mRNA_L-elsbetiae_contig6148.14718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6148.14718.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE) HSP 1 Score: 574 bits (1479), Expect = 6.350e-181 Identity = 547/918 (59.59%), Postives = 595/918 (64.81%), Query Frame = 1 Query: 1 GRKLPLQEAAPRLLHLLRLSWLLAVANLGLGRAAAAARLVTTAEHTYGARRSAWRKASLLLATRPPGGASAAYAQGPASGPRRGQAPPXXXXXXXXXXXXXXXAQSGRGG----RVAGGTGLLGRDPALAMCRFLRGLALLSQGDLESAAGRLEESLDLDPRGRHSAVCLAHVSCFASAAAATDGTEDSPPPSVSRTRELLRLLELGSSAHLESVEQERLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAWILLACVARARGDAGGAVSMFRRALALDPECLEAVYGVARVLQESGDHTASRQLLLFLGERSQEISRGGSVAGXXXXXXRRTGNKSGSRSP-HDRRLRFPLDNDGERRPSSSRGRQQDSDGSWXXXXXXXXXXXXXXXXXXVLPPAAPAEVMWRVARASMAARDWGAAALALGALVASEASGKSERRPEAVQRLYYASFAGAGRGVCSASRGPGRARVLRALAFCQIQRGLYRDALDTVNAVLGRGGXXXXXXXXXXXAM--------------LMLQADALLCLEDGEAVVESSLDRAAQLLSRRQIDMSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKKPNAQEPRAGRGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAATPRDRAVDRDRRLARSAAFNNRAVLLAAAGRGEEACRLLRACLLLLPEEPRPVFNLALALWRLGRRRAACVHWLGARNWLGDAGGDXXXXXXXXXKGDGGRDSVEGFTKLLDAARRRKALLKADAXXXXXXXXXXXXXXXXXXXXXXASFSYPSSFAP--ASHVTEGQGGDPLSLPPIQLCLLDIRCLTWWLGNGLGVDGD-------GCAADGLRGPRGTGFRSLLR 2670 G++LPL EAAPRLLHLLR+SWLLAVANL LGRAAAA+R+V AEH YGARRSAWR+ASLLL+TRP G ASAAY P AP A S GG DPALAMCRFLRGL L+QGDLE+AAGRLEESLDLDPR RH+ VCLAH+SCFASA+ AT T PS RT ELLR+L LGSSAH +S+EQE L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAW+LLAC ARA G+AG AVSMFRRALALDP+CLEAVYGVARVLQESGDH ASR+LLLFLGERSQE+S G + G ++ SRS H RL FPL+ RQ G XXXXXXXXXXXX VLP A AEVMWRVARASMAARDW A LAL LVA+EA+ E P Y+ASFA G G ++ RGPGRARVLRALA+ QIQRGLYRDAL+TV VLG G XXXXXXXXXX LML+ADALLCLE+ E SLDRA +LL+RRQ+D+S+P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX LAR+AAFNNRAVLL A GRGEEACRLLRACLLLLPEEPRP FN +LALWRLGRRR AC HWL AR WLG GG E + KLL++ARRRK L++DA XXXXXXXXX SHVTEG GGDPLSLP IQ+CLLDIRCLTWWL N LGV+ + AA G G RG G RS LR Sbjct: 279 GKRLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRIVCVAEHAYGARRSAWRRASLLLSTRPTG-ASAAYT------PXXXXAP----------LHPLGAATSKHGGVGXXXXXXXXXXXXNDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPAT--TSLRWKPSDERTHELLRVLSLGSSAHFDSIEQEIL-------------LRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAWLLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGGSLPSSNGATSAVHQGRRNSSRSSSHQHRLCFPLE----------ARRQGFQPGGXXXXXXXXXXXXXASGALTVLPVAL-AEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLAYYFASFAKGG-GARASRRGPGRARVLRALAYSQIQRGLYRDALETVGTVLGDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXLMLRADALLCLEEDETCAGDSLDRALRLLARRQVDLSVPPPSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARAAAFNNRAVLLIAFGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWLGVGGGRR-----------------EAYVKLLESARRRKLSLQSDAVNKANKTGGHGDSXXXXXXXXXXXXXXXXXXXXXVTSHVTEGSGGDPLSLPQIQVCLLDIRCLTWWLDNNLGVEDEEQALGPAAAAAGGSHGSRG-GLRSRLR 1102
