mRNA_L-elsbetiae_contig6155.14727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6155.14727.1
Unique NamemRNA_L-elsbetiae_contig6155.14727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 5.200e-111
Identity = 180/214 (84.11%), Postives = 187/214 (87.38%), Query Frame = 1 
Query:  364 RRQGRFGPQEKVGGAGAXXXXXXXXXXXXXXXXXXGMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDEEK 1005
            +R GRFGPQ K GGAG                   GMNFAERMMAKMGH +GQGLGAS+QGISQPLQSMSAGGGMGVIDMH +DKKRMGGPSDTPAP  ARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLI+EIKGG+TPDT+RVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQ DEEK
Sbjct:  280 QRGGRFGPQAKAGGAGIGGGSAAES----------GMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPA-ARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIKGGDTPDTERVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQADEEK 482
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.850e-84
Identity = 149/192 (77.60%), Postives = 158/192 (82.29%), Query Frame = 1 
Query:  364 RRQGRFGPQEKVGGAGAXXXXXXXXXXXXXXXXXXGMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIA 939
            +R GRFGPQ K GGAG                   GMNFAERMMAKMGH +GQGLGAS+QGISQPLQSMSAGGGMGVIDMH +DKKRMGGPSDTPA P ARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLI+EIKGG+TPDT+RVRIFVAFEKQESAVK  L+  GR  GG+  A
Sbjct:  265 QRGGRFGPQAKAGGAGVGGGSAAES----------GMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAAP-ARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIKGGDTPDTERVRIFVAFEKQESAVKGLLDELGR--GGKMGA 443
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A6U3SBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SBK6_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.780e-52
Identity = 100/180 (55.56%), Postives = 120/180 (66.67%), Query Frame = 1 
Query:  469 GMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAP-PPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDEEK 1005
            G N A  MM  MG T G+GLG   QGIS+PL++   GGG G +    A   +    S  P P P A+KKR LF NPT VLLLKNMVGPGEVD ELE E   EC +FGPVR C+++E+KG   P  Q VR FVAFEKQESA+KA+L+M GRFF GRQI  +F+ E +F   DL PQ D+E+
Sbjct:   27 GGNLAMNMMKGMGWTDGEGLGREGQGISRPLEARPTGGGQGAVANPGARGNQKLSTSMLPPPGPAAKKKRALFRNPTTVLLLKNMVGPGEVDSELEKEVQEECSKFGPVRTCVVYELKGA--PPDQAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIRCAFFNETRFRNRDLVPQGDDEE 204
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: W7TGN1_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGN1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.730e-50
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 1 
Query:  493 MAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVID-MHQADKKRMGGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDE 999
