431
            FR T +A  ++    L L  + +D+ W DL++ W    Q++  +G V+    ++  + LNI G   N  R L+  + EG  G     L +LF+ +WD+R+PRD DGRIVLDESP CVKH++HT
Sbjct:   12 FRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVG-VRPTTGNEGVLRLNIGGVPANVHRSLI-AEAEGFKG---SVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHT 129          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7FIX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.270e-15
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 3
Query:   63 FRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCT--LASLFDNVWDDRLPRDADGRIVLDESPTCVKHLLH 428
            F ATM A   E E  L+ R                 + + M+ +GI     +     +LN+ GSLV+FRR ++  +  G       T  L +LF+  WD R+P D+DGRIVLDESPTCVKHL+H
Sbjct:   12 FSATMEAFALETEAALAQRWQXXXXXXXXXXXXXXXLRERMTQVGITTPLDSKKGIDKLNVGGSLVSFRRSVLSTEAGGKQQQQPSTWALENLFEAEWDKRVPGDSDGRIVLDESPTCVKHLVH 135          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7FSV1_ECTSI (Potassium channel tetramerisation domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.590e-13
Identity = 46/125 (36.80%), Postives = 62/125 (49.60%), Query Frame = 3
Query:   63 FRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPA---DDHTVELNI-RGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLL 425
            F     A   + E  L L  A+   AW DL+  W   ++H   +GIVK A +   ++   EL    G LV+ RR + E Q              LF   WD+R+PRDA G +VLDESP CV+HL+
Sbjct:   13 FSTVRGAHAEQQEAALRLVEADFRTAWEDLEEGWDHFEKHQIEIGIVKSATSCGEENEYGELECCGGELVHVRRGMFEGQ----------PFGDLFKGAWDERVPRDAAGYVVLDESPACVQHLV 127          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.070e-13
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  129 LDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDN-VWDDRLPRDADGRIVLDESPTCVKHLL 425
            + K W  LDS W  ++  M+  G+   +      V LN+ G  VN  R ++   GE        TL  LF+  VWD RLPR  DGRIVLDESP CV+ LL
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSS--TWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELL 98          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: D7FIU9_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.180e-11
Identity = 40/100 (40.00%), Postives = 50/100 (50.00%), Query Frame = 3
Query:  129 LDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLASLFDN-VWDDRLPRDADGRIVLDESPTCVKHLL 425
            + K W  LDS W  ++  +S  G+   +      V LN+ G  VN  R +    GE        TL  LF+  VWD RLPR  DGRIVLD S  CV+ LL
Sbjct:    1 MKKEWDTLDSGWEALESKISQAGMSMVSSIPPSFVRLNVGGLDVNIARSVFRKTGEASSSS--WTLGDLFEGCVWDKRLPRSEDGRIVLDASAVCVEELL 98          
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Match: A0A6H5JHS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.110e-11
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  114 LRRAELDKAWADLDSRWPGVDQHMSAMGIVKKAPADDHTVELNIRGSLVNFRRP-------LVEVQGEGGGGGGLCTLASLFDNVWDDRLPRDADGRIVLDESPTCVKHLL 425
            L R E  + W      W  ++Q  +  G V+    DD T+ LN+ GS V+  R        L EV            LA+LFD+ WD+RLPRDA+G +VLDESP C KHL+
Sbjct:   22 LERRESHEEWEGFVKGWHKLEQLETEWGRVRSTFVDD-TLTLNVGGSNVDVSRADLHRLPALSEV----------WKLANLFDSDWDERLPRDANGLMVLDESPVCFKHLV 121          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6163.14735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FIY4_ECTSI2.290e-2744.78TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2H5_ECTSI9.340e-2347.22TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LAP0_9PHAE8.790e-2240.60TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE2.840e-2140.30TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G141_ECTSI6.410e-1939.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FIX9_ECTSI5.270e-1538.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSV1_ECTSI1.590e-1336.80Potassium channel tetramerisation domain containin... [more]
