mRNA_L-elsbetiae_contig615.14721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig615.14721.1
Unique NamemRNA_L-elsbetiae_contig615.14721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 3.910e-105
Identity = 282/553 (50.99%), Postives = 334/553 (60.40%), Query Frame = 1 
Query:   22 MMRTLSIAA-LFALVPGVAPGTNLRSNN------EVVQHATSAAPPTRHATRRLHDFEDSSDSAGDPXXXXXXXXXXAGGYQTEDAYIGCFSDDDKTSLLNFGFISADTTVERCWMHCTSKGASFMGLKYGFQCSCGSGEQDEYTANGPGTCPYECTGGGSSNCGGYNAFALYSLGEENSPERVPPMSPSPTTASTGFXXXXXX--FSGSSSTTDTWSLTSSPSFSPT-----SSPTVMDMNDDYGY-MTAPPTPSRPFAPTMPVATPAPSGPPAASPTLXXXXXXXXXXXXTPPPVAPETLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAETTXXXXXXXXXXXXXXXXXXXXXXVSPPIQPSPSSPGSSTPADMVDLLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGDCGQ-LYHSVE--RNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTNQGSC 1626
            M RT S+   L AL       +NLR+ N       VVQHATSAAPPTR A+R L D +DSS  +             +  Y  +  Y+GCF DD+++ LL FGFIS    +ERC+MHCT +GA+FMG+KYGFQCSCG G++++YT NG G C   C G    NCGG  AF LYSLG  +  +    ++PSPT +S GF         S + ST+ TW  T             S+ T+ D  DD GY MTAPPTP+R    ++P  TP+PS                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXX                 ADM +L+D HNEARC+HNADPL WSS VASSAA HA  L   C   L+HS +  R GYGENLYMC+GSD+CYS  +AM+GLY +EV+    V  YGGHATQILWK+TE+VGCVV++CT GGTPYT+LVCQYDPPGNY   YEE+VGLP +  SC
Sbjct:    1 MSRTSSVVVVLLALAHHPVTASNLRTTNLLDTSPTVVQHATSAAPPTRQASRHLRDSDDSSSDS------------DSNDYSPKGLYVGCFQDDEQSPLLEFGFISGGFIIERCYMHCTDEGATFMGIKYGFQCSCGFGQEEDYTLNGTGECTCGCYGERDGNCGGQWAFDLYSLGGGD--DSSTSVTPSPTASSIGFPMPTGFPILSAAPSTSFTWGPTGXXXXXXXXXXXXSTMTMTD--DDGGYSMTAPPTPAR----SLP--TPSPS--------------------------------------MLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCSSSLFHSTQEQRYGYGENLYMCWGSDSCYSHEKAMEGLYYDEVQ-FDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 492
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 8.420e-88
Identity = 246/438 (56.16%), Postives = 282/438 (64.38%), Query Frame = 1 
Query:  346 MHCTSKGASFMGLKYGFQCSCGSGEQDEYTANGPGTCPYECTGGGSSNCGGYNAFALYSL--GEENSPERVPPMSPSPTTASTGFXXXXXX--FSGSSSTTDTWSLTSSPSFSPTSSPTVMDM---NDDYGY-MTAPPTPSRPFAPTMPVATPAPSGPPAASPTLXXXXXXXXXXXXTPPPVAPETLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAETTXXXXXXXXXXXXXXXXXXXXXXVSPPIQPSPSSPGSSTPADMVDLLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGDCGQ-LYHSVE--RNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTNQGSC 1626
            MHCT +GA+FMGLKYGFQCSCG G+++EYT NG G C   C G    NCGG  AF LYSL  G+++S      ++PSPT +STGF         S + ST+ TW  T               M   +DD GY MTAPPTP+R    ++P                            TP P  P         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXV+PP  P+P SP   TPADM +L+D HNEARC+HNADPL WSS VASSAA HA  L   C   L+HS +  R GYGENLYMC+GSD+CYS  RAM+GLY +EV+  + V  YGGHATQILWKSTE+VGCVV++CT GGTPY +LVCQYDPPGNY   YEE+VGLP +  SC
Sbjct:    1 MHCTDEGATFMGLKYGFQCSCGFGQEEEYTLNGTGECACGCYGDRDGNCGGQWAFDLYSLRGGDDSSTS----VTPSPTASSTGFPMPTGFPNLSAAPSTSFTWGPTGXXXXXXXXXXXXXTMTMTDDDGGYSMTAPPTPAR----SLP----------------------------TPSPHMP-------VEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEPVVPRTXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPTAPTPGSP---TPADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCSSNLFHSTQEQRYGYGENLYMCWGSDSCYSHERAMEGLYYDEVQSDS-VLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 391
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.250e-71
Identity = 181/547 (33.09%), Postives = 229/547 (41.86%), Query Frame = 1 
Query:   19 KMMRTLSIAALFALVPGVAPGTNLRSNN------EVVQHATSAAPPTRHATRRLHDFEDSSDSAGDPXXXXXXXXXXAGGYQTEDAYIGCFSDDDKTSLLNFGFISADTTVERCWMHCTSKGASFMGLKYGFQCSCGSGEQDEYTANGPGTCPYECTGGGSSNCGGYNAFALYSLGEENSPERVPPMSPSPTTASTGFXXXXXXFSGSSSTTDTWSLTSSPSFSPTSSPTVMDMNDDYGYMTAPPTPSRPFAPTMPVATPAPSGPPAASPTLXXXXXXXXXXXXTPPPVAPETLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAETTXXXXXXXXXXXXXXXXXXXXXXVSPPIQPSPSSPGSSTPADMVDLLDRH--NEARCIHNADPLAWSSAVASSAAVHANTLMGDC-GQLYHSVE--RNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTNQGSC 1626
            KM  T S+  +   +P  A   NLR+ N       VVQHATSA PPTR A+R L D +DSS  +             + GY   + Y+GCF DD++++LL FGFIS    VERC+MHCT +GA+F+GLKYGFQCSC  G++++YT NGPG                  AF LYSLG                              G  S+T   SL       PT+S T   M          P+ S  + P +              P L             PP                                                                                                                RH    + C+HNADPL WSS VASSAA HA  L   C   L+HS +  R GYG NLY+ +GSD+CYS  +A +GLY +EV+  + V  YGGHATQILWK+ E+VGC  ++CT GGTP+ +LVCQYDPPGN    YEE+VGLP ++ SC
Sbjct:    7 KMSSTSSVVVVVLALPHHAVTANLRTTNILDSSPTVVQHATSATPPTRQASRHLRDSDDSSSGS------------DSNGYSPWELYVGCFQDDEQSTLLEFGFISGGFNVERCFMHCTDEGATFLGLKYGFQCSCDFGQEEDYTLNGPGERLRW-------------AFDLYSLG-----------------------------GGDDSSTSVTSL-------PTASSTGFPMPTXXXXXXXXPSTSSLWHPVL------------RCPRLLLLRDHSDVFPSFPP----------------------------------------------------------------------------------------------------------------RHLYTTSWCVHNADPLTWSSTVASSAAEHAEGLTAQCFSSLFHSTQEQRYGYGANLYIRWGSDSCYSHKKATKGLYYDEVQSDS-VLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQYDPPGNSGGQYEEQVGLPDSRKSC 367
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 3.750e-56
Identity = 98/160 (61.25%), Postives = 116/160 (72.50%), Query Frame = 1 
Query: 1162 SSTPADMVDLLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGDC-GQLYHSV--ERNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNY--NNAYEEEVGLPTNQGSC 1626
            S +P DM  LLD HNEARC+H ADPL WS  V SSAA HA  L   C   L+HS   +R GYGENL+MC+G+DTCY+   AM+ LY EEV+    VTDY GHATQILWKST++VGCV+++CT GGTPYT+LVCQYDP GN   +  Y EEVGLP  + SC
Sbjct:   74 SPSPDDMTGLLDLHNEARCVHGADPLGWSDPVTSSAAEHAARLTDQCTSSLFHSTTDQRYGYGENLFMCWGTDTCYNHEYAMEKLYVEEVQ-FGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIEEVGLPNPENSC 232
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.160e-51
Identity = 93/155 (60.00%), Postives = 112/155 (72.26%), Query Frame = 1 