            M K+G+ +G GLG  +QGI++ +++ + GGG GVI    Q  K                 KRGLFSNPT+++LLKNMVGPGEVDD+L+GET+ EC + GPV  CL+FE+     P+ +RVR FVAFE+QESAVKAY+ MNGRFFGGRQ+ ASF+ E+KF   DL P  +E
Sbjct:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQXXXXXXXXKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEE 170
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A835ZCV1_9STRA (Putative DNA-damage repair protein drt111 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV1_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.080e-48
Identity = 99/174 (56.90%), Postives = 121/174 (69.54%), Query Frame = 1 
Query:  469 GMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARK-KRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEP 987
            GM  A+ +MAKMG  +G+GLG S QGISQP+ + S G GMG + MH AD+KR    +           KRGLFSNPT VLLLKNMVG GEVD +LEGE   EC ++GPVR+CL+ E  G   P  + V  FVAFE+QESA+KAYL+MNGRFFGGRQI A+FY+E KF+  +  P
Sbjct:  242 GMALAQSLMAKMGWQEGKGLGKSGQGISQPIVAQSTGVGMGTVAMHPADRKRPAQAAXXXXXXXXXSAKRGLFSNPTCVLLLKNMVGAGEVDSDLEGEVKEECMKYGPVRQCLVREHAG--LPADETVWTFVAFERQESAIKAYLDMNGRFFGGRQIGAAFYEEAKFERGEYGP 413
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A7S2W0J2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0J2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.590e-42
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:  631 GPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDEE 1002
            GP   P   P +KKR LF NP+ VLLLKNMVGPGEVD++L+ E + EC +FGPVR+C+++E K    P+ + VR FVAFEKQESA+KA+L+M GRFF GRQI  +F+KED+F + D  P P+EE
Sbjct:   60 GPGMVPPQGPPKKKRALFRNPSSVLLLKNMVGPGEVDEDLQNEVAEECSKFGPVRQCVVYEHKAPGVPEHEAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIHCAFFKEDRFKSGDFAPSPEEE 183
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A077W9K9_9FUNG (G-patch domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W9K9_9FUNG)

HSP 1 Score: 163 bits (413), Expect = 1.200e-40
Identity = 86/173 (49.71%), Postives = 116/173 (67.05%), Query Frame = 1 
Query:  481 AERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDE 999
            A ++MAK G  +GQGLG  + G+ + LQ  + G G GVI     +K ++   S +P+PPPA +     S P+ V+LL NMVGPGEVDD L+ ET+ EC ++G V RCLIFE+ GG+ P+ Q VRIFV F + ESAV A  ++NGRFFGGR + A F+  ++FD LDL P P+E
Sbjct:  271 ARKVMAKYGWQEGQGLGRDEDGLREALQVQATGRGSGVI----VNKSQIS--SVSPSPPPASRT----STPSPVVLLTNMVGPGEVDDMLQEETADECGKYGQVERCLIFEVPGGQVPEDQAVRIFVKFTRVESAVAALNDLNGRFFGGRVVTARFFDNNRFDRLDLAPGPNE 433
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A5J4XMS3_9CHLO (Splicing factor 45 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XMS3_9CHLO)

HSP 1 Score: 161 bits (408), Expect = 2.750e-40
Identity = 85/179 (47.49%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  469 GMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRG--LFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDE 999
