mRNA_L-elsbetiae_contig6149.14719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6149.14719.1
Unique NamemRNA_L-elsbetiae_contig6149.14719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A6H5KXT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.560e-34
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query:    1 DVIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            DV+DGIGSAGGSLARG TDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV
Sbjct:  825 DVLDGIGSAGGSLARGLTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 894          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: D7FMF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.200e-33
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1
Query:    1 DVIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            DV+DGIGSAGGSLARG TDGVSGLIKNPLKGAESGG AGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV
Sbjct:  472 DVLDGIGSAGGSLARGLTDGVSGLIKNPLKGAESGGLAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 541          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7S2LN01_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LN01_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.510e-19
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    4 VIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            ++DGIG+    L +G  DGVSG+I+ P++GAE GG  GFAKGVG G+LGLVVKPVVG++DAATD++ GV
Sbjct:  436 IVDGIGTGSAKLLKGVYDGVSGVIRAPMRGAEKGGPEGFAKGVGKGLLGLVVKPVVGLSDAATDIMIGV 504          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7S2PQX2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQX2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.530e-19
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    4 VIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            ++DGIG+    L +G  DGVSG+I+ P++GAE GG  GFAKGVG G+LGLVVKPVVG++DAATD++ GV
Sbjct:  647 IVDGIGTGSAKLLKGVYDGVSGVIRAPMRGAEKGGPEGFAKGVGKGLLGLVVKPVVGLSDAATDIMIGV 715          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A4D9D9K3_9STRA (FYVE-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9K3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.820e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 DVIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            DV++G+G  G  L RG  DGV+G++  P++GAE  GF G  KG+G  MLGLVVKPVVG+ DAA+D+LQGV
Sbjct: 4162 DVLEGLGLGGKRLMRGLVDGVTGVVAAPVRGAEREGFRGMVKGMGKXMLGLVVKPVVGLADAASDVLQGV 4231          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7S0CCM6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCM6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-16
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    7 IDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            ++G+GS G    +G  DGV+G+ + P++GAE  G  GFAKGVG G+LGL+VKPV+G+TDAATD++ GV
Sbjct:  528 VEGVGSGGVKFFKGVMDGVTGVYRAPMRGAEKRGVEGFAKGVGKGLLGLLVKPVIGLTDAATDVMIGV 595          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7R9WQQ9_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQQ9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.930e-16
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   37 LARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            L +GF DGV+G++K P++GAE  G  GFAKGVG G+LGL+VKP++G++DAATD++ GV
Sbjct:   15 LVQGFQDGVTGVVKAPMRGAERRGIEGFAKGVGKGLLGLLVKPMIGISDAATDVMIGV 72          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7S2WM70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM70_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.910e-16
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 VIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQ 204
            ++ G+G+A  S+  G  DG++GL+  P+ G E GGF G  KG G GM+GL+VKPVVG++DAATD+ +
Sbjct:   43 LLQGLGNASTSVVGGVFDGITGLVTAPVNGMEKGGFLGGVKGAGKGMVGLIVKPVVGISDAATDVFE 109          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: B7G5J2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5J2_PHATC)