Query: 1177 DMVDLLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGDC-GQLYHSV--ERNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNY--NNAYEEEVGLPTNQGSC 1626
            DM  LLD HNEARC+H+ADPL WS  V SSAA HA  L   C   L+HS   +R GYGENL++C+G+DTCY+   AM+ LY EEV+    VTDY GHATQILWKST+ VGCV++ C+ GGTPYT+LVCQYDP GN   ++ Y +EVGLP    SC
Sbjct:  166 DMAGLLDLHNEARCVHSADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTREQRYGYGENLFVCWGTDTCYNHDYAMEHLYVEEVQ-FDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEVGLPDPNNSC 319
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.950e-25
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 1 
Query: 1159 GSSTPADMVD----------LLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMG--DCGQLYHS-VERNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNN--AYEEEVGLP 1608
            G + PAD  D          LLD HNEARC+H A+PLAW   +  +A  HA  L    +CG L+ S V  +GYGENLY+CYG+  C      +  +Y+  V+    VT+Y   A ++LW ST ++GC +S C         LVC YDP G+Y +  A E EVGLP
Sbjct:   98 GETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARDHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDD-GPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 261
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.010e-25
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 1 
Query: 1159 GSSTPADMVD----------LLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMG--DCGQLYHS-VERNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNN--AYEEEVGLP 1608
            G + PAD  D          LLD HNEARC+H A+PLAW   +  +A  HA  L    +CG L+ S V  +GYGENLY+CYG+  C      +  +Y+  V+    VT+Y   A ++LW ST ++GC +S C         LVC YDP G+Y +  A E EVGLP
Sbjct:   78 GETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDD-GPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 241
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.130e-25
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 1 
Query: 1159 GSSTPADMVD----------LLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMG--DCGQLYHS-VERNGYGENLYMCYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNN--AYEEEVGLP 1608
            G + PAD  D          LLD HNEARC+H A+PLAW   +  +A  HA  L    +CG L+ S V  +GYGENLY+CYG+  C      +  +Y+  V+    VT+Y   A ++LW ST ++GC +S C         LVC YDP G+Y +  A E EVGLP
Sbjct:  230 GETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDD-GPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 393
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.620e-23
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1 
Query: 1144 SPSSPGSSTPADMVD-LLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGD--CGQLYHSVERNGYGENLYMCYGSDT----------CYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTN 1614
            S +  G+S  AD +D LL+ HN ARC+H   PL ++  VA++A  +A+ L  +  CG    +    G GEN+++C  S +          C+S   AM+  Y+ +V G +  T YG +ATQ+LWKST ++GC +  C   G  Y  LVC+Y PP    +A E EV L  N
Sbjct:   71 SAAGDGASNSADPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADVLASESMCGSA-EAAHSTGLGENVFVCAASSSFSGNGAPTSACFSPEIAMEAFYDSQVGGGSTST-YGPYATQVLWKSTTQIGCALRACEKEGLTYDILVCRYSPPAG-EDATESEVALEAN 237
[Close]
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 9.910e-22
Identity = 61/170 (35.88%), Postives = 88/170 (51.76%), Query Frame = 1 
Query: 1144 SPSSPGSSTPADMVD-LLDRHNEARCIHNADPLAWSSAVASSAAVHANTLMGD--CGQLYHSVERNGYGENLYMCYGSDT----------CYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVVSKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTN 1614
            S +  G S   D +D LL+ HN ARC+H   PL ++  VA++A  +A+ L  +  CG    +    G GEN+++C  S +          C+S   AM+  Y+ +V G    + YG  ATQ+LWKST ++GC +  C   G  Y  LVC+Y PP   +   E EV L  N
Sbjct:   88 SAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSA-ETAHSTGLGENVFVCAASSSLSGDGAPTAACFSPESAMEAFYDSQVGG-GPTSTYGPRATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTT-ESEVALEAN 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig615.14721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX3_ECTSI3.910e-10550.99Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A6H5JZI7_9PHAE8.420e-8856.16SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCL1_9PHAE1.250e-7133.09SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KK50_9PHAE3.750e-5661.25SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJW7_ECTSI2.160e-5160.00Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
D8LED3_ECTSI1.950e-2541.82WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D8LED1_ECTSI2.010e-2541.82PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D7G7J6_ECTSI2.130e-2541.82Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
A0A6H5KE93_9PHAE1.620e-2337.65SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY8_ECTSI9.910e-2235.88SCP-domain containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig615contigL-elsbetiae_contig615:13610..17893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.0
Seed ortholog evalue5.1e-88
Seed eggNOG ortholog2880.D8LJW8
KEGG koko:K19919,ko:K20412
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Exons8
Model size1629
Cds size1623
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.5055583-UTR-L-elsbetiae_contig615:13609..136151622816673.5055583-UTR-L-elsbetiae_contig615:13609..13615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig615 13610..13615 +
1691683729.8318586-UTR-L-elsbetiae_contig615:13609..136151691683729.8318586-UTR-L-elsbetiae_contig615:13609..13615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig615 13610..13615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.5158558-CDS-L-elsbetiae_contig615:13615..137621622816673.5158558-CDS-L-elsbetiae_contig615:13615..13762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 13616..13762 +
1691683729.84796-CDS-L-elsbetiae_contig615:13615..137621691683729.84796-CDS-L-elsbetiae_contig615:13615..13762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 13616..13762 +
1622816673.5272384-CDS-L-elsbetiae_contig615:14166..143491622816673.5272384-CDS-L-elsbetiae_contig615:14166..14349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 14167..14349 +
1691683729.8672755-CDS-L-elsbetiae_contig615:14166..143491691683729.8672755-CDS-L-elsbetiae_contig615:14166..14349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 14167..14349 +
1622816673.5390558-CDS-L-elsbetiae_contig615:14601..147581622816673.5390558-CDS-L-elsbetiae_contig615:14601..14758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 14602..14758 +
1691683729.8847034-CDS-L-elsbetiae_contig615:14601..147581691683729.8847034-CDS-L-elsbetiae_contig615:14601..14758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 14602..14758 +
1622816673.5501301-CDS-L-elsbetiae_contig615:15017..152301622816673.5501301-CDS-L-elsbetiae_contig615:15017..15230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 15018..15230 +
1691683729.89668-CDS-L-elsbetiae_contig615:15017..152301691683729.89668-CDS-L-elsbetiae_contig615:15017..15230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 15018..15230 +
1622816673.5652328-CDS-L-elsbetiae_contig615:15548..160561622816673.5652328-CDS-L-elsbetiae_contig615:15548..16056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 15549..16056 +
1691683729.9085042-CDS-L-elsbetiae_contig615:15548..160561691683729.9085042-CDS-L-elsbetiae_contig615:15548..16056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 15549..16056 +
1622816673.5764568-CDS-L-elsbetiae_contig615:16724..169181622816673.5764568-CDS-L-elsbetiae_contig615:16724..16918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 16725..16918 +
1691683729.924076-CDS-L-elsbetiae_contig615:16724..169181691683729.924076-CDS-L-elsbetiae_contig615:16724..16918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 16725..16918 +
1622816673.5889764-CDS-L-elsbetiae_contig615:17253..174101622816673.5889764-CDS-L-elsbetiae_contig615:17253..17410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 17254..17410 +
1691683729.9344034-CDS-L-elsbetiae_contig615:17253..174101691683729.9344034-CDS-L-elsbetiae_contig615:17253..17410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 17254..17410 +
1622816673.6005087-CDS-L-elsbetiae_contig615:17829..178931622816673.6005087-CDS-L-elsbetiae_contig615:17829..17893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 17830..17893 +
1691683729.9482968-CDS-L-elsbetiae_contig615:17829..178931691683729.9482968-CDS-L-elsbetiae_contig615:17829..17893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig615 17830..17893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig615.14721.1prot_L-elsbetiae_contig615.14721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig615 13616..17893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig615.14721.1

>prot_L-elsbetiae_contig615.14721.1 ID=prot_L-elsbetiae_contig615.14721.1|Name=mRNA_L-elsbetiae_contig615.14721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=541bp
MLFSKMMRTLSIAALFALVPGVAPGTNLRSNNEVVQHATSAAPPTRHATR
RLHDFEDSSDSAGDPSDSVGYSSDSAGGYQTEDAYIGCFSDDDKTSLLNF
GFISADTTVERCWMHCTSKGASFMGLKYGFQCSCGSGEQDEYTANGPGTC
PYECTGGGSSNCGGYNAFALYSLGEENSPERVPPMSPSPTTASTGFPSTG
FPFSGSSSTTDTWSLTSSPSFSPTSSPTVMDMNDDYGYMTAPPTPSRPFA
PTMPVATPAPSGPPAASPTLPPAFPTTTLEPTTPPPVAPETLSPVTPETP
SPVTPETRSPVTPETPSPVTPETPSPVTPGTPSPVTPDTPSPIPPEAETT
PSPVTPPPVAPAAPPTPSPVAPVSPPIQPSPSSPGSSTPADMVDLLDRHN
EARCIHNADPLAWSSAVASSAAVHANTLMGDCGQLYHSVERNGYGENLYM
CYGSDTCYSGARAMQGLYNEEVEGIAKVTDYGGHATQILWKSTEEVGCVV
SKCTAGGTPYTYLVCQYDPPGNYNNAYEEEVGLPTNQGSC*
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mRNA from alignment at L-elsbetiae_contig615:13610..17893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig615.14721.1 ID=mRNA_L-elsbetiae_contig615.14721.1|Name=mRNA_L-elsbetiae_contig615.14721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4284bp|location=Sequence derived from alignment at L-elsbetiae_contig615:13610..17893+ (Laminarionema elsbetiae ELsaHSoW15)
GTATCTATGCTTTTCTCGAAGATGATGCGTACACTTTCGATCGCGGCGCT
GTTCGCGCTGGTCCCTGGTGTTGCCCCTGGCACAAACCTTCGGTCGAACA
ACGAGGTCGTTCAACACGCAACGAGCGCTGCGCCGCCAACCAGGCACGCG
ACGGTGAGACAATTCTGTATCGCTCGTACTAGTCTGGGGGCTCCAAAATA
ATGTTGTAGCGCAGTTTAACAACATGAACTACGTATGTATGTACACTCTC
TCGTGGAGAATTGCCGCAAGCTGCACTATTCGGACTAAATTTACATTTAG
ACTACACAGTCTAGACATTTTCTATTGCATGAAAGACCACGTACGTACCC
TTATTGCAGCGTGTCGGGGACGATATTTTGCGTCTTTCTTGGGGGTGTTT
TAGTTATCTGTGCTTAGCTGTTGTATTATTTTTGCACGACGTTTTCGACC
CCCTTTTCGACGGGAAGGTTACTCTAACGGTCGTACAACGAACGTGCACC
ACAATTCCGCCCCCCTGTCCCCTTGTCTCCGGTATGGATTCGCATTGCCA
TCAACAGCGCCGCCTCCACGACTTCGAAGACTCTAGTGACTCGGCCGGTG
ACCCCAGTGACTCGGTCGGCTACTCCAGTGACTCGGCCGGTGGTTACCAA
ACGGAGGACGCGTACATCGGTTGCTTCAGCGATGACGACAAAACCTCCCT
TCTGAATTTCGGCTTCATTTCCGCCGACACTACGGTCGAGGTGCGACGTG
TATACATTTACGGTTCAAAGGGGCGAGGGGGGGCCTCAGAATGAGTATAT
ATAGCCGGTTGGCCTGTTTTTTTCGTCGCAGTATCGCCGTCGTAGGTATG
CAGCCGTATATTCGCGAGGGTTGAGGGTTTGGCGTTTGCTCCTATTGTAG
CATTATTGAAACACATGTATTTGGCTTTATTTAGCCATGACACCTCTCCA
TCGCCCTCGCCCATCGCTCCTGTTGTGCCTGTTGTTCCACAGCGATGCTG
GATGCACTGCACTTCCAAAGGCGCGAGCTTCATGGGCCTCAAGTACGGCT
TTCAGTGTTCGTGCGGCTCTGGCGAGCAAGACGAGTACACCGCGAACGGT
CCCGGCACCTGCCCGTACGAGTGCACCGGGGGCGGTTCTTCCAACTGTGG
TGAGCCCCTCCCCTCCCCCCCTCCCCGAAACCCCCAAATGCCCGGTCGAA
GTCACGTCTAGTTTACTGTTACGGCGGTGGAACAAAGTCGCTTCCCTCGG
CTTTCGTAGATGCGTACAATAGTCAAGCGTACATATATATACTCCCGCCG
CGCCTCAACCACACCGTCTCTAGTCTACTCTCCTCTACATCAACCCCGTT
CCTCCCTCCTCGTTCTGTTTTCCCCTGCCGCGTCGCGTCTTCTTCCTCAT
GAGGACAGGCGGATACAATGCCTTCGCTCTGTACTCTCTGGGGGAGGAGA
ACAGCCCCGAGCGAGTGCCGCCAATGTCGCCTTCACCGACGACCGCATCG
ACGGGCTTTCCGTCGACTGGATTCCCCTTCTCCGGCTCCTCGTCCACGAC
GGACACCTGGAGCCTGACTTCCAGCCCGTCGTTCTCGCCGACCTCGTCTC
CGACTGTCATGGACATGAACGGTGAGTGCTGGTGGGTCATGGTGTTGGTT
GCCATATGTGGTAACAAGCCATATCGCAGTCAGGAGATTACTCCGACCTC
CTCGATATTTATTAAGTAGGCGTTACGTCGACCTTTCTTTTGCCGATAAT
TGATGTATATAAATATTGCCGGTTGGCTCTCAAGCACACCGGGCGTGCAC
TCTGGCTTCCTTCTGTTACGAGGCGTGTGTGCACCGCCCTCCCCCCCCCC
GTCCTGCCAGCCTAAGCCTACCCCCCAACAATATCCCCCTCCAATGAGCT
GCTTCCCCTCATTGCTTCCATCGTGCACAAACACCGCAGATGACTACGGT
TACATGACGGCACCCCCGACACCGTCAAGGCCTTTCGCGCCCACCATGCC
CGTCGCGACGCCGGCGCCATCAGGCCCCCCTGCGGCCTCACCGACACTGC
CGCCAGCCTTTCCCACTACTACGCTCGAGCCTACAACACCGCCTCCGGTA
GCCCCCGAGACCCTTTCTCCTGTAACCCCCGAGACCCCTTCTCCTGTAAC
TCCCGAGACTCGTTCTCCTGTAACCCCCGAGACCCCTTCTCCTGTAACCC
CCGAGACTCCTTCTCCTGTAACCCCCGGGACTCCTTCTCCTGTAACCCCC
GATACCCCTTCTCCGATCCCCCCGGAAGCCGAAACAACACCGTCCCCGGT
CACACCTCCCCCTGTCGCTCCCGCGGCACCCCCGACGCCATCTCCGGTTG
CCCCGGTCTCGCCCCCCATCCAGCCTTCTCCTTCTTCCCCGGGGTCGTCT
ACTCCCGCGGACATGGTGGACCTGCTTGATCGGCACAACGAAGCGAGGTG
GGAAGTAATGCGGATTGCTGAATCTGTTGCATCACGCGTGGTGAACGTGT
TTGTTTCTCTGCTTGGTTATTAAAAGAGCTTGAATAGTTGCGGGGATATG
ACCTTGGAAATAATGCTGCCTGCTGAATCTGTCGCACCACGCGTGGTGAA
CGTTTTTGTTTCTCTGCTTGGTTATTAAAAGAGCTTGAATGGTTGCGGGG
ATATGACCTTGGAAATAATGCTGCCTGCTGAATCTGTCGCACCACGCGTG
GTGAATCTTTTTTTTCTGCTTGGTTAAAGAGCGTAGATCAATAGTTGCGG
GGGTAACCTTTTTTTTTGGGCCGCTGCCGGGCGTGCCCCGCCGCTGTTTG
CTGGGACGGACGGGCGCCTTCTGGTGGGAGTTTTATCTTCTCATTTTTGA
GCTTTGTTTGTTCGTTGTCTTATCACGCCCATGCTACCTTGGCCTCTGAA
CCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCGCGCCCTACGGA
CAACCCCCCCCCCCGCAGGCGAGCGCGCGGGGCGGNNNNNNNNNNTTTGG
GGGGTGTTTTTTTTTTTAATTTTTTGGGTTTTTTTGTTTGTTTTTCTTAC
ACCCCCCTGCCCACTTGGACCCTTAACCCCCCCCCCCCCCCCCCCCCGTC
TTTCCGGCGAGTCAGATGCATCCACAACGCCGACCCTTTGGCGTGGAGCA
GCGCCGTGGCGTCCTCGGCGGCGGTGCACGCCAACACGCTCATGGGCGAC
TGCGGGCAGCTGTACCACAGCGTCGAGCGCAACGGCTACGGCGAAAACCT
TTACATGTGCTACGGCAGCGACACGTGCTACAGCGGCGCGCGGGCGATGC
AAGGGCTATGTGAGTTGTTTTGGCTTATCATGCCCCTGGGTACACATAGC
TCGTAGCTCGGTGCGCTTGGTGTGCGGTAGAGAGCGTGTCAGAACCAAGC
ATGTTGTCGTCGTTGTTTTTGCTGGTTCTCGTGTCAAACATTTGGGCAGC
GAGTATCACACGCGAGCGTTGCAAGCCACCAGCAAGCTCCCTCGGCTCTT
GTCGTGAATCATGAGTTTGGGCAACCGCGCAGTTAGCTCTCCCTCACGAG
TCCACAATTTTCCCTCAACGCACCTCCGCCCACCCTCCCTGTATACTCGC
CACCCCGCCGTTGTTCCTGAATCCACGGATGAATGCAACAACAGACAACG
AGGAGGTCGAGGGCATCGCAAAGGTAACCGACTACGGCGGACACGCCACT
CAGATCCTATGGAAGTCGACGGAGGAAGTGGGGTGCGTGGTGTCGAAGTG
CACCGCCGGCGGCACCCCGTACACCTACCTCGTCTGCCAGTACGACCCTC
CGTGAGTGTATTCTCGAGTTTTATGAAGTGTTGCCCGCCACTACGTCGAA
CGATCTATCTGTGTACCGTGATTGAGTTTTCTGCCAAGTCCTGGAGCAGC
TTCTCTCGTTCGTATGGATGTACATGCGTGAGCGTGTTGGCGCTGCTTGC
TTGGGCATTCCTCCAGCGTGCGGGCCGCCAGTAGCGCATGCAGCGTACGC
CAGGGTATGTATCTAGATCCCGCGGCAAGCACACTTTCAACTTTCACCCC
GAGAGGAATCAATGGACAGGTAGTTCCCCAGATCTCGAACGCTTTTTGTG
ACATCTCTCTGTTCCATTGCCTGGCAATTTTCCGCTTTATGTGCGCTTTT
CCTTCCATCTGCCCTAGATTTTGCAATAAATAGTCTAATACCGATGATCA
TGCGTTTCGAAATTATTCAGGGGCAACTACAACAACGCGTACGAAGAGGA
AGTGGGGCTTCCCACAAACCAGGGCTCCTGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig615:13610..17893+

>mRNA_L-elsbetiae_contig615.14721.1 ID=mRNA_L-elsbetiae_contig615.14721.1|Name=mRNA_L-elsbetiae_contig615.14721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3246bp|location=Sequence derived from alignment at L-elsbetiae_contig615:13610..17893+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTCTCGAAGATGATGCGTACACTTTCGATCGCGGCGCTGTTCGC
GCTGGTCCCTGGTGTTGCCCCTGGCACAAACCTTCGGTCGAACAACGAGG
TCGTTCAACACGCAACGAGCGCTGCGCCGCCAACCAGGCACGCGACGATG
CTTTTCTCGAAGATGATGCGTACACTTTCGATCGCGGCGCTGTTCGCGCT
GGTCCCTGGTGTTGCCCCTGGCACAAACCTTCGGTCGAACAACGAGGTCG
TTCAACACGCAACGAGCGCTGCGCCGCCAACCAGGCACGCGACGCGCCGC
CTCCACGACTTCGAAGACTCTAGTGACTCGGCCGGTGACCCCAGTGACTC
GGTCGGCTACTCCAGTGACTCGGCCGGTGGTTACCAAACGGAGGACGCGT
ACATCGGTTGCTTCAGCGATGACGACAAAACCTCCCTTCTGAATTTCGGC
TTCATTTCCGCCGACACTACGGTCGAGCGCCGCCTCCACGACTTCGAAGA
CTCTAGTGACTCGGCCGGTGACCCCAGTGACTCGGTCGGCTACTCCAGTG
ACTCGGCCGGTGGTTACCAAACGGAGGACGCGTACATCGGTTGCTTCAGC
GATGACGACAAAACCTCCCTTCTGAATTTCGGCTTCATTTCCGCCGACAC
TACGGTCGAGCGATGCTGGATGCACTGCACTTCCAAAGGCGCGAGCTTCA
TGGGCCTCAAGTACGGCTTTCAGTGTTCGTGCGGCTCTGGCGAGCAAGAC
GAGTACACCGCGAACGGTCCCGGCACCTGCCCGTACGAGTGCACCGGGGG
CGGTTCTTCCAACTGTGCGATGCTGGATGCACTGCACTTCCAAAGGCGCG
AGCTTCATGGGCCTCAAGTACGGCTTTCAGTGTTCGTGCGGCTCTGGCGA
GCAAGACGAGTACACCGCGAACGGTCCCGGCACCTGCCCGTACGAGTGCA
CCGGGGGCGGTTCTTCCAACTGTGGCGGATACAATGCCTTCGCTCTGTAC
TCTCTGGGGGAGGAGAACAGCCCCGAGCGAGTGCCGCCAATGTCGCCTTC
ACCGACGACCGCATCGACGGGCTTTCCGTCGACTGGATTCCCCTTCTCCG
GCTCCTCGTCCACGACGGACACCTGGAGCCTGACTTCCAGCCCGTCGTTC
TCGCCGACCTCGTCTCCGACTGTCATGGACATGAACGGCGGATACAATGC
CTTCGCTCTGTACTCTCTGGGGGAGGAGAACAGCCCCGAGCGAGTGCCGC
CAATGTCGCCTTCACCGACGACCGCATCGACGGGCTTTCCGTCGACTGGA
TTCCCCTTCTCCGGCTCCTCGTCCACGACGGACACCTGGAGCCTGACTTC
CAGCCCGTCGTTCTCGCCGACCTCGTCTCCGACTGTCATGGACATGAACG
ATGACTACGGTTACATGACGGCACCCCCGACACCGTCAAGGCCTTTCGCG
CCCACCATGCCCGTCGCGACGCCGGCGCCATCAGGCCCCCCTGCGGCCTC
ACCGACACTGCCGCCAGCCTTTCCCACTACTACGCTCGAGCCTACAACAC
CGCCTCCGGTAGCCCCCGAGACCCTTTCTCCTGTAACCCCCGAGACCCCT
TCTCCTGTAACTCCCGAGACTCGTTCTCCTGTAACCCCCGAGACCCCTTC
TCCTGTAACCCCCGAGACTCCTTCTCCTGTAACCCCCGGGACTCCTTCTC
CTGTAACCCCCGATACCCCTTCTCCGATCCCCCCGGAAGCCGAAACAACA
CCGTCCCCGGTCACACCTCCCCCTGTCGCTCCCGCGGCACCCCCGACGCC
ATCTCCGGTTGCCCCGGTCTCGCCCCCCATCCAGCCTTCTCCTTCTTCCC
CGGGGTCGTCTACTCCCGCGGACATGGTGGACCTGCTTGATCGGCACAAC
GAAGCGAGATGACTACGGTTACATGACGGCACCCCCGACACCGTCAAGGC
CTTTCGCGCCCACCATGCCCGTCGCGACGCCGGCGCCATCAGGCCCCCCT
GCGGCCTCACCGACACTGCCGCCAGCCTTTCCCACTACTACGCTCGAGCC
TACAACACCGCCTCCGGTAGCCCCCGAGACCCTTTCTCCTGTAACCCCCG
AGACCCCTTCTCCTGTAACTCCCGAGACTCGTTCTCCTGTAACCCCCGAG
ACCCCTTCTCCTGTAACCCCCGAGACTCCTTCTCCTGTAACCCCCGGGAC
TCCTTCTCCTGTAACCCCCGATACCCCTTCTCCGATCCCCCCGGAAGCCG
AAACAACACCGTCCCCGGTCACACCTCCCCCTGTCGCTCCCGCGGCACCC
CCGACGCCATCTCCGGTTGCCCCGGTCTCGCCCCCCATCCAGCCTTCTCC
TTCTTCCCCGGGGTCGTCTACTCCCGCGGACATGGTGGACCTGCTTGATC
GGCACAACGAAGCGAGATGCATCCACAACGCCGACCCTTTGGCGTGGAGC
AGCGCCGTGGCGTCCTCGGCGGCGGTGCACGCCAACACGCTCATGGGCGA
CTGCGGGCAGCTGTACCACAGCGTCGAGCGCAACGGCTACGGCGAAAACC
TTTACATGTGCTACGGCAGCGACACGTGCTACAGCGGCGCGCGGGCGATG
CAAGGGCTATATGCATCCACAACGCCGACCCTTTGGCGTGGAGCAGCGCC
GTGGCGTCCTCGGCGGCGGTGCACGCCAACACGCTCATGGGCGACTGCGG
GCAGCTGTACCACAGCGTCGAGCGCAACGGCTACGGCGAAAACCTTTACA
TGTGCTACGGCAGCGACACGTGCTACAGCGGCGCGCGGGCGATGCAAGGG
CTATACAACGAGGAGGTCGAGGGCATCGCAAAGGTAACCGACTACGGCGG
ACACGCCACTCAGATCCTATGGAAGTCGACGGAGGAAGTGGGGTGCGTGG
TGTCGAAGTGCACCGCCGGCGGCACCCCGTACACCTACCTCGTCTGCCAG
TACGACCCTCCACAACGAGGAGGTCGAGGGCATCGCAAAGGTAACCGACT
ACGGCGGACACGCCACTCAGATCCTATGGAAGTCGACGGAGGAAGTGGGG
TGCGTGGTGTCGAAGTGCACCGCCGGCGGCACCCCGTACACCTACCTCGT
CTGCCAGTACGACCCTCCGGGCAACTACAACAACGCGTACGAAGAGGAAG
TGGGGCTTCCCACAAACCAGGGCTCCTGCTGAGGGCAACTACAACAACGC
GTACGAAGAGGAAGTGGGGCTTCCCACAAACCAGGGCTCCTGCTGA
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