            GM+ A +MM KMG   G GLG +KQGI  PL         G I    A + +        A PPA+K +G  +   PTRV+LL+NMVGPGEVD +LE E + EC ++G V+  +IFE+     PD Q VRIFV FE+ E A K+ +++ GRFFGGR ++A+F+ EDKFD  DL PQP E
Sbjct:  222 GMDLAAKMMEKMGWKSGLGLGRNKQGIVNPLMVQKTDKRGGTIVSSPAAQAQA-----AEAAPPAKKPKGGVILGTPTRVVLLRNMVGPGEVDPDLEDEVANECSKYGQVQSVMIFEVTTAGYPDDQAVRIFVEFERMEQATKSVIDLGGRFFGGRTVSATFFDEDKFDKQDLGPQPGE 395
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A2G9GQP0_9LAMI (mRNA splicing factor n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GQP0_9LAMI)

HSP 1 Score: 158 bits (400), Expect = 2.560e-39
Identity = 86/176 (48.86%), Postives = 106/176 (60.23%), Query Frame = 1 
Query:  472 MNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDE 999
            M  A+RMMA+MG  QGQGLG  +QGI+ PL +       GVI       K++             K       PTRV+LL+NMVGPGEVDD+LEGE + EC +FG V R LIFEI     P  + VRIFV FE+ E A KA +E+ GRFFGGR + ASFY ED+F+  +L P P E
Sbjct:  215 MTAAQRMMARMGWKQGQGLGKQEQGITTPLMAKKTDKRGGVIVNASESSKKV-------------KSVNFNGTPTRVVLLRNMVGPGEVDDDLEGEVAEECAKFGTVTRVLIFEITEANFPHDEAVRIFVQFERAEQATKALIELEGRFFGGRVVHASFYDEDRFNNNELAPLPGE 377
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BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Match: A0A397U5A2_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U5A2_9GLOM)

HSP 1 Score: 155 bits (393), Expect = 3.750e-39
Identity = 84/181 (46.41%), Postives = 114/181 (62.98%), Query Frame = 1 
Query:  469 GMNFAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRMGGPSDTPAPPPARKKRGLFSN---PTRVLLLKNMVGPGEVDDELEGETSGEC-ERFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGGRQIAASFYKEDKFDALDLEPQPDE 999
            G +FA R++AK G  +GQGLG ++QGI++PL+        G+I     +      P+   + P       + SN   P+RV+LL NMVGPGEVDD L+ ET+ EC E++G V RCLIFE+  G+ PD + VRIFV FE Q +A+KA  ++NGRFFGGR + A F+ E +FD  DL P P E
Sbjct:  119 GEDFAHRILAKYGWQEGQGLGKNEQGINEPLKVQKTDYRSGIIVNTSTNILAKSTPAQVKSDP-------IPSNVEVPSRVILLTNMVGPGEVDDTLQEETADECNEKYGTVERCLIFEVPHGKLPDDKAVRIFVKFETQAAAIKAKKDLNGRFFGGRSVTAKFFDESRFDKYDLAPSPAE 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6155.14727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK36_9PHAE5.200e-11184.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL75_ECTSI1.850e-8477.60DNA-damage repair protein drt111, putative n=1 Tax... [more]
A0A6U3SBK6_9STRA1.780e-5255.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TGN1_9STRA1.730e-5052.94RNA binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A835ZCV1_9STRA1.080e-4856.90Putative DNA-damage repair protein drt111 n=1 Tax=... [more]
A0A7S2W0J2_9STRA7.590e-4258.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A077W9K9_9FUNG1.200e-4049.71G-patch domain-containing protein n=1 Tax=Lichthei... [more]
A0A5J4XMS3_9CHLO2.750e-4047.49Splicing factor 45 n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A2G9GQP0_9LAMI2.560e-3948.86mRNA splicing factor n=1 Tax=Handroanthus impetigi... [more]
A0A397U5A2_9GLOM3.750e-3946.41Uncharacterized protein n=1 Tax=Gigaspora rosea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6155contigL-elsbetiae_contig6155:4890..11289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.8
Seed ortholog evalue5.3e-81
Seed eggNOG ortholog2880.D7FL75
Preferred nameRBM17
KEGG koko:K12840
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001654,GO:0001745,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009653,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048024,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090596,GO:1901360,GO:1903311
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG1996@1,KOG1996@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-19_005230.1
Exons7
Model size1889
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.8953662-UTR-L-elsbetiae_contig6155:4889..57701622816673.8953662-UTR-L-elsbetiae_contig6155:4889..5770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6155 4890..5770 -
1691683730.1736865-UTR-L-elsbetiae_contig6155:4889..57701691683730.1736865-UTR-L-elsbetiae_contig6155:4889..5770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6155 4890..5770 -
1622816674.0070505-UTR-L-elsbetiae_contig6155:11112..112891622816674.0070505-UTR-L-elsbetiae_contig6155:11112..11289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6155 11113..11289 -
1691683730.2740736-UTR-L-elsbetiae_contig6155:11112..112891691683730.2740736-UTR-L-elsbetiae_contig6155:11112..11289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6155 11113..11289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.9085453-CDS-L-elsbetiae_contig6155:5770..58861622816673.9085453-CDS-L-elsbetiae_contig6155:5770..5886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 5771..5886 -
1691683730.1904392-CDS-L-elsbetiae_contig6155:5770..58861691683730.1904392-CDS-L-elsbetiae_contig6155:5770..5886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 5771..5886 -
1622816673.9254153-CDS-L-elsbetiae_contig6155:6401..64741622816673.9254153-CDS-L-elsbetiae_contig6155:6401..6474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 6402..6474 -
1691683730.201009-CDS-L-elsbetiae_contig6155:6401..64741691683730.201009-CDS-L-elsbetiae_contig6155:6401..6474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 6402..6474 -
1622816673.938434-CDS-L-elsbetiae_contig6155:7161..72661622816673.938434-CDS-L-elsbetiae_contig6155:7161..7266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 7162..7266 -
1691683730.2132738-CDS-L-elsbetiae_contig6155:7161..72661691683730.2132738-CDS-L-elsbetiae_contig6155:7161..7266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 7162..7266 -
1622816673.951562-CDS-L-elsbetiae_contig6155:8144..82351622816673.951562-CDS-L-elsbetiae_contig6155:8144..8235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 8145..8235 -
1691683730.2230926-CDS-L-elsbetiae_contig6155:8144..82351691683730.2230926-CDS-L-elsbetiae_contig6155:8144..8235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 8145..8235 -
1622816673.966604-CDS-L-elsbetiae_contig6155:9028..91281622816673.966604-CDS-L-elsbetiae_contig6155:9028..9128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 9029..9128 -
1691683730.2354789-CDS-L-elsbetiae_contig6155:9028..91281691683730.2354789-CDS-L-elsbetiae_contig6155:9028..9128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 9029..9128 -
1622816673.9809783-CDS-L-elsbetiae_contig6155:9611..98431622816673.9809783-CDS-L-elsbetiae_contig6155:9611..9843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 9612..9843 -
1691683730.246587-CDS-L-elsbetiae_contig6155:9611..98431691683730.246587-CDS-L-elsbetiae_contig6155:9611..9843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 9612..9843 -
1622816673.99628-CDS-L-elsbetiae_contig6155:10998..111121622816673.99628-CDS-L-elsbetiae_contig6155:10998..11112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 10999..11112 -
1691683730.2626708-CDS-L-elsbetiae_contig6155:10998..111121691683730.2626708-CDS-L-elsbetiae_contig6155:10998..11112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6155 10999..11112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6155.14727.1prot_L-elsbetiae_contig6155.14727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6155 5771..11112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6155.14727.1

>prot_L-elsbetiae_contig6155.14727.1 ID=prot_L-elsbetiae_contig6155.14727.1|Name=mRNA_L-elsbetiae_contig6155.14727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MAALEATMGRGRGRGLSNLPAWMTKGKGAAPGSPENIPEPPTPGRGPSPA
APGQFDSVPEGGRRQGRFGPQEKVGGAGAGAGGGAGGGAGVGAGAESGMN
FAERMMAKMGHTQGQGLGASKQGISQPLQSMSAGGGMGVIDMHQADKKRM
GGPSDTPAPPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECE
RFGPVRRCLIFEIKGGETPDTQRVRIFVAFEKQESAVKAYLEMNGRFFGG
RQIAASFYKEDKFDALDLEPQPDEEK*
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mRNA from alignment at L-elsbetiae_contig6155:4890..11289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6155.14727.1 ID=mRNA_L-elsbetiae_contig6155.14727.1|Name=mRNA_L-elsbetiae_contig6155.14727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6400bp|location=Sequence derived from alignment at L-elsbetiae_contig6155:4890..11289- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGAAGCGGCAAGACGAAGAGCGAGCAGCTACGATCCGCAAGATCCA
AGAGGCGGCGGCAAAGTCCCACGAGGGGGGCTCCGCTGCAGCGGTGGCGC
AGGGGGGCGGTGGAGTTGGAGGTGGCGCGGCGGGCGTCGGTGGCGCGGGG
CGCGGGCGAGGGGGCCCCGTAGGAGACATGGCCGCCCTAGAGGCGACCAT
GGGGCGCGGGCGAGGTCGCGGGCTGTCGAACCTCCCGGCGTGGATGACTA
AGGGCAAGGGAGCGGCGCCGGGATCTCCGGAGAACATACCGGTGAGGACA
TGAAGACATGCACAAACAGTTTTATTCTCCTCCGTGTGGATAGCGACAAG
TTCTGGGCGTCCGCGTGTGTTTCCCGCTTATATAGGGGAGGAAATATTAA
GTATTACGCTGACACTGCTGAGACTAGTCAGGCTGCTTCACATCGAGGCC
CAACATGTTTTTTTTTGGGGGGGGGGGATCCTCGCGGAAGAGAGCCGTAC
AAGCAAGCACTTTTGCGAGCACAAGGGGCGCCTCTTAGCTGAGTTCTGAA
AAATATACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGAT
TCGATATGGGGTTGAAATGGTATTCCACACAGAGACGTAATATTTGGCGA
AACGAGCAGAAAAACAACCTAAAATGTCAGAAGAGTTCAACATCTCCCCT
GCAAAGATTTAAACGTTTGCGAGGTCGGCCAACAATTATCCAGGCGGGTA
GGGCCCGCCGTGATGCCGTTATGTTGTCGTCTACTTCAAAATAGGAACAC
ATCGCATTGTTTAACTAAATCAAATGCTGGTTTAATATATGTGGGTTACT
GCTTTGGAGGAGAAAATACAATATTAGTGGTAGTGATAAGACAATAGCCA
GGGTTGGGAAGGGTGGTATGTGGCACGATGCGTTGGGAAATAGTGTGGGT
ATGATAACTTCCGTATGACAAAGTTCTTGTCTCGAAAAGAGAAAGGAACA
GAAGAGACGAAAACACCCCAGGAACGTCGGGCATCCGTCGGTACAACGTG
TGTGCACACTGCAAAAAAAAAAAAATCCCACGATGCACCGATCAGCTTCT
TGAGCTACTATAGCTCGTCCGAAAATCGCCCCATCGTGCATGCTCAACCT
TAACCCCTTTGCAACGCCAAGAAATATTTATTTAACTGCAAGGCTGTGAT
TGGATTTTACTCGCACAGTCCCTGATGCAGACTCCTTGTCTATAATCCCT
ATCATTTGGCCCCAAATCGATTTCGGGGCCAAATGATATACCTTTATGGG
GCACCCGTTCTAAACTGGGGTCGAAAAGTTTGTTTTATGACTTGGGGACT
TGGGGCCATAATGTGGCCCCAAATGCTTTGTGGTCCTAAAGGGGTTAACC
TTACCACCGCCCCCTCCCTTCCCCCCGCAAATGTGCTTTTTACCAGGAAC
CCCCCACTCCCGGCAGAGGCCCATCCCCCGCCGCCCCCGGACAGTTCGAC
AGCGTTCCCGAGGGCGGCCGTCGGCAGGGTAGATTTGGGCCGCAGGAGAA
AGTTGGTGGTGCTGGTGCTGGTGCTGGTGGTGGTGCTGGTGGCGGTGCCG
GTGTTGGAGCGGGAGCGGAGAGCGGTATGAACTTTGCGGAGCGCATGATG
GCGAAGATGGGGCACACGCAGGGGCAAGGTGAGGGAAAAGGCTCTCCCTT
ACCCGGCAGGGGGACAGGGAGTGATTCGATCGAGCTAAAGGGACAAGGGG
GCACCGAAGATACATCGAATCAGGCCGCGGGCGGTAGCAGCAGCAGCTGC
TTGTGTGATCCCCGCAAAAGCTTGGGCTGACGTAGACACCATTCTCACCG
AGAGGAAATAATGGCAGTGTCTATCTTATGATGTGTTGCTCTCCTGCGCA
TGAGCCCGACGGTGATGACAGCCCGTGTGCGCGACATGACCCCCCTGTTC
ACCGTCGTCGTTGTTGTGGTCGACTGCGTCTCCCCCAAGGGTGCCCCGCA
CTTGCAACACATCGGGTTTGTAGGCTGGCAGGGAAACAGTCTGCACCTTG
TCAGCGCGTGCAGCACCTGCTGCCCCAGAGTGTTGATGTTGTCCGCCCCC
TGTGTGGCGGCGTGGTGTTTGCATCCATGGCCTCGGAACGGCGCTTGACC
TTGTACCGCAGGCTTGGGAGCCTCGAAGCAGGGGATCAGCCAGCCACTGC
AGTCCATGTCGGCCGGTGGCGGGATGGGGGTGATCGACATGCACCAGGCC
GATAAGAAGAGGTGGGCTGCCTGTTATACCGTAGCCGCCGAATGGGGGAG
GGAGCGTATGAGCGGCAGACGGGGCGACACAGACAGTTCCATCGTCAACC
GCGATTAGATTGCGTGTTGGCTGGTGCTGCTCCTTGACTCAATAGTACCT
GAAGTTATATTCAAGCCGAAGAGTGCGTGCCTGCTTTTTTCTTCTTCTTC
TGAAGCCCTGCTCTTATGTTGTTGATGTGTTGTCGGCCGAGCTGTTGCTC
TTCTCCGAGTCGTAACCGCTTCGCCTTTTGGGTAATTCAGCAGTGTCTCG
AGAGGCCCAACACCCACTAGCTTTCTGCCTGCGCACCCCTCAGTTTTTGC
GTGGAGTGAGTGATGCCGGCGTTGGGCCAAGCGCGTAGGCTGCGACATCA
TGGCCTAAATAGCATCGGTCGTTTTTTTTTTCTGCCCAGGAGGAATCTCC
CAACAAAAGATGTGGCTCTGGACTTTTGGACTGGTGTGGACCGGTCTTTC
CCTTCAGATCATTGGGCTACATGGTGGCCTTGCGAACCTGACTTTCTGAC
ACGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCGGGCCCCCCCCCCCCCCCGCCCCCCCCCCGGCC
GACAAACAGGGGAGGGGGGCTGCCCCCCCNNNNNNNNNNGTGTGTTCCTC
CCCCCGGCGTGTTTGTGGCAGTGGTTGGCCTTGCGCCCCTTTTTTTTTTT
TTTTCACCCCCCCCCCCCCCCCCCCTCTTGCTGCACACCACATCTCCACT
GCAGGATGGGAGGCCCGTCCGATACACCAGCGCCGCCGCCGGCGCGAAAA
AAACGGGGTCTGTTCTCCAACCCCACAAGAGTTCTGCTCCTCAAGGTGCC
GCTTGGGTGCAGTATTGAGGGAAGCTAAAATGGCTGCTAGGATTGCGGGC
CTGTCTCGAGGTCGACGGAACAGATCAGGCGCTCGTGTTGTGCTCTTTTT
TTCGTAAATACAAATACATACAGTATGTACGTGTATTGTCGTTGGAGCTG
CTCTTGTGGCCGCTTTGTTTTGCCGGCCTTGTCGTGTGTTGTTTTACTTT
ACAACTTTACTTTTCTGTTCTCTCTTTCCTCACTCTCCCTCCTCTCTTCT
TTGCGTTGTAACGTGCCTCCGTTTTTGGTTGCGCTCCACAAGCTCTCTTT
CGTAAGAAAGGTTCGCAAGAAAAGTTCGTAAGAAAAGTTCGTAAGAAAAG
ACGCTCCGCCCCTGTGTTGCCGAAGACAACACCACGTTCAAGTCCTTCAA
ATGAACATCATCGTGGCTGTGCACCGCGATTTGGTGCCGAATGCTTCCTC
CAACCGTAGTAGATCCAAAGATCGAGCAAGGCAGCTTGTTGTAGGCTGTT
GGTAGCAAGGTGATGCAGGTTAGTAAGAGATCAATAGATCGAGCAAGACA
GCTTTGTTGTAGGCTGTTGGCAGCAAGCTGATGCAGGTAGTAAGTAAACC
CGGGCTGTTGAGGCCGAATAGCTCCACTCTTTCATGTCTAGTAGGCTCCC
AAGACTCATATGTGCCTGGAAATGGAGCTTGCGCGACACACGCGCATCTC
AACGGCTTTTTCTTCCTCTTCTTCTTCCTCCCCCTCGTCCTCCTCTCCCT
GCAACCCCACGTGCCTGGCTTGCATCTCTTCTCTGCGCGCGTGTCTTACA
TCCATCTCCCCTCTGCTCGTCGCCCCGTTTCGGGGCTTTTCATTCTGGGT
GCGCGATGTGTATTCTGTGGCAGAATATGGTGGGGCCCGGGGAGGTGGAC
GACGAGTTGGAAGGCGAAACGTCCGGAGAGTGCGAACGGTTCGGTCCCGT
CAGGCGGTGTCTCATCTTTGAGATCAAGGTGAGGGCTGCTCCCGCCTCTT
GCTGTTGCATCGGGGCCATGGCGTGTGCGTGCCGAGCAACCTGAACCTGG
AGACCCTGCGTGCCGGCTTATCTGTCCTTTTTTTTTGCACCCCTGCGTGA
GTACAGCGCCTTGGGGAAATAGTAGAACCGGGCGTTAACGCACCGGGCAT
GTGGAAGCGGCTAGTTTGAGCACGAGCAAGCACTGGTGTGTAGGCCACGC
TAAAGACATGAGTGGGCTGCTGCGGGGGAGTACCTGATGCAGTAGCGCCG
GGTCGCAAAACACGTGTCTGTTTGCCCCGGAACGCGCGAGTCAATGCGAG
TCGCCATGCTACATAGCTCCAGGTCAAGACGCTATGCAATACCGCGCGAA
AGTCGGGATGGTATTCAGGAGAAGGTGTTCGACAATACTCTAGAGAACAA
AGAGGCTGCCCCCAGGAAATCGGCTCCCGTGTACATACTACAGGCTAGTA
CTTCCAAGTGTATGTTGTGGAGCTGTTACTCCCAGTCCCACCCCCCCTTC
CGGGCTTGTCAGCCGTGCTCCCAGTGCAGGTCCAGCTTTAATCCCGATCC
ACCCCATTTGCCGCACCACAATCACTCCTGTCTAATGTGCCTGCGCCTTG
TTTTGGTCTCCCCACTGACTGATGCTACCTTCTCGCGGGTTTTTTAATGC
GGGCGGCTTTCTTAGGGAGGGGAGACGCCGGACACGCAGAGGGTTCGGAT
CTTCGTGGCGTTCGAAAAGCAAGAGAGCGCCGTAAAAGGTTAGTTGGGTT
AGTAAGGGAGAGGGGGTTTCCTACGCATAACCCGAGCCTGCCGCGGCACG
CCGGACGCATTCTTCTGTAATTCGCAGTACCTCTCCGGCCCATACACCCA
TGTTGACACGTGTTGATCTCCCGGCAATCTTTTTCAACTCCACACACCCG
TCTGTGCTGCTGCAGCAACAGCAGCAATGGGTGTCACCCTTTTGCCATTG
GCTGTTTCTATGGCCTTTTGTCTGTCTTCGCGCGCTACTGCCGCATGCAA
CACCAACTTCGTTGTGTGGCGCAGAACAATCGGCAACACGATTTCGACAG
GATTTTGTTTTTCTGCAGCGAGCATGGCGTATATGTGGATCGTTTCGTGT
GGGTTTGCCCCCCGACTTGTTGAGTTTTCTTTTAATCTATTTCACGGAGA
ACCTTTGGCTTGTTTGCACTCAGCTGACTTTTGTTCCAATCTGATGATGA
TCTCTTCCCACCGGCTGCCCGCGACGAACGAATCATGGACGATTGACAAA
CAGCCTACCTCGAGATGAACGGCCGGTTCTTCGGAGGGCGACAAATCGCG
GCTTCGTTCTACAAGGAGGACAAGTTCGATGCTTTAGACCTAGAGCCACA
ACCGGATGAAGAAAAATAGCACAGCACCTTGTTGTTGCCACCGATTCGGC
TTTGCTTTTAGCATTCCTAGATATCAACAGTGTATCGGTGATAAAGCCGA
CGCTACTGCAGGTGGTGGGTCTCAAGTGCCGTTTTCAACGTGCATTGTTT
GGGCGCAGAATGTAATAGGAGCGGTTGATTGTGTCTCTGATGAATGTTGA
GGGCTGAGCATCACTGCGGGACAGAGTTCTCTGGAAAGGTTTCCTTTCAA
ATCTCCGTAGATTTTCTGGAAATGTTTCCTTTCAAATCTCCGTAGATTTC
GGCACCTCCTTGCATCCGAGAAATCGGACGTCCAAAAGCAGCGTTCACCT
AGACACCATGAGGGTTTTTGTTGTGATCGTCGCCGCGAAAGAGGTGCATG
TATGTAGGATTCAAACTTGCCCGAACGGCGAATGCTCGGGAATAGTTTCG
ATGTAGGCATCCGCTCTGGTTGTTGCGCCAGCAGAAGAAACGCGGGGTCA
GTATACGGGACGCGGAGCGCAGGGGTGTCGCGTATAGTGTACGGAACAGA
CTTTCGGTCGGGGAAACCTACAGTAGTATCTACATACCAGCTGGAGCGGC
AGCGGGGACTGGATTTTGGAGACACGTGTAGCGCAGCACGCGATTGTCCC
AGTATTTTCGGCATCAGGAATTCGCTTTTACTGAAAATCTCGGGCACCCA
GCTTTTGTGCCAACCTCACCCAAAGGCTGGATCGAGGCACCACCTACATG
ATGATGTAGATATGTTGCACTTAAGAACTGGGAGGGTTCGATCGCCCAGC
CTGAATGCCACTTTACATCGCAGCAGCGGTTCAAAAATATGCTCGCACGC
GGTTGGCAGTCGTTGAATGGAACGCTCTGTGTCATGGCCCTCTTGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6155:4890..11289-

>mRNA_L-elsbetiae_contig6155.14727.1 ID=mRNA_L-elsbetiae_contig6155.14727.1|Name=mRNA_L-elsbetiae_contig6155.14727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig6155:4890..11289- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCCCTAGAGGCGACCATGGGGCGCGGGCGAGGTCGCGGGCTGTC
GAACCTCCCGGCGTGGATGACTAAGGGCAAGGGAGCGGCGCCGGGATCTC
CGGAGAACATACCGATGGCCGCCCTAGAGGCGACCATGGGGCGCGGGCGA
GGTCGCGGGCTGTCGAACCTCCCGGCGTGGATGACTAAGGGCAAGGGAGC
GGCGCCGGGATCTCCGGAGAACATACCGGAACCCCCCACTCCCGGCAGAG
GCCCATCCCCCGCCGCCCCCGGACAGTTCGACAGCGTTCCCGAGGGCGGC
CGTCGGCAGGGTAGATTTGGGCCGCAGGAGAAAGTTGGTGGTGCTGGTGC
TGGTGCTGGTGGTGGTGCTGGTGGCGGTGCCGGTGTTGGAGCGGGAGCGG
AGAGCGGTATGAACTTTGCGGAGCGCATGATGGCGAAGATGGGGCACACG
CAGGGGCAAGGAACCCCCCACTCCCGGCAGAGGCCCATCCCCCGCCGCCC
CCGGACAGTTCGACAGCGTTCCCGAGGGCGGCCGTCGGCAGGGTAGATTT
GGGCCGCAGGAGAAAGTTGGTGGTGCTGGTGCTGGTGCTGGTGGTGGTGC
TGGTGGCGGTGCCGGTGTTGGAGCGGGAGCGGAGAGCGGTATGAACTTTG
CGGAGCGCATGATGGCGAAGATGGGGCACACGCAGGGGCAAGGCTTGGGA
GCCTCGAAGCAGGGGATCAGCCAGCCACTGCAGTCCATGTCGGCCGGTGG
CGGGATGGGGGTGATCGACATGCACCAGGCCGATAAGAAGAGGCTTGGGA
GCCTCGAAGCAGGGGATCAGCCAGCCACTGCAGTCCATGTCGGCCGGTGG
CGGGATGGGGGTGATCGACATGCACCAGGCCGATAAGAAGAGGATGGGAG
GCCCGTCCGATACACCAGCGCCGCCGCCGGCGCGAAAAAAACGGGGTCTG
TTCTCCAACCCCACAAGAGTTCTGCTCCTCAAGGATGGGAGGCCCGTCCG
ATACACCAGCGCCGCCGCCGGCGCGAAAAAAACGGGGTCTGTTCTCCAAC
CCCACAAGAGTTCTGCTCCTCAAGAATATGGTGGGGCCCGGGGAGGTGGA
CGACGAGTTGGAAGGCGAAACGTCCGGAGAGTGCGAACGGTTCGGTCCCG
TCAGGCGGTGTCTCATCTTTGAGATCAAGAATATGGTGGGGCCCGGGGAG
GTGGACGACGAGTTGGAAGGCGAAACGTCCGGAGAGTGCGAACGGTTCGG
TCCCGTCAGGCGGTGTCTCATCTTTGAGATCAAGGGAGGGGAGACGCCGG
ACACGCAGAGGGTTCGGATCTTCGTGGCGTTCGAAAAGCAAGAGAGCGCC
GTAAAAGGGAGGGGAGACGCCGGACACGCAGAGGGTTCGGATCTTCGTGG
CGTTCGAAAAGCAAGAGAGCGCCGTAAAAGCCTACCTCGAGATGAACGGC
CGGTTCTTCGGAGGGCGACAAATCGCGGCTTCGTTCTACAAGGAGGACAA
GTTCGATGCTTTAGACCTAGAGCCACAACCGGATGAAGAAAAATAGCCTA
CCTCGAGATGAACGGCCGGTTCTTCGGAGGGCGACAAATCGCGGCTTCGT
TCTACAAGGAGGACAAGTTCGATGCTTTAGACCTAGAGCCACAACCGGAT
GAAGAAAAATAG
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