D7FIV0_ECTSI5.070e-1342.00TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIU9_ECTSI3.180e-1140.00TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JHS2_9PHAE5.110e-1139.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6163contigL-elsbetiae_contig6163:1861..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.7875571-UTR-L-elsbetiae_contig6163:1860..18891622816674.7875571-UTR-L-elsbetiae_contig6163:1860..1889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6163 1861..1889 +
1691683730.886692-UTR-L-elsbetiae_contig6163:1860..18891691683730.886692-UTR-L-elsbetiae_contig6163:1860..1889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6163 1861..1889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.8031008-CDS-L-elsbetiae_contig6163:1889..22911622816674.8031008-CDS-L-elsbetiae_contig6163:1889..2291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6163 1890..2291 +
1691683730.8986142-CDS-L-elsbetiae_contig6163:1889..22911691683730.8986142-CDS-L-elsbetiae_contig6163:1889..2291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6163 1890..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6163.14735.1prot_L-elsbetiae_contig6163.14735.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6163 1890..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6163.14735.1

>prot_L-elsbetiae_contig6163.14735.1 ID=prot_L-elsbetiae_contig6163.14735.1|Name=mRNA_L-elsbetiae_contig6163.14735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MPRSEHNGPGRFRATMNAGKREAETRLSLRRAELDKAWADLDSRWPGVDQ
HMSAMGIVKKAPADDHTVELNIRGSLVNFRRPLVEVQGEGGGGGGLCTLA
SLFDNVWDDRLPRDADGRIVLDESPTCVKHLLHT
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mRNA from alignment at L-elsbetiae_contig6163:1861..2291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6163.14735.1 ID=mRNA_L-elsbetiae_contig6163.14735.1|Name=mRNA_L-elsbetiae_contig6163.14735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=431bp|location=Sequence derived from alignment at L-elsbetiae_contig6163:1861..2291+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACCCGGGCGAACACCGAACGAAGAGCATGCCTCGCTCCGAGCACAAC GGGCCGGGGCGGTTCAGGGCCACGATGAACGCGGGCAAGCGAGAAGCCGA GACACGCCTGAGCCTCCGGCGCGCCGAGCTGGACAAGGCCTGGGCGGACC TCGACAGCCGGTGGCCGGGCGTCGACCAGCACATGAGCGCGATGGGGATA GTCAAGAAGGCGCCGGCCGACGACCACACGGTGGAACTCAACATACGCGG GTCGCTCGTGAACTTCCGGCGCCCCCTGGTCGAGGTGCAGGGGGAGGGCG GCGGCGGCGGCGGCCTGTGCACCCTGGCTAGCCTGTTCGACAACGTGTGG GACGACCGGCTGCCCCGGGACGCCGACGGCCGCATCGTGCTCGACGAGTC GCCCACCTGCGTCAAGCACCTGCTGCACACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6163:1861..2291+

>mRNA_L-elsbetiae_contig6163.14735.1 ID=mRNA_L-elsbetiae_contig6163.14735.1|Name=mRNA_L-elsbetiae_contig6163.14735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig6163:1861..2291+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGCTCCGAGCACAACGGGCCGGGGCGGTTCAGGGCCACGATGAA
CGCGGGCAAGCGAGAAGCCGAGACACGCCTGAGCCTCCGGCGCGCCGAGC
TGGACAAGGCCTGGGCGGACCTCGACAGCCGGTGGCCGGGCGTCGACCAG
CACATGAGCGCGATGGGGATAGTCAAGAAGGCGCCGGCCGACGACCACAC
GGTGGAACTCAACATACGCGGGTCGCTCGTGAACTTCCGGCGCCCCCTGG
TCGAGGTGCAGGGGGAGGGCGGCGGCGGCGGCGGCCTGTGCACCCTGGCT
AGCCTGTTCGACAACGTGTGGGACGACCGGCTGCCCCGGGACGCCGACGG
CCGCATCGTGCTCGACGAGTCGCCCACCTGCGTCAAGCACCTGCTGCACA
CGATGCCTCGCTCCGAGCACAACGGGCCGGGGCGGTTCAGGGCCACGATG
AACGCGGGCAAGCGAGAAGCCGAGACACGCCTGAGCCTCCGGCGCGCCGA
GCTGGACAAGGCCTGGGCGGACCTCGACAGCCGGTGGCCGGGCGTCGACC
AGCACATGAGCGCGATGGGGATAGTCAAGAAGGCGCCGGCCGACGACCAC
ACGGTGGAACTCAACATACGCGGGTCGCTCGTGAACTTCCGGCGCCCCCT
GGTCGAGGTGCAGGGGGAGGGCGGCGGCGGCGGCGGCCTGTGCACCCTGG
CTAGCCTGTTCGACAACGTGTGGGACGACCGGCTGCCCCGGGACGCCGAC
GGCCGCATCGTGCTCGACGAGTCGCCCACCTGCGTCAAGCACCTGCTGCA
CACG
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