BLAST of mRNA_L-elsbetiae_contig6148.14718.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 1.930e-127 Identity = 306/512 (59.77%), Postives = 342/512 (66.80%), Query Frame = 1 Query: 1 GRKLPLQEAAPRLLHLLRLSWLLAVANLGLGRAAAAARLVTTAEHTYGARRSAWRKASLLLATRPPGGASAAYAQGPASGPRRGQAPPXXXXXXXXXXXXXXXAQSGRGGRVAGGT--GLLGRDPALAMCRFLRGLALLSQGDLESAAGRLEESLDLDPRGRHSAVCLAHVSCFASAAAATDGTEDSPPPSVSRTRELLRLLELGSSAHLESVEQERLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAWILLACVARARGDAGGAVSMFRRALALDPECLEAVYGVARVLQESGDHTASRQLLLFLGERSQEISRGGSVAGXXXXXXRRTGNKSGSRSP-HDRRLRFPLDNDGERRPSSSRGRQQDSDGSWXXXXXXXXXXXXXXXXXXVLPPAAPAEVMWRVARASMAARDWGAAALALGALVASEASGKSERRPEAVQRLYYASFAGAGRGVCSASRGPGRARVLRALAFCQIQRGLYRDALDTVNAVLGRG 1527 G++LPL EAAPRLLHLLR+SWLLAVANL LGRAAAA+RLV+ AEH YGARRSAWR+ASLLL+TRP G ASA Y P P AP ++ G GG G GRDPALAMCRFLRGL L+QGDLE+AAGRLEESLDLDPR RH+ VCLAH+SCFASA+ AT T PS RT ELLR+L LGSSAH +S+EQE L XXXXXXXXXXXXXXXX XXXXXXVEAW+LLAC ARA G+AG AVSMFRRALALDP+CLEAVYGVARVLQESGDH ASR+LLLFLGERSQE+S G S + G +S SRS H RL FPL+ ++ +G Q G XXX V+ P APAEVMWRVARASMAA+DW A LAL LVA+EA+ Y+ASFA G G ++ RGPGRARVLRALAF QIQRGLYRDAL+TV VLG G Sbjct: 259 GKRLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRLVSVAEHAYGARRSAWRRASLLLSTRPTG-ASATYTAPPPPAPLHPLAP--------------ATSKQGGGGSANGTLRXXXXGRDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPATTTTSLGWEPSDERTHELLRVLSLGSSAHFDSIEQEIL-----------LRGXXXXXXXXXXXXXXXXEAGRCMWRAXXXXXXVEAWVLLACAARATGNAGEAVSMFRRALALDPQCLEAVYGVARVLQESGDHAASRELLLFLGERSQELSGGSSPSSNGATSAVHQGRRSSSRSSSHQHRLCFPLE-------ATRQGFQPSGGGXXXXXGAL------------VVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVAAEATADGVASSREGLAYYFASFAKDG-GARASRRGPGRARVLRALAFSQIQRGLYRDALETVRMVLGDG 724 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6148.14718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6148.14718.1 >prot_L-elsbetiae_contig6148.14718.1 ID=prot_L-elsbetiae_contig6148.14718.1|Name=mRNA_L-elsbetiae_contig6148.14718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=765bp MCRFLRGLALLSQGDLESAAGRLEESLDLDPRGRHSAVCLAHVSCFASAAback to top mRNA from alignment at L-elsbetiae_contig6148:145..10282+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6148.14718.1 ID=mRNA_L-elsbetiae_contig6148.14718.1|Name=mRNA_L-elsbetiae_contig6148.14718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10138bp|location=Sequence derived from alignment at L-elsbetiae_contig6148:145..10282+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6148:145..10282+ >mRNA_L-elsbetiae_contig6148.14718.1 ID=mRNA_L-elsbetiae_contig6148.14718.1|Name=mRNA_L-elsbetiae_contig6148.14718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4590bp|location=Sequence derived from alignment at L-elsbetiae_contig6148:145..10282+ (Laminarionema elsbetiae ELsaHSoW15)back to top |