mRNA_L-elsbetiae_contig6154.14724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6154.14724.1
Unique NamemRNA_L-elsbetiae_contig6154.14724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6154.14724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6154contigL-elsbetiae_contig6154:1346..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size974
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6154.14724.1prot_L-elsbetiae_contig6154.14724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6154 1545..2039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.7631068-UTR-L-elsbetiae_contig6154:1345..15441622816673.7631068-UTR-L-elsbetiae_contig6154:1345..1544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 1346..1544 +
1691683730.0697482-UTR-L-elsbetiae_contig6154:1345..15441691683730.0697482-UTR-L-elsbetiae_contig6154:1345..1544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 1346..1544 +
1622816673.7862306-UTR-L-elsbetiae_contig6154:2039..23191622816673.7862306-UTR-L-elsbetiae_contig6154:2039..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 2040..2319 +
1691683730.1045086-UTR-L-elsbetiae_contig6154:2039..23191691683730.1045086-UTR-L-elsbetiae_contig6154:2039..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6154 2040..2319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.7759764-CDS-L-elsbetiae_contig6154:1544..20391622816673.7759764-CDS-L-elsbetiae_contig6154:1544..2039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6154 1545..2039 +
1691683730.0833638-CDS-L-elsbetiae_contig6154:1544..20391691683730.0833638-CDS-L-elsbetiae_contig6154:1544..2039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6154 1545..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6154.14724.1

>prot_L-elsbetiae_contig6154.14724.1 ID=prot_L-elsbetiae_contig6154.14724.1|Name=mRNA_L-elsbetiae_contig6154.14724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MLGTSCRKQKSHSSRSSLCVSFIFSVAVDPSTRFPSPISQLTPWFAASPV
RSPCLSAYSATWLSLGSLAAIHGSLPALQNRTKRKNKRAAFLKPSYLRRE
GQWCHIIRTAPSFVARAFTREEHQNTQHTNYIYLKQKPTSNGIYTCFFPT
YSYLCISRDSLFPP*
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mRNA from alignment at L-elsbetiae_contig6154:1346..2319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6154.14724.1 ID=mRNA_L-elsbetiae_contig6154.14724.1|Name=mRNA_L-elsbetiae_contig6154.14724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=974bp|location=Sequence derived from alignment at L-elsbetiae_contig6154:1346..2319+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTGCTCATTTACGCTGAATTATTAACCCCGCATTAAATATGCACGGG
TTTGAGGACAGACGGCGATGGCGCCATACACAACAAACCGTGCCTGCTTT
ACTCTATCCGGGGGCATAACACATCAGGTAGGTACCAGCCAAGCGTAATT
CTTGCCTCAACGTCCATGTTGTGGAACCACTATAACTCCTGCAAAGTAGA
TGTTGGGGACGTCCTGTCGCAAGCAAAAGAGTCACAGCAGCAGGAGCTCG
CTCTGTGTTTCTTTCATATTCTCGGTGGCAGTGGATCCATCCACCCGCTT
CCCTAGCCCAATATCCCAACTGACTCCTTGGTTCGCCGCCTCTCCTGTCC
GCTCTCCGTGTCTTTCTGCCTACAGTGCGACTTGGCTCTCACTGGGCAGT
CTGGCTGCCATCCATGGCTCCCTGCCTGCCTTGCAAAACAGGACCAAAAG
GAAAAATAAACGCGCTGCCTTCCTAAAACCATCCTATTTACGACGCGAAG
GCCAATGGTGCCACATCATCCGCACGGCCCCGAGTTTTGTTGCAAGAGCT
TTCACAAGAGAAGAGCACCAAAACACGCAACACACAAATTATATCTATTT
AAAACAAAAACCCACTTCCAACGGAATCTACACATGTTTTTTTCCTACCT
ACTCCTACCTATGTATCTCACGCGACTCTCTTTTCCCCCCTTAAAACCGG
CGGAGCTACTTATGCAACAGAGAGCCTGACCCGCTCTTCCTCGCGTACAT
CCTGCCATGCCTATCGCACAAGACGTACGCACATCTATCTATCGCACAAA
ACGGCTTGTGGGCGGGAACGACCGGAGAGCGAAAGAAAGGCAAGAGCCAA
AAAGCTGAAAATCGACAAAACAAAAGCACTCCACGAGAGAGCGTGTGACG
ACTGTCTTGTCTGCCTGCCCCCCTTTTCGTTGTGTGAACTACTCCTATAT
AGCAGCTCCCACCACGAGTGTATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6154:1346..2319+

>mRNA_L-elsbetiae_contig6154.14724.1 ID=mRNA_L-elsbetiae_contig6154.14724.1|Name=mRNA_L-elsbetiae_contig6154.14724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig6154:1346..2319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGGGACGTCCTGTCGCAAGCAAAAGAGTCACAGCAGCAGGAGCTC
GCTCTGTGTTTCTTTCATATTCTCGGTGGCAGTGGATCCATCCACCCGCT
TCCCTAGCCCAATATCCCAACTGACTCCTTGGTTCGCCGCCTCTCCTGTC
CGCTCTCCGTGTCTTTCTGCCTACAGTGCGACTTGGCTCTCACTGGGCAG
TCTGGCTGCCATCCATGGCTCCCTGCCTGCCTTGCAAAACAGGACCAAAA
GGAAAAATAAACGCGCTGCCTTCCTAAAACCATCCTATTTACGACGCGAA
GGCCAATGGTGCCACATCATCCGCACGGCCCCGAGTTTTGTTGCAAGAGC
TTTCACAAGAGAAGAGCACCAAAACACGCAACACACAAATTATATCTATT
TAAAACAAAAACCCACTTCCAACGGAATCTACACATGTTTTTTTCCTACC
TACTCCTACCTATGTATCTCACGCGACTCTCTTTTCCCCCCTTAAATGTT
GGGGACGTCCTGTCGCAAGCAAAAGAGTCACAGCAGCAGGAGCTCGCTCT
GTGTTTCTTTCATATTCTCGGTGGCAGTGGATCCATCCACCCGCTTCCCT
AGCCCAATATCCCAACTGACTCCTTGGTTCGCCGCCTCTCCTGTCCGCTC
TCCGTGTCTTTCTGCCTACAGTGCGACTTGGCTCTCACTGGGCAGTCTGG
CTGCCATCCATGGCTCCCTGCCTGCCTTGCAAAACAGGACCAAAAGGAAA
AATAAACGCGCTGCCTTCCTAAAACCATCCTATTTACGACGCGAAGGCCA
ATGGTGCCACATCATCCGCACGGCCCCGAGTTTTGTTGCAAGAGCTTTCA
CAAGAGAAGAGCACCAAAACACGCAACACACAAATTATATCTATTTAAAA
CAAAAACCCACTTCCAACGGAATCTACACATGTTTTTTTCCTACCTACTC
CTACCTATGTATCTCACGCGACTCTCTTTTCCCCCCTTAA
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