HSP 1 Score: 78.6 bits (192), Expect = 2.220e-15
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 DVIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            +V  G+GS    LA GF +GV+G+++ P++GAE  GF GFAKG+G G+LGL+VKPV+G++D  TD++ GV
Sbjct: 4295 NVALGLGSGVQKLALGFVEGVTGVVQAPMRGAEKRGFEGFAKGIGKGLLGLLVKPVIGLSDGITDVMIGV 4364          
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Match: A0A7S2WGV8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGV8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.100e-15
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   10 DGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLGLVVKPVVGVTDAATDLLQGV 210
            +G+ S    L RG  +GV+G+++ P+KGAE  G  GFAKG+G G+LGL+VKPV+G++DAATD++ GV
Sbjct:   29 EGVESGVIKLIRGIVEGVTGVVRAPIKGAEKRGVEGFAKGIGKGLLGLLVKPVIGLSDAATDVMIGV 95          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6149.14719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXT8_9PHAE3.560e-3497.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF7_ECTSI2.200e-3395.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2LN01_9STRA3.510e-1962.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2PQX2_9STRA3.530e-1962.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9D9K3_9STRA2.820e-1758.57FYVE-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S0CCM6_9STRA1.790e-1655.88Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9WQQ9_9STRA4.930e-1660.34Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2WM70_9STRA5.910e-1650.75Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
B7G5J2_PHATC2.220e-1552.86Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WGV8_9STRA4.100e-1553.73Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6149contigL-elsbetiae_contig6149:9439..9648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue8.5e-28
Seed eggNOG ortholog2880.D7FMF7
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Ec32 ortholog descriptionAutophagy-related, C-terminal
Ec32 orthologEc-05_000900.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.3203714-CDS-L-elsbetiae_contig6149:9438..96481622816673.3203714-CDS-L-elsbetiae_contig6149:9438..9648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6149 9439..9648 -
1691683729.6988912-CDS-L-elsbetiae_contig6149:9438..96481691683729.6988912-CDS-L-elsbetiae_contig6149:9438..9648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6149 9439..9648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6149.14719.1prot_L-elsbetiae_contig6149.14719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6149 9439..9648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6149.14719.1

>prot_L-elsbetiae_contig6149.14719.1 ID=prot_L-elsbetiae_contig6149.14719.1|Name=mRNA_L-elsbetiae_contig6149.14719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
DVIDGIGSAGGSLARGFTDGVSGLIKNPLKGAESGGFAGFAKGVGTGMLG
LVVKPVVGVTDAATDLLQGV
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mRNA from alignment at L-elsbetiae_contig6149:9439..9648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6149.14719.1 ID=mRNA_L-elsbetiae_contig6149.14719.1|Name=mRNA_L-elsbetiae_contig6149.14719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig6149:9439..9648- (Laminarionema elsbetiae ELsaHSoW15)
GACGTGATCGACGGCATCGGCTCCGCCGGGGGATCCCTGGCGAGAGGGTT TACCGACGGGGTGTCGGGGCTCATCAAGAACCCCCTCAAGGGCGCCGAGA GCGGGGGGTTCGCTGGGTTCGCCAAGGGGGTGGGCACCGGCATGCTGGGG CTCGTCGTCAAGCCGGTCGTCGGGGTCACCGATGCGGCCACGGACCTGCT GCAAGGTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6149:9439..9648-

>mRNA_L-elsbetiae_contig6149.14719.1 ID=mRNA_L-elsbetiae_contig6149.14719.1|Name=mRNA_L-elsbetiae_contig6149.14719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig6149:9439..9648- (Laminarionema elsbetiae ELsaHSoW15)
GACGTGATCGACGGCATCGGCTCCGCCGGGGGATCCCTGGCGAGAGGGTT
TACCGACGGGGTGTCGGGGCTCATCAAGAACCCCCTCAAGGGCGCCGAGA
GCGGGGGGTTCGCTGGGTTCGCCAAGGGGGTGGGCACCGGCATGCTGGGG
CTCGTCGTCAAGCCGGTCGTCGGGGTCACCGATGCGGCCACGGACCTGCT
GCAAGGTGTGGACGTGATCGACGGCATCGGCTCCGCCGGGGGATCCCTGG
CGAGAGGGTTTACCGACGGGGTGTCGGGGCTCATCAAGAACCCCCTCAAG
GGCGCCGAGAGCGGGGGGTTCGCTGGGTTCGCCAAGGGGGTGGGCACCGG
CATGCTGGGGCTCGTCGTCAAGCCGGTCGTCGGGGTCACCGATGCGGCCA
CGGACCTGCTGCAAGGTGTG
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