mRNA_L-elsbetiae_contig6154.14725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6154.14725.1
Unique NamemRNA_L-elsbetiae_contig6154.14725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6154.14725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6154contigL-elsbetiae_contig6154:7677..8392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.8188064-UTR-L-elsbetiae_contig6154:7676..80261622816673.8188064-UTR-L-elsbetiae_contig6154:7676..8026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 7677..8026 +
1691683730.1224911-UTR-L-elsbetiae_contig6154:7676..80261691683730.1224911-UTR-L-elsbetiae_contig6154:7676..8026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 7677..8026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.8297865-CDS-L-elsbetiae_contig6154:8026..83921622816673.8297865-CDS-L-elsbetiae_contig6154:8026..8392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6154 8027..8392 +
1691683730.1341422-CDS-L-elsbetiae_contig6154:8026..83921691683730.1341422-CDS-L-elsbetiae_contig6154:8026..8392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6154 8027..8392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6154.14725.1prot_L-elsbetiae_contig6154.14725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6154 8027..8392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6154.14725.1

>prot_L-elsbetiae_contig6154.14725.1 ID=prot_L-elsbetiae_contig6154.14725.1|Name=mRNA_L-elsbetiae_contig6154.14725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MASREKRQPQQMERRSRGHDGSKGGASLYVCIEQQKAKLGARARPAISVS
AQRLCLSLSVRPVLPCLFHRPPKTPKRESNRIESNRIESNRIESNRTIIP
CLDKRTGHISLHDHSHEVSTTT
back to top

mRNA from alignment at L-elsbetiae_contig6154:7677..8392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6154.14725.1 ID=mRNA_L-elsbetiae_contig6154.14725.1|Name=mRNA_L-elsbetiae_contig6154.14725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=716bp|location=Sequence derived from alignment at L-elsbetiae_contig6154:7677..8392+ (Laminarionema elsbetiae ELsaHSoW15)
CCTACATTTTCCGCACAATGTGTTATTTCTCTTCAAGTGAAAGTTTCTTA
CCGGGGTGGGGGGCTCAGTGGCTGCGATCGGGGCCGGAGTCGCCGCGACG
GGGGCCGCGGTGGGTGGTGGCACTGCTATAACCGGTCTCTGCGGAAATAA
TAATTAATGTTCCGTTTCCGGTTTTTTTCGTTGTTGTCGATTTCTTTAGG
GGGGGCGTGACGAAGGCACGCAAAAGGTGCCTCAACATCGATGGTGCTGA
ATGGATGTTCGTAACGGTGTCGGGGATCGTCCACAAGTTTTTGCTGCTGC
TGCGCTATCTTGCCCCGTCTGCAAAACATCTATAGCCTGCATTTCAATAA
ATGGCATCAAGAGAGAAGCGGCAGCCGCAGCAAATGGAGCGCAGAAGCCG
CGGCCACGACGGCTCTAAAGGGGGAGCGAGTCTCTACGTATGTATAGAGC
AGCAAAAAGCCAAACTGGGTGCGCGCGCCCGACCGGCTATTTCAGTATCC
GCTCAACGGCTGTGTCTGTCCTTGTCTGTCCGTCCGGTTCTGCCCTGCCT
TTTTCATCGCCCACCGAAAACGCCAAAACGTGAATCGAATCGAATCGAAT
CGAATCGAATCGAATCGAATCGAATTGAATCGAACCGAACGATAATACCC
TGTCTGGACAAGCGAACAGGACATATCTCCCTGCATGATCACTCGCACGA
GGTTTCGACAACAACA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6154:7677..8392+

>mRNA_L-elsbetiae_contig6154.14725.1 ID=mRNA_L-elsbetiae_contig6154.14725.1|Name=mRNA_L-elsbetiae_contig6154.14725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig6154:7677..8392+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATCAAGAGAGAAGCGGCAGCCGCAGCAAATGGAGCGCAGAAGCCG
CGGCCACGACGGCTCTAAAGGGGGAGCGAGTCTCTACGTATGTATAGAGC
AGCAAAAAGCCAAACTGGGTGCGCGCGCCCGACCGGCTATTTCAGTATCC
GCTCAACGGCTGTGTCTGTCCTTGTCTGTCCGTCCGGTTCTGCCCTGCCT
TTTTCATCGCCCACCGAAAACGCCAAAACGTGAATCGAATCGAATCGAAT
CGAATCGAATCGAATCGAATCGAATTGAATCGAACCGAACGATAATACCC
TGTCTGGACAAGCGAACAGGACATATCTCCCTGCATGATCACTCGCACGA
GGTTTCGACAACAACAATGGCATCAAGAGAGAAGCGGCAGCCGCAGCAAA
TGGAGCGCAGAAGCCGCGGCCACGACGGCTCTAAAGGGGGAGCGAGTCTC
TACGTATGTATAGAGCAGCAAAAAGCCAAACTGGGTGCGCGCGCCCGACC
GGCTATTTCAGTATCCGCTCAACGGCTGTGTCTGTCCTTGTCTGTCCGTC
CGGTTCTGCCCTGCCTTTTTCATCGCCCACCGAAAACGCCAAAACGTGAA
TCGAATCGAATCGAATCGAATCGAATCGAATCGAATCGAATTGAATCGAA
CCGAACGATAATACCCTGTCTGGACAAGCGAACAGGACATATCTCCCTGC
ATGATCACTCGCACGAGGTTTCGACAACAACA